Rorug04G0030800

Transaldolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0003703
Physical Location & Seq
Reverse (-)
4457595 .. 4459866
2272 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0030800.1

Sequence Viewer

Length: 813 bp
ATGGAAGTGGGGAAATCCCCAAATTGGCGGGCTGCATATTTGGTTAAAATAGGGTCTGCCTTTCTTGTTTTCATGGGATTGATAGTGTCTAGACACGCCATTAAGAAGGTTGCCTGTGCTTTCATTTTGTGTTGGGACAAAGAGGTATATATTGGGGAGTGGCTGCGACACTATCACCAATTTCAGTTCCGGATGATATTTATCTTTTCTTCTCAAGCCGCTCTTCCTGACAAACCTAAAAGTCGCAAAATAGCACTTGCTTTTGACAAGCATCATGAAGAAATTTCGCTCGGGAACTTGAAGAGATTTCATTTCATAGAACTTCAGATTGCAACAAATAACTTCAGCAACAAGTACCTACTAAGAAAGGGAGGCTTTCGACATGTTTACAAAGGAACTATCTGCGATGGCACTGTCGTAGCAATCAAGAGACTTAAAGATGGCAGTGCTCTTGGTGGAGAGATTCAATTCCAGACTGAAGTTGAAATGATCAGCCTAGCAGTTCATCGCAACCTTCTCAGGCTTTATGGGTTTTGCATCACTCCAACAGAAAGACTTCTAGTGTACCCATACATGTCCAATGGTAGTGTGGCTTCTCATGTCAAAGGGAAACCAGTGTTGGATTGGGGAACTAGGAAACGGATTGCCTTGGGAGCTGCAAGAGGATTGTTATACCTTCATGAGCAGTGTGACCCGAAAATTATCCACAAGGGTGTGAAGGTAGCAAATGTACTTCTTGATGACTACTGTGAAGCCGTGGTCGGAGATTTTGATTTGGCAAAGCTTTTGGATCACCAAGTGTTCTGTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00030 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
TAL_FSA

Protein Analysis

270

Amino Acids

30.64

Weight (kDa)

9.43

Isoelectric Point (pI)

