Rorug03G0217900

Transaldolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0003703
Physical Location & Seq
Forward (+)
19916197 .. 19917367
1171 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0217900.1

Sequence Viewer

Length: 339 bp
ATGCAAGCAGCACTGGCGGCCATGGCAGCCCACTCTGTGATGCTCTCAGCTTACTCATCCCCCACTCTCTTCGCCCAAATTCAAACCCCTAACCCCCGCCCAACTCTCCACTCCGCCTTCCACGGCGTCTTTCTCAAGCTCCCCATCAAATCCCAATCCCAATCCATGTCTCTCACCGCCGCCCCCAAGCCCCTCACGGTCGTCGCTGCCACCAAGAAGGTCGTCGCCGTCCTTAAGGGCACTTCAACCGTCGAAGGTATCGTCACCTTGACCCAAGACGATGACGGCACTTCGTCTTGCCTTCCTCATCAGTTGCTTCCTGAATGTTTAATTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00030 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
TAL_FSA

Protein Analysis

112

Amino Acids

11.7

Weight (kDa)

8.71

Isoelectric Point (pI)

42.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 17, 97, 114, 177, 180
AcoI YGGCCR 1 cut(s) 18
AcsI RAATTY 1 cut(s) 78
AcyI GRCGYC 1 cut(s) 126
AdeI CACNNNGTG 1 cut(s) 37
AflII CTTAAG 1 cut(s) 233
AgsI TTSAA 2 cut(s) 83, 246
AluBI AGCT 2 cut(s) 50, 139
AluI AGCT 2 cut(s) 50, 139
Alw26I GTCTC 1 cut(s) 174
AoxI GGCC 1 cut(s) 18
ApeKI GCWGC 3 cut(s) 8, 26, 206
ApoI RAATTY 1 cut(s) 78
ArsI GACNNNNNNTTYG 2 cut(s) 246, 278
AsuHPI GGTGA 2 cut(s) 166, 256
BaeGI GKGCMC 1 cut(s) 242
BbvI GCAGC 3 cut(s) 20, 38, 193
BccI CCATC 1 cut(s) 152
BceAI ACGGC 3 cut(s) 139, 212, 301
BcoDI GTCTC 1 cut(s) 174
BfrI CTTAAG 1 cut(s) 233
BisI GCNGC 5 cut(s) 9, 18, 27, 180, 207
BlsI GCNGC 5 cut(s) 10, 19, 28, 181, 208
BmsI GCATC 1 cut(s) 30
BpuEI CTTGAG 1 cut(s) 119
BsaHI GRCGYC 1 cut(s) 126
BsaJI CCNNGG 2 cut(s) 21, 121
Bse1I ACTGG 1 cut(s) 18
BseDI CCNNGG 2 cut(s) 21, 121
BseGI GGATG 1 cut(s) 56
BseMII CTCAG 1 cut(s) 60
BseNI ACTGG 1 cut(s) 18
BseSI GKGCMC 1 cut(s) 242
BseXI GCAGC 3 cut(s) 20, 38, 193
Bsh1285I CGRYCG 1 cut(s) 201
BshFI GGCC 1 cut(s) 20
BsiEI CGRYCG 1 cut(s) 201
BsmAI GTCTC 1 cut(s) 174
BsnI GGCC 1 cut(s) 20
Bsp1286I GDGCHC 1 cut(s) 242
Bsp19I CCATGG 1 cut(s) 21
BspACI CCGC 5 cut(s) 17, 97, 114, 177, 180
BspANI GGCC 1 cut(s) 20
BspCNI CTCAG 1 cut(s) 59
BspTI CTTAAG 1 cut(s) 233
BsrI ACTGG 1 cut(s) 18
BssECI CCNNGG 2 cut(s) 21, 121
BssNI GRCGYC 1 cut(s) 126
BssT1I CCWWGG 1 cut(s) 21
Bst4CI ACNGT 2 cut(s) 199, 250
Bst6I CTCTTC 1 cut(s) 74
BstACI GRCGYC 1 cut(s) 126
BstAFI CTTAAG 1 cut(s) 233
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 1 cut(s) 46
BstDSI CCRYGG 2 cut(s) 21, 121
BstF5I GGATG 1 cut(s) 56
BstMAI GTCTC 1 cut(s) 174
BstMCI CGRYCG 1 cut(s) 201
