Rroxscaffold_5G00347830

Transaldolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0003703
Physical Location & Seq
Forward (+)
19472598 .. 19474740
2143 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00347830.1

Sequence Viewer

Length: 357 bp
ATGTTGCTTATAAGATCACTGCTAAGGCCTCGGATGTTGCGCATACTATGTATGCTGTTTTTAATTATGTTTCCTCCAACTGCTGCTATTGTGAGCTCCGCCCTACTCGTGGGTATATGCAGTCTCCCTGATACCATATTTAGAAATGCTGTGGATATGGCGCTCGTAGATTCGGAGTGTAACAAGCATGAGAATTCTGAATTGAGATTGCCATGTTTCTGTAACAAGGCTTTAGTCAATGTTGGTGTTGATTTGGCAAAACTAGTTCCTGGCCGAGTGTCCACTGAGGTAGATGCACGTCTTGCTTATGACACGCATGGAATTATAAGGAAGTTACTTTCACAAATGATAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00030 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
TAL_FSA

Protein Analysis

118

Amino Acids

13.11

Weight (kDa)

8.73

Isoelectric Point (pI)

38.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAL_FSA PF00923 45 - 111 1.3e-06 Transaldolase/Fructose-6-phosphate aldolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 11, 326
Acc16I TGCGCA 1 cut(s) 41
AciI CCGC 1 cut(s) 99
AcoI YGGCCR 1 cut(s) 271
AcsI RAATTY 1 cut(s) 193
AfiI CCNNNNNNNGG 1 cut(s) 109
AhlI ACTAGT 1 cut(s) 262
AjiI CACGTC 1 cut(s) 299
AjnI CCWGG 1 cut(s) 268
AluBI AGCT 1 cut(s) 96
AluI AGCT 1 cut(s) 96
Alw21I GWGCWC 1 cut(s) 98
Alw26I GTCTC 1 cut(s) 128
AoxI GGCC 2 cut(s) 26, 271
ApeKI GCWGC 1 cut(s) 83
ApoI RAATTY 1 cut(s) 193
AspLEI GCGC 2 cut(s) 42, 163
BanII GRGCYC 1 cut(s) 98
BauI CACGAG 1 cut(s) 107
Bbv12I GWGCWC 1 cut(s) 98
BbvI GCAGC 1 cut(s) 70
BciT130I CCWGG 1 cut(s) 270
BcoDI GTCTC 1 cut(s) 128
BcuI ACTAGT 1 cut(s) 262
BfaI CTAG 1 cut(s) 263
BfoI RGCGCY 1 cut(s) 164
BisI GCNGC 1 cut(s) 84
BlsI GCNGC 1 cut(s) 85
Bme1390I CCNGG 1 cut(s) 270
BmgBI CACGTC 1 cut(s) 299
BmrFI CCNGG 1 cut(s) 270
BmsI GCATC 1 cut(s) 283
Bpu10I CCTNAGC 1 cut(s) 23
BsaJI CCNNGG 1 cut(s) 29
Bsc4I CCNNNNNNNGG 1 cut(s) 109
BseBI CCWGG 1 cut(s) 270
BseDI CCNNGG 1 cut(s) 29
BseGI GGATG 1 cut(s) 39
BseLI CCNNNNNNNGG 1 cut(s) 109
BseMII CTCAG 1 cut(s) 276
BseXI GCAGC 1 cut(s) 70
BshFI GGCC 2 cut(s) 28, 273
BsiHKAI GWGCWC 1 cut(s) 98
BslI CCNNNNNNNGG 1 cut(s) 109
BsmAI GTCTC 1 cut(s) 128
BsnI GGCC 2 cut(s) 28, 273
Bsp1286I GDGCHC 1 cut(s) 98
Bsp143I GATC 1 cut(s) 14
BspACI CCGC 1 cut(s) 99
BspANI GGCC 2 cut(s) 28, 273
BspCNI CTCAG 1 cut(s) 277
BssECI CCNNGG 1 cut(s) 29
BssMI GATC 1 cut(s) 14
BssSI CACGAG 1 cut(s) 107
Bst2BI CACGAG 1 cut(s) 107
Bst2UI CCWGG 1 cut(s) 270
BstAPI GCANNNNNTGC 1 cut(s) 302
BstDEI CTNAG 2 cut(s) 23, 285
BstF5I GGATG 1 cut(s) 39
BstH2I RGCGCY 1 cut(s) 164
BstHHI GCGC 2 cut(s) 42, 163
BstKTI GATC 1 cut(s) 17
BstMAI GTCTC 1 cut(s) 128
BstMBI GATC 1 cut(s) 14
BstMWI GCNNNNNNNGC 1 cut(s) 302
BstNI CCWGG 1 cut(s) 270
BstSCI CCNGG 1 cut(s) 268
BstV1I GCAGC 1 cut(s) 70
BsuRI GGCC 2 cut(s) 28, 273
BtrI CACGTC 1 cut(s) 299
BtsCI GGATG 1 cut(s) 39
BtsI GCAGTG 1 cut(s) 17
BtsIMutI CAGTG 2 cut(s) 17, 282
CfoI GCGC 2 cut(s) 42, 163
CviAII CATG 3 cut(s) 188, 213, 317
CviJI RGCY 4 cut(s) 28, 96, 230, 273
CviKI_1 RGCY 4 cut(s) 28, 96, 230, 273
DdeI CTNAG 2 cut(s) 23, 285
DpnI GATC 1 cut(s) 16
DpnII GATC 1 cut(s) 14
EaeI YGGCCR 1 cut(s) 271
EciI GGCGGA 1 cut(s) 88
Ecl136II GAGCTC 1 cut(s) 96
Eco147I AGGCCT 1 cut(s) 28
Eco24I GRGCYC 1 cut(s) 98
Eco53kI GAGCTC 1 cut(s) 96
EcoICRI GAGCTC 1 cut(s) 96
EcoRI GAATTC 1 cut(s) 193
EcoRII CCWGG 1 cut(s) 268
EcoT38I GRGCYC 1 cut(s) 98
FaeI CATG 3 cut(s) 191, 216, 320
FatI CATG 3 cut(s) 187, 212, 316
Fnu4HI GCNGC 1 cut(s) 84
FokI GGATG 1 cut(s) 46
FriOI GRGCYC 1 cut(s) 98
Fsp4HI GCNGC 1 cut(s) 84
FspBI CTAG 1 cut(s) 263
FspI TGCGCA 1 cut(s) 41
GlaI GCGC 2 cut(s) 41, 162
GluI GCNGC 1 cut(s) 84
HaeII RGCGCY 1 cut(s) 164
HaeIII GGCC 2 cut(s) 28, 273
HhaI GCGC 2 cut(s) 42, 163
Hin1II CATG 3 cut(s) 191, 216, 320
Hin6I GCGC 2 cut(s) 40, 161
HinP1I GCGC 2 cut(s) 40, 161
HinfI GANTC 1 cut(s) 170
Hpy166II GTNNAC 1 cut(s) 282
Hpy188I TCNGA 3 cut(s) 33, 175, 199
Hpy8I GTNNAC 1 cut(s) 282
HpyCH4IV ACGT 1 cut(s) 298
HpyCH4V TGCA 2 cut(s) 120, 296
HpyF10VI GCNNNNNNNGC 1 cut(s) 302
HpyF3I CTNAG 2 cut(s) 23, 285
HpySE526I ACGT 1 cut(s) 298
Hsp92II CATG 3 cut(s) 191, 216, 320
HspAI GCGC 2 cut(s) 40, 161
Kzo9I GATC 1 cut(s) 14
LmnI GCTCC 1 cut(s) 101
LpnPI CCDG 3 cut(s) 141, 255, 282
Lsp1109I GCAGC 1 cut(s) 70
LweI GCATC 1 cut(s) 283
MaeI CTAG 1 cut(s) 263
MaeII ACGT 1 cut(s) 298
MaeIII GTNAC 3 cut(s) 179, 221, 333
MalI GATC 1 cut(s) 16
MboI GATC 1 cut(s) 14
MhlI GDGCHC 1 cut(s) 98
MluCI AATT 5 cut(s) 63, 193, 200, 321, 351
MmeI TCCRAC 1 cut(s) 101
MnlI CCTC 3 cut(s) 39, 84, 280
MseI TTAA 1 cut(s) 62
MspR9I CCNGG 1 cut(s) 270
MvaI CCWGG 1 cut(s) 270
MwoI GCNNNNNNNGC 1 cut(s) 302
NdeII GATC 1 cut(s) 14
NlaIII CATG 3 cut(s) 191, 216, 320
NmeAIII GCCGAG 1 cut(s) 299
NsbI TGCGCA 1 cut(s) 41
PceI AGGCCT 1 cut(s) 28
PfeI GAWTC 1 cut(s) 170
PkrI GCNGC 1 cut(s) 85
PsiI TTATAA 2 cut(s) 11, 326
Psp124BI GAGCTC 1 cut(s) 98
Psp6I CCWGG 1 cut(s) 268
PspGI CCWGG 1 cut(s) 268
SacI GAGCTC 1 cut(s) 98
SaqAI TTAA 1 cut(s) 62
SatI GCNGC 1 cut(s) 84
Sau3AI GATC 1 cut(s) 14
ScrFI CCNGG 1 cut(s) 270
SduI GDGCHC 1 cut(s) 98
SetI ASST 3 cut(s) 98, 291, 301
SfaNI GCATC 1 cut(s) 283
SpeI ACTAGT 1 cut(s) 262
Sse9I AATT 5 cut(s) 63, 193, 200, 321, 351
SseBI AGGCCT 1 cut(s) 28
SsiI CCGC 1 cut(s) 99
SspMI CTAG 1 cut(s) 263
SstI GAGCTC 1 cut(s) 98
StuI AGGCCT 1 cut(s) 28
StyD4I CCNGG 1 cut(s) 268
TaiI ACGT 1 cut(s) 301
TasI AATT 5 cut(s) 63, 193, 200, 321, 351
TfiI GAWTC 1 cut(s) 170
Tru1I TTAA 1 cut(s) 62
Tru9I TTAA 1 cut(s) 62
TscAI CASTG 2 cut(s) 24, 289
TseI GCWGC 1 cut(s) 83
TspRI CASTG 2 cut(s) 24, 289
XapI RAATTY 1 cut(s) 193
XspI CTAG 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.