30.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 121 - 266 7e-20 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 121 - 263 1.5e-19 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 221
AccIII TCCGGA 1 cut(s) 189
AciI CCGC 2 cut(s) 28, 219
AclWI GGATC 1 cut(s) 798
AcsI RAATTY 1 cut(s) 282
AcuI CTGAAG 3 cut(s) 308, 328, 498
AdeI CACNNNGTG 1 cut(s) 799
AfaI GTAC 3 cut(s) 356, 566, 732
AfiI CCNNNNNNNGG 1 cut(s) 24
AflIII ACRYGT 2 cut(s) 382, 573
AgsI TTSAA 3 cut(s) 301, 467, 485
AjuI GAANNNNNNNTTGG 2 cut(s) 602, 634
AleI CACNNNNGTG 1 cut(s) 711
AluBI AGCT 2 cut(s) 656, 784
AluI AGCT 2 cut(s) 656, 784
Alw21I GWGCWC 1 cut(s) 451
Alw26I GTCTC 1 cut(s) 424
AlwI GGATC 1 cut(s) 798
Ama87I CYCGRG 1 cut(s) 290
Aor13HI TCCGGA 1 cut(s) 189
ApeKI GCWGC 3 cut(s) 32, 163, 656
ApoI RAATTY 1 cut(s) 282
Asp700I GAANNNNTTC 1 cut(s) 555
AsuHPI GGTGA 2 cut(s) 167, 785
AvaI CYCGRG 1 cut(s) 290
BarI GAAGNNNNNNTAC 2 cut(s) 577, 609
Bbv12I GWGCWC 1 cut(s) 451
BbvI GCAGC 3 cut(s) 19, 150, 643
BccI CCATC 2 cut(s) 401, 434
BceAI ACGGC 1 cut(s) 740
BclI TGATCA 1 cut(s) 489
BcoDI GTCTC 1 cut(s) 424
BfaI CTAG 4 cut(s) 90, 497, 560, 633
BisI GCNGC 4 cut(s) 33, 164, 219, 657
BlsI GCNGC 4 cut(s) 34, 165, 220, 658
BmeT110I CYCGRG 1 cut(s) 290
BmsI GCATC 2 cut(s) 280, 546
BpuEI CTTGAG 1 cut(s) 198
BsaBI GATNNNNATC 1 cut(s) 200
BsaJI CCNNGG 2 cut(s) 648, 756
BsaWI WCCGGW 1 cut(s) 189
Bsc4I CCNNNNNNNGG 1 cut(s) 24
Bse1I ACTGG 1 cut(s) 614
Bse8I GATNNNNATC 1 cut(s) 200
BseAI TCCGGA 1 cut(s) 189
BseDI CCNNGG 2 cut(s) 648, 756
BseGI GGATG 1 cut(s) 198
BseJI GATNNNNATC 1 cut(s) 200
BseLI CCNNNNNNNGG 1 cut(s) 24
BseMII CTCAG 1 cut(s) 532
BseNI ACTGG 1 cut(s) 614
BseXI GCAGC 3 cut(s) 19, 150, 643
BsiHKAI GWGCWC 1 cut(s) 451
BsiHKCI CYCGRG 1 cut(s) 290
BsiSI CCGG 1 cut(s) 190
BslFI GGGAC 1 cut(s) 149
BslI CCNNNNNNNGG 1 cut(s) 24
BsmAI GTCTC 1 cut(s) 424
BsmFI GGGAC 1 cut(s) 149
BsoBI CYCGRG 1 cut(s) 290
Bsp1286I GDGCHC 1 cut(s) 451
Bsp13I TCCGGA 1 cut(s) 189
Bsp143I GATC 2 cut(s) 489, 790
BspACI CCGC 2 cut(s) 28, 219
BspCNI CTCAG 1 cut(s) 531
BspEI TCCGGA 1 cut(s) 189
BspHI TCATGA 2 cut(s) 274, 679
BspPI GGATC 1 cut(s) 798
BspQI GCTCTTC 1 cut(s) 228
BsrBI CCGCTC 1 cut(s) 221
BsrI ACTGG 1 cut(s) 614
BssECI CCNNGG 2 cut(s) 648, 756
BssMI GATC 2 cut(s) 489, 790
BssT1I CCWWGG 1 cut(s) 648
Bst4CI ACNGT 2 cut(s) 415, 749
Bst6I CTCTTC 2 cut(s) 228, 296
BstC8I GCNNGC 1 cut(s) 30
BstDEI CTNAG 2 cut(s) 362, 518
BstDSI CCRYGG 1 cut(s) 756
BstF5I GGATG 1 cut(s) 198
BstKTI GATC 2 cut(s) 492, 793
BstMAI GTCTC 1 cut(s) 424
BstMBI GATC 2 cut(s) 489, 790
BstMWI GCNNNNNNNGC 1 cut(s) 653
BstNSI RCATGY 2 cut(s) 386, 577
BstV1I GCAGC 3 cut(s) 19, 150, 643
BtgI CCRYGG 1 cut(s) 756
BtgZI GCGATG 2 cut(s) 420, 491
BtsCI GGATG 1 cut(s) 198
BtsI GCAGTG 2 cut(s) 451, 692
BtsIMutI CAGTG 4 cut(s) 411, 451, 621, 692
Cac8I GCNNGC 1 cut(s) 30
CciI TCATGA 2 cut(s) 274, 679
Csp6I GTAC 3 cut(s) 355, 565, 731
CviAII CATG 6 cut(s) 73, 275, 383, 574, 599, 680
CviQI GTAC 3 cut(s) 355, 565, 731
DdeI CTNAG 2 cut(s) 362, 518
DpnI GATC 2 cut(s) 491, 792
DpnII GATC 2 cut(s) 489, 790
DraIII CACNNNGTG 1 cut(s) 799
Eam1104I CTCTTC 2 cut(s) 228, 296
EarI CTCTTC 2 cut(s) 228, 296
Eco130I CCWWGG 1 cut(s) 648
Eco57I CTGAAG 3 cut(s) 308, 328, 498
Eco88I CYCGRG 1 cut(s) 290
EcoT14I CCWWGG 1 cut(s) 648
ErhI CCWWGG 1 cut(s) 648
FaeI CATG 6 cut(s) 76, 278, 386, 577, 602, 683
FalI AAGNNNNNCTT 4 cut(s) 207, 239, 359, 391
FaqI GGGAC 1 cut(s) 149
FatI CATG 6 cut(s) 72, 274, 382, 573, 598, 679
FauI CCCGC 1 cut(s) 21
FbaI TGATCA 1 cut(s) 489
Fnu4HI GCNGC 4 cut(s) 33, 164, 219, 657
FokI GGATG 1 cut(s) 205
Fsp4HI GCNGC 4 cut(s) 33, 164, 219, 657
FspBI CTAG 4 cut(s) 90, 497, 560, 633
GluI GCNGC 4 cut(s) 33, 164, 219, 657
HapII CCGG 1 cut(s) 190
Hin1II CATG 6 cut(s) 76, 278, 386, 577, 602, 683
HindIII AAGCTT 1 cut(s) 782
HinfI GANTC 1 cut(s) 463
HpaII CCGG 1 cut(s) 190
HphI GGTGA 2 cut(s) 167, 785
Hpy166II GTNNAC 2 cut(s) 388, 565
Hpy188I TCNGA 2 cut(s) 327, 764
Hpy188III TCNNGA 9 cut(s) 90, 190, 227, 275, 292, 427, 472, 680, 737
Hpy8I GTNNAC 2 cut(s) 388, 565
HpyAV CCTTC 4 cut(s) 100, 524, 686, 712
HpyCH4III ACNGT 2 cut(s) 415, 749
HpyCH4V TGCA 4 cut(s) 35, 332, 537, 659
HpyF10VI GCNNNNNNNGC 1 cut(s) 653
HpyF3I CTNAG 2 cut(s) 362, 518
Hsp92II CATG 6 cut(s) 76, 278, 386, 577, 602, 683
Kpn2I TCCGGA 1 cut(s) 189
Ksp22I TGATCA 1 cut(s) 489
Kzo9I GATC 2 cut(s) 489, 790
LguI GCTCTTC 1 cut(s) 228
LmnI GCTCC 1 cut(s) 653
LpnPI CCDG 6 cut(s) 127, 203, 240, 485, 505, 627
Lsp1109I GCAGC 3 cut(s) 19, 150, 643
LweI GCATC 2 cut(s) 280, 546
MaeI CTAG 4 cut(s) 90, 497, 560, 633
MaeIII GTNAC 1 cut(s) 689
MalI GATC 2 cut(s) 491, 792
MbiI CCGCTC 1 cut(s) 221
MboI GATC 2 cut(s) 489, 790
MboII GAAGA 4 cut(s) 201, 215, 290, 313
MhlI GDGCHC 1 cut(s) 451
MluCI AATT 5 cut(s) 22, 179, 282, 467, 699
MmeI TCCRAC 3 cut(s) 569, 600, 742
MnlI CCTC 3 cut(s) 136, 365, 656
MroI TCCGGA 1 cut(s) 189
MroXI GAANNNNTTC 1 cut(s) 555
MseI TTAA 4 cut(s) 45, 102, 435, 811
MslI CAYNNNNRTG 1 cut(s) 711
MspI CCGG 1 cut(s) 190
MwoI GCNNNNNNNGC 1 cut(s) 653
NdeII GATC 2 cut(s) 489, 790
NlaIII CATG 6 cut(s) 76, 278, 386, 577, 602, 683
NmuCI GTSAC 1 cut(s) 689
NspI RCATGY 2 cut(s) 386, 577
OliI CACNNNNGTG 1 cut(s) 711
PagI TCATGA 2 cut(s) 274, 679
PciI ACATGT 2 cut(s) 382, 573
PciSI GCTCTTC 1 cut(s) 228
PdmI GAANNNNTTC 1 cut(s) 555
PfeI GAWTC 1 cut(s) 463
PkrI GCNGC 4 cut(s) 34, 165, 220, 658
PscI ACATGT 2 cut(s) 382, 573
RsaI GTAC 3 cut(s) 356, 566, 732
RsaNI GTAC 3 cut(s) 355, 565, 731
RseI CAYNNNNRTG 1 cut(s) 711
SapI GCTCTTC 1 cut(s) 228
SaqAI TTAA 4 cut(s) 45, 102, 435, 811
SatI GCNGC 4 cut(s) 33, 164, 219, 657
Sau3AI GATC 2 cut(s) 489, 790
SduI GDGCHC 1 cut(s) 451
SetI ASST 9 cut(s) 111, 147, 238, 360, 516, 658, 678, 723, 786
SfaNI GCATC 2 cut(s) 280, 546
SmiMI CAYNNNNRTG 1 cut(s) 711
SmlI CTYRAG 1 cut(s) 213
SmoI CTYRAG 1 cut(s) 213
Sse9I AATT 5 cut(s) 22, 179, 282, 467, 699
SsiI CCGC 2 cut(s) 28, 219
SspMI CTAG 4 cut(s) 90, 497, 560, 633
StyI CCWWGG 1 cut(s) 648
TaaI ACNGT 2 cut(s) 415, 749
TaqI TCGA 1 cut(s) 379
TasI AATT 5 cut(s) 22, 179, 282, 467, 699
TatI WGTACW 1 cut(s) 730
TauI GCSGC 1 cut(s) 221
TfiI GAWTC 1 cut(s) 463
Tru1I TTAA 4 cut(s) 45, 102, 435, 811
Tru9I TTAA 4 cut(s) 45, 102, 435, 811
TscAI CASTG 4 cut(s) 418, 451, 621, 692
TseFI GTSAC 1 cut(s) 689
TseI GCWGC 3 cut(s) 32, 163, 656
Tsp45I GTSAC 1 cut(s) 689
TspDTI ATGAA 7 cut(s) 61, 112, 291, 299, 304, 494, 668
TspGWI ACGGA 1 cut(s) 655
TspRI CASTG 4 cut(s) 418, 451, 621, 692
XapI RAATTY 1 cut(s) 282
XbaI TCTAGA 1 cut(s) 89
XceI RCATGY 2 cut(s) 386, 577
XcmI CCANNNNNNNNNTGG 3 cut(s) 586, 621, 803
XmnI GAANNNNTTC 1 cut(s) 555
XspI CTAG 4 cut(s) 90, 497, 560, 633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.