BstMWI GCNNNNNNNGC 4 cut(s) 14, 17, 23, 26
BstSLI GKGCMC 1 cut(s) 242
BstV1I GCAGC 3 cut(s) 20, 38, 193
BsuRI GGCC 1 cut(s) 20
BtgI CCRYGG 2 cut(s) 21, 121
BtsCI GGATG 1 cut(s) 56
BtsIMutI CAGTG 1 cut(s) 11
Cac8I GCNNGC 1 cut(s) 6
CseI GACGC 1 cut(s) 115
CviAII CATG 2 cut(s) 22, 166
CviJI RGCY 5 cut(s) 20, 29, 50, 139, 190
CviKI_1 RGCY 5 cut(s) 20, 29, 50, 139, 190
DdeI CTNAG 1 cut(s) 46
DraIII CACNNNGTG 1 cut(s) 37
EaeI YGGCCR 1 cut(s) 18
Eam1104I CTCTTC 1 cut(s) 74
EarI CTCTTC 1 cut(s) 74
EciI GGCGGA 1 cut(s) 103
Eco130I CCWWGG 1 cut(s) 21
EcoT14I CCWWGG 1 cut(s) 21
ErhI CCWWGG 1 cut(s) 21
FaeI CATG 2 cut(s) 25, 169
FaiI YATR 3 cut(s) 23, 167, 337
FatI CATG 2 cut(s) 21, 165
FauI CCCGC 1 cut(s) 104
Fnu4HI GCNGC 5 cut(s) 9, 18, 27, 180, 207
FokI GGATG 1 cut(s) 43
Fsp4HI GCNGC 5 cut(s) 9, 18, 27, 180, 207
GluI GCNGC 5 cut(s) 9, 18, 27, 180, 207
HaeIII GGCC 1 cut(s) 20
HgaI GACGC 1 cut(s) 115
Hin1I GRCGYC 1 cut(s) 126
Hin1II CATG 2 cut(s) 25, 169
HphI GGTGA 2 cut(s) 166, 256
Hpy188III TCNNGA 1 cut(s) 320
Hpy99I CGWCG 3 cut(s) 206, 227, 254
HpyAV CCTTC 4 cut(s) 127, 211, 248, 311
HpyCH4III ACNGT 2 cut(s) 199, 250
HpyCH4V TGCA 2 cut(s) 4, 335
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 17, 23, 26
HpyF3I CTNAG 1 cut(s) 46
Hsp92I GRCGYC 1 cut(s) 126
Hsp92II CATG 2 cut(s) 25, 169
LmnI GCTCC 1 cut(s) 144
LpnPI CCDG 1 cut(s) 333
Lsp1109I GCAGC 3 cut(s) 20, 38, 193
LweI GCATC 1 cut(s) 30
MaeIII GTNAC 1 cut(s) 262
MboII GAAGA 1 cut(s) 61
MhlI GDGCHC 1 cut(s) 242
MluCI AATT 2 cut(s) 78, 330
MnlI CCTC 2 cut(s) 203, 315
MseI TTAA 2 cut(s) 234, 329
MspCI CTTAAG 1 cut(s) 233
MwoI GCNNNNNNNGC 4 cut(s) 14, 17, 23, 26
NcoI CCATGG 1 cut(s) 21
NlaIII CATG 2 cut(s) 25, 169
NmuCI GTSAC 1 cut(s) 262
PcsI WCGNNNNNNNCGW 1 cut(s) 258
PkrI GCNGC 5 cut(s) 10, 19, 28, 181, 208
SaqAI TTAA 2 cut(s) 234, 329
SatI GCNGC 5 cut(s) 9, 18, 27, 180, 207
SduI GDGCHC 1 cut(s) 242
SetI ASST 5 cut(s) 52, 141, 222, 259, 269
SfaNI GCATC 1 cut(s) 30
SmlI CTYRAG 2 cut(s) 134, 233
SmoI CTYRAG 2 cut(s) 134, 233
Sse9I AATT 2 cut(s) 78, 330
SsiI CCGC 5 cut(s) 17, 97, 114, 177, 180
StyI CCWWGG 1 cut(s) 21
TaaI ACNGT 2 cut(s) 199, 250
TaqI TCGA 1 cut(s) 252
TasI AATT 2 cut(s) 78, 330
TauI GCSGC 2 cut(s) 20, 182
Tru1I TTAA 2 cut(s) 234, 329
Tru9I TTAA 2 cut(s) 234, 329
TscAI CASTG 1 cut(s) 18
TseFI GTSAC 1 cut(s) 262
TseI GCWGC 3 cut(s) 8, 26, 206
Tsp45I GTSAC 1 cut(s) 262
TspRI CASTG 1 cut(s) 18
Vha464I CTTAAG 1 cut(s) 233
XapI RAATTY 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.