Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003703

Physical Location & Seq

Genomic Coordinates Forward (+)

34275685 .. 34278138

Gene Structure 2454 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013625

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGATTTTTCAGACATAGCTAAGAAGCTTGACCTCTCTAACTCCAAGAAAGTCGTCGGCCTCTGTGACATCCATTTCTACCCTTCCATAGTCAACGTTCATGGCTCTGTGTATAAGCTTGCGTTTGGACCGAAAGGATTTGCTGTGGTATCAGATCCTATTGTTGCAAGGCATATTCTTCGAGAAAATGCATTTGGTTATAATAAGGGCATTGTGAAGGAGGGGAGACATTTAAGTTATGCTTCTTGGTTGCTTCTCAGTGAGGCAGCGGTGGATTCTGAGAATGCTGTAGCTACCGTAAATGTAAGTACTTGGAGCACCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

109

Amino Acids

11.81

Weight (kDa)

8.74

Isoelectric Point (pI)

25.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003703)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0097261 RchiOBHm_Chr4g0388121 RchiOBHm_Chr6g0254981 RchiOBHm_Chr6g0270571
rosa_laevigata	RLG00000013625 RLG00000016400 RLG00000027818 RLG00000028940 RLG00000033711 RLG00000035539 RLG00000035931
rosa_multiflora	Rmu_sc0000322.1_g000027
rosa_roxburghii	Rroxscaffold_1G00026630 Rroxscaffold_5G00347830
rosa_rugosa	Rorug02G0295700 Rorug03G0217900 Rorug04G0030800 Rorug04G0257000 Rorug05G0516900 Rorug06G0100200 Rorug06G0468100
rosa_samantha	Rh1AG155900 Rh1AG219700 Rh1DG187200 Rh2BG424900 Rh4AG076000 Rh4BG015100 Rh4DG099500 Rh7CG342400 Rh7DG317900 Rh7DG373200
rosa_wichuraiana	Rw3G022170 Rw7G027100 Rw7G027110 Rw7G031460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	201
AciI	CCGC	1 cut(s)	269
AclI	AACGTT	1 cut(s)	96
AclWI	GGATC	1 cut(s)	149
AfaI	GTAC	1 cut(s)	310
AjuI	GAANNNNNNNTTGG	2 cut(s)	177, 209
AluBI	AGCT	4 cut(s)	20, 28, 118, 293
AluI	AGCT	4 cut(s)	20, 28, 118, 293
Alw21I	GWGCWC	1 cut(s)	320
Alw26I	GTCTC	1 cut(s)	220
AlwI	GGATC	1 cut(s)	149
AoxI	GGCC	1 cut(s)	58
ApeKI	GCWGC	1 cut(s)	266
AspS9I	GGNCC	1 cut(s)	128
AvaII	GGWCC	1 cut(s)	128
Bbv12I	GWGCWC	1 cut(s)	320
BbvI	GCAGC	1 cut(s)	278
BcgI	CGANNNNNNTGC	2 cut(s)	161, 195
BcoDI	GTCTC	1 cut(s)	220
BfmI	CTRYAG	1 cut(s)	288
BisI	GCNGC	1 cut(s)	267
BlsI	GCNGC	1 cut(s)	268
BmcAI	AGTACT	1 cut(s)	310
Bme18I	GGWCC	1 cut(s)	128
BmgT120I	GGNCC	1 cut(s)	128
BseGI	GGATG	1 cut(s)	69
BseMII	CTCAG	2 cut(s)	270, 271
BseXI	GCAGC	1 cut(s)	278
BshFI	GGCC	1 cut(s)	60
BsiHKAI	GWGCWC	1 cut(s)	320
BsmAI	GTCTC	1 cut(s)	220
BsmI	GAATGC	1 cut(s)	289
BsnI	GGCC	1 cut(s)	60
Bsp1286I	GDGCHC	1 cut(s)	320
Bsp143I	GATC	1 cut(s)	154
BspACI	CCGC	1 cut(s)	269
BspANI	GGCC	1 cut(s)	60
BspCNI	CTCAG	2 cut(s)	270, 271
BspPI	GGATC	1 cut(s)	149
BssMI	GATC	1 cut(s)	154
Bst4CI	ACNGT	1 cut(s)	298
BstC8I	GCNNGC	1 cut(s)	120
BstDEI	CTNAG	3 cut(s)	21, 257, 279
BstF5I	GGATG	1 cut(s)	69
BstKTI	GATC	1 cut(s)	157
BstMAI	GTCTC	1 cut(s)	220
BstMBI	GATC	1 cut(s)	154
BstSFI	CTRYAG	1 cut(s)	288
BstV1I	GCAGC	1 cut(s)	278
BstX2I	RGATCY	1 cut(s)	154
BstYI	RGATCY	1 cut(s)	154
BsuRI	GGCC	1 cut(s)	60
BtsCI	GGATG	1 cut(s)	69
BtsIMutI	CAGTG	1 cut(s)	265
Cac8I	GCNNGC	1 cut(s)	120
Cfr13I	GGNCC	1 cut(s)	128
Csp6I	GTAC	1 cut(s)	309
CviAII	CATG	1 cut(s)	101
CviJI	RGCY	6 cut(s)	20, 28, 60, 105, 118, 293
CviKI_1	RGCY	6 cut(s)	20, 28, 60, 105, 118, 293
CviQI	GTAC	1 cut(s)	309
DdeI	CTNAG	3 cut(s)	21, 257, 279
DpnI	GATC	1 cut(s)	156
DpnII	GATC	1 cut(s)	154
Eco47I	GGWCC	1 cut(s)	128
EcoT22I	ATGCAT	1 cut(s)	193
FaeI	CATG	1 cut(s)	104
FaiI	YATR	7 cut(s)	17, 89, 102, 114, 174, 201, 240
FalI	AAGNNNNNCTT	2 cut(s)	226, 258
FatI	CATG	1 cut(s)	100
Fnu4HI	GCNGC	1 cut(s)	267
FokI	GGATG	1 cut(s)	56
Fsp4HI	GCNGC	1 cut(s)	267
GluI	GCNGC	1 cut(s)	267
HaeIII	GGCC	1 cut(s)	60
Hin1II	CATG	1 cut(s)	104
HincII	GTYRAC	1 cut(s)	94
HindII	GTYRAC	1 cut(s)	94
HindIII	AAGCTT	2 cut(s)	26, 116
HinfI	GANTC	1 cut(s)	275
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188I	TCNGA	3 cut(s)	13, 154, 280
Hpy188III	TCNNGA	1 cut(s)	182
Hpy8I	GTNNAC	1 cut(s)	94
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	2 cut(s)	93, 211
HpyCH4III	ACNGT	1 cut(s)	298
HpyCH4IV	ACGT	1 cut(s)	96
HpyCH4V	TGCA	2 cut(s)	167, 191
HpyF3I	CTNAG	3 cut(s)	21, 257, 279
HpySE526I	ACGT	1 cut(s)	96
Hsp92II	CATG	1 cut(s)	104
Kzo9I	GATC	1 cut(s)	154
LmnI	GCTCC	1 cut(s)	315
Lsp1109I	GCAGC	1 cut(s)	278
MaeII	ACGT	1 cut(s)	96
MaeIII	GTNAC	1 cut(s)	65
MalI	GATC	1 cut(s)	156
MboI	GATC	1 cut(s)	154
MboII	GAAGA	1 cut(s)	170
MflI	RGATCY	1 cut(s)	154
MhlI	GDGCHC	1 cut(s)	320
MnlI	CCTC	4 cut(s)	44, 71, 214, 256
Mph1103I	ATGCAT	1 cut(s)	193
MseI	TTAA	1 cut(s)	233
MspA1I	CMGCKG	1 cut(s)	269
Mva1269I	GAATGC	1 cut(s)	289
NdeII	GATC	1 cut(s)	154
NlaIII	CATG	1 cut(s)	104
NmuCI	GTSAC	1 cut(s)	65
NsiI	ATGCAT	1 cut(s)	193
PctI	GAATGC	1 cut(s)	289
PfeI	GAWTC	1 cut(s)	275
PkrI	GCNGC	1 cut(s)	268
PsiI	TTATAA	1 cut(s)	201
Psp1406I	AACGTT	1 cut(s)	96
PspPI	GGNCC	1 cut(s)	128
PsuI	RGATCY	1 cut(s)	154
RsaI	GTAC	1 cut(s)	310
RsaNI	GTAC	1 cut(s)	309
SaqAI	TTAA	1 cut(s)	233
SatI	GCNGC	1 cut(s)	267
Sau3AI	GATC	1 cut(s)	154
Sau96I	GGNCC	1 cut(s)	128
ScaI	AGTACT	1 cut(s)	310
SduI	GDGCHC	1 cut(s)	320
SetI	ASST	6 cut(s)	22, 30, 36, 99, 120, 295
SfcI	CTRYAG	1 cut(s)	288
SgeI	CNNG	7 cut(s)	41, 58, 113, 131, 180, 194, 258
SinI	GGWCC	1 cut(s)	128
SsiI	CCGC	1 cut(s)	269
TaaI	ACNGT	1 cut(s)	298
TaiI	ACGT	1 cut(s)	99
TaqI	TCGA	1 cut(s)	181
TaqII	GACCGA	1 cut(s)	145
TatI	WGTACW	1 cut(s)	308
TfiI	GAWTC	1 cut(s)	275
Tru1I	TTAA	1 cut(s)	233
Tru9I	TTAA	1 cut(s)	233
TscAI	CASTG	1 cut(s)	265
TseFI	GTSAC	1 cut(s)	65
TseI	GCWGC	1 cut(s)	266
Tsp45I	GTSAC	1 cut(s)	65
TspDTI	ATGAA	1 cut(s)	89
TspRI	CASTG	1 cut(s)	265
VpaK11BI	GGWCC	1 cut(s)	128
ZrmI	AGTACT	1 cut(s)	310
Zsp2I	ATGCAT	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.