Rh2BG424900

Transaldolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0003703
Physical Location & Seq
Reverse (-)
59847536 .. 59881697
34162 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG424900.1

Sequence Viewer

Length: 1434 bp
ATGCCGCATCTGACCGCCTCCTATTCTGGAGACATCTGCAATTCTGGCAACGACGCCAAAAATCGTGAAACTCCAAATCCCCCACCTAACATCACTAATGATACCAGCACTAGCAAGGTTCGGGTTCGGGTTCATGTCTGGGAGAAGGTTCTGGAGAGGGACTTGGTGTTATTTAAAGGCACCAAGGCGAAACAGATTGAGGATGTTGCTTATAGGATCACTGCTAAGGCCTCGGATGTTGTGCATACTATGTATGCTGTTCTTAATTATATATCAGTTATGGTGGTGAAGATAGTGGTCATCAGCCGTATTTTATCTGGGATTTCAGCTGTGAGGAGGTTCATACCAAAAGCTCGCCCAAAAGCTGAAGTTAAACCCGACCTAGAGGAGGAAGAGCAAGCTAGTCATGCTGAAAAGGAGAGGGAGTTGCTCAGACATTTCCATGAACAATCTTTGAGGGCAACGCTGAAAAACGAAAAAGAAAGGTTTATACCTGTTTCCTCCAACTGCTGTACTGTGAGCTCCGCCCTACTCTTGGGTATATGCAGTCTCCCTGATACCATATTTAGAAATGCTGTGGATATGGCGCTGGCAGATTCGGAGTGTAACAAGTATGAGAATTCTGAATTGAGATTGTCATGTTTCTGTAACAAGGCTTTAGTCAATGTTGGTACTGATTTGGCAAAACTAGTTCCTGGCCGAGTGTCCACTGAGGTAGATGCACATCTTGCTTATGACACGCATGGAATTATAAGGAAGCATGGCTCTGTGCATATTCTTCGAGAAAATGCATTTGGTTATAATAAGGTTATTGTGAAGGAGGGGAGACATTTAAGTTCTGCTTCTTGGTTGCTTCTCAGTGAGGCAGCGGTGGATTCTAAGAATGCTGTAGCTGCCGTAAATTCTCAGTTGGAGAAGATGAGTCACCTATATGAGGATGAAGAGGATTACGAAGAAAATGGATATGACGATAGTGAGACACAAGATGTTGGTGGCGATTTTAATATTCAACAAGACGACAACAGCGAGACACAAGATGTTGGTGGCATGTTTCATCAGCAAGACGACGTCAATGTTTCATCAGAGGCTCTTAAGGGAACAAAGAAGCACCGTGGTCCAAACCAAAAAAATTGGGCAATGGACAGTCGGAAAAAGCTCTTGTGGAATCGTTTTGGACTTCCCAAGGGTCCGAAATTGAAGGAAATTTCTCATGGTAAAGAGCCAGATAGGTGGGAGCTATTTAAATTAACACATCAAAGGAAAGGGTCCCAAGAACCAATCGATGCGGCATCTGCAAAGGCAATTTTTGCTCGTGACATGTCTCAGTTTGCTCGTGACACGTCTCAAAGGCCATCGACTGTTGCTTTTTCACCAGATGATGATGTCTACCGTCCTACAATGCCATCTGATTGCCCCAATATGCAAATTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00030 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
TAL_FSA

Protein Analysis

477

Amino Acids

53.49

Weight (kDa)

6.18

Isoelectric Point (pI)

42.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAL_FSA PF00923 187 - 253 8.2e-06 Transaldolase/Fructose-6-phosphate aldolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 752, 801
AatII GACGTC 1 cut(s) 1071
AccB1I GGYRCC 1 cut(s) 179
AccI GTMKAC 1 cut(s) 1386
AciI CCGC 5 cut(s) 5, 15, 525, 869, 1286
AclWI GGATC 1 cut(s) 224
AcoI YGGCCR 1 cut(s) 697
AcsI RAATTY 3 cut(s) 619, 901, 1203
AcuI CTGAAG 1 cut(s) 387
AcyI GRCGYC 2 cut(s) 54, 1068
AfaI GTAC 2 cut(s) 514, 673
AfiI CCNNNNNNNGG 3 cut(s) 388, 535, 934
AflII CTTAAG 1 cut(s) 1091
AflIII ACRYGT 2 cut(s) 1317, 1338
AgsI TTSAA 2 cut(s) 1010, 1198
AhlI ACTAGT 1 cut(s) 688
AjiI CACGTC 1 cut(s) 1341
AjnI CCWGG 1 cut(s) 694
AjuI GAANNNNNNNTTGG 2 cut(s) 777, 809
AluBI AGCT 8 cut(s) 329, 353, 365, 401, 522, 893, 1156, 1237
AluI AGCT 8 cut(s) 329, 353, 365, 401, 522, 893, 1156, 1237
Alw21I GWGCWC 1 cut(s) 524
Alw26I GTCTC 7 cut(s) 24, 554, 820, 971, 1022, 1326, 1347
AlwI GGATC 1 cut(s) 224
AoxI GGCC 3 cut(s) 228, 697, 1349
ApeKI GCWGC 2 cut(s) 866, 893
ApoI RAATTY 3 cut(s) 619, 901, 1203
AspLEI GCGC 1 cut(s) 589
AspS9I GGNCC 3 cut(s) 1115, 1187, 1266
AsuHPI GGTGA 3 cut(s) 298, 917, 1362
AvaII GGWCC 3 cut(s) 1115, 1187, 1266
BanI GGYRCC 1 cut(s) 179
BanII GRGCYC 1 cut(s) 524
BauI CACGAG 2 cut(s) 1311, 1332
Bbv12I GWGCWC 1 cut(s) 524
BbvI GCAGC 2 cut(s) 878, 880
BccI CCATC 2 cut(s) 1360, 1411
BceAI ACGGC 2 cut(s) 291, 881
BcgI CGANNNNNNTGC 2 cut(s) 761, 795
BciT130I CCWGG 1 cut(s) 696
BcoDI GTCTC 7 cut(s) 24, 554, 820, 971, 1022, 1326, 1347
BcuI ACTAGT 1 cut(s) 688
BfaI CTAG 4 cut(s) 111, 383, 402, 689
BfmI CTRYAG 1 cut(s) 888
BfoI RGCGCY 1 cut(s) 590
BfrI CTTAAG 1 cut(s) 1091
BisI GCNGC 4 cut(s) 5, 867, 894, 1287
BlsI GCNGC 4 cut(s) 6, 868, 895, 1288
Bme1390I CCNGG 1 cut(s) 696
Bme18I GGWCC 3 cut(s) 1115, 1187, 1266
BmgBI CACGTC 1 cut(s) 1341
BmgT120I GGNCC 3 cut(s) 1115, 1187, 1266
BmiI GGNNCC 4 cut(s) 181, 1188, 1267, 1268
BmrFI CCNGG 1 cut(s) 696
BmsI GCATC 4 cut(s) 16, 709, 1273, 1298
BpmI CTGGAG 2 cut(s) 48, 173
Bpu10I CCTNAGC 1 cut(s) 225
Bsa29I ATCGAT 1 cut(s) 1281
BsaBI GATNNNNATC 1 cut(s) 723
BsaHI GRCGYC 2 cut(s) 54, 1068
BsaJI CCNNGG 4 cut(s) 183, 231, 1111, 1182
BsaXI ACNNNNNCTCC 2 cut(s) 410, 440
Bsc4I CCNNNNNNNGG 3 cut(s) 388, 535, 934
Bse3DI GCAATG 1 cut(s) 1143
Bse8I GATNNNNATC 1 cut(s) 723
BseBI CCWGG 1 cut(s) 696
BseCI ATCGAT 1 cut(s) 1281
BseDI CCNNGG 4 cut(s) 183, 231, 1111, 1182
BseGI GGATG 3 cut(s) 208, 241, 943
BseJI GATNNNNATC 1 cut(s) 723
BseLI CCNNNNNNNGG 3 cut(s) 388, 535, 934
BseMI GCAATG 1 cut(s) 1143
BseMII CTCAG 5 cut(s) 445, 702, 871, 920, 1337
BseRI GAGGAG 2 cut(s) 349, 401
BseXI GCAGC 2 cut(s) 878, 880
BshFI GGCC 3 cut(s) 230, 699, 1351
BshNI GGYRCC 1 cut(s) 179
BshVI ATCGAT 1 cut(s) 1281
BsiHKAI GWGCWC 1 cut(s) 524
BslFI GGGAC 2 cut(s) 173, 1252
BslI CCNNNNNNNGG 3 cut(s) 388, 535, 934
BsmAI GTCTC 7 cut(s) 24, 554, 820, 971, 1022, 1326, 1347
BsmBI CGTCTC 1 cut(s) 1347
BsmFI GGGAC 2 cut(s) 173, 1252
BsmI GAATGC 1 cut(s) 889
BsnI GGCC 3 cut(s) 230, 699, 1351
Bsp1286I GDGCHC 1 cut(s) 524
Bsp143I GATC 1 cut(s) 216
BspACI CCGC 5 cut(s) 5, 15, 525, 869, 1286
BspANI GGCC 3 cut(s) 230, 699, 1351
BspCNI CTCAG 5 cut(s) 444, 703, 870, 919, 1336
BspDI ATCGAT 1 cut(s) 1281
BspLI GGNNCC 4 cut(s) 181, 1188, 1267, 1268
BspPI GGATC 1 cut(s) 224
BspQI GCTCTTC 1 cut(s) 387
BspT107I GGYRCC 1 cut(s) 179
BspTI CTTAAG 1 cut(s) 1091
BsrDI GCAATG 1 cut(s) 1143
BssECI CCNNGG 4 cut(s) 183, 231, 1111, 1182
BssMI GATC 1 cut(s) 216
BssNI GRCGYC 2 cut(s) 54, 1068
BssSI CACGAG 2 cut(s) 1311, 1332
BssT1I CCWWGG 2 cut(s) 183, 1182
Bst2BI CACGAG 2 cut(s) 1311, 1332
Bst2UI CCWGG 1 cut(s) 696
Bst4CI ACNGT 5 cut(s) 517, 1112, 1145, 1360, 1391
Bst6I CTCTTC 2 cut(s) 387, 936
BstACI GRCGYC 2 cut(s) 54, 1068
BstAFI CTTAAG 1 cut(s) 1091
BstAPI GCANNNNNTGC 2 cut(s) 728, 1307
BstC8I GCNNGC 3 cut(s) 355, 399, 591
BstDEI CTNAG 7 cut(s) 225, 431, 711, 857, 879, 906, 1323
BstDSI CCRYGG 1 cut(s) 1111
BstENI CCTNNNNNAGG 2 cut(s) 386, 932
BstF5I GGATG 3 cut(s) 208, 241, 943
BstH2I RGCGCY 1 cut(s) 590
BstHHI GCGC 1 cut(s) 589
BstKTI GATC 1 cut(s) 219
BstMAI GTCTC 7 cut(s) 24, 554, 820, 971, 1022, 1326, 1347
BstMBI GATC 1 cut(s) 216
BstMWI GCNNNNNNNGC 6 cut(s) 45, 407, 728, 893, 1292, 1307
BstNI CCWGG 1 cut(s) 696
BstNSI RCATGY 2 cut(s) 1051, 1321
BstSCI CCNGG 1 cut(s) 694
BstSFI CTRYAG 1 cut(s) 888
BstV1I GCAGC 2 cut(s) 878, 880
BstXI CCANNNNNNTGG 1 cut(s) 1230
Bsu15I ATCGAT 1 cut(s) 1281
BsuRI GGCC 3 cut(s) 230, 699, 1351
BsuTUI ATCGAT 1 cut(s) 1281
BtgI CCRYGG 1 cut(s) 1111
BtrI CACGTC 1 cut(s) 1341
BtsCI GGATG 3 cut(s) 208, 241, 943
BtsI GCAGTG 1 cut(s) 219
BtsIMutI CAGTG 3 cut(s) 219, 708, 865
Cac8I GCNNGC 3 cut(s) 355, 399, 591
CfoI GCGC 1 cut(s) 589
Cfr13I GGNCC 3 cut(s) 1115, 1187, 1266
ClaI ATCGAT 1 cut(s) 1281
CseI GACGC 1 cut(s) 62
Csp6I GTAC 2 cut(s) 513, 672
CviAII CATG 9 cut(s) 134, 407, 443, 639, 743, 761, 1048, 1211, 1318
CviQI GTAC 2 cut(s) 513, 672
DdeI CTNAG 7 cut(s) 225, 431, 711, 857, 879, 906, 1323
DpnI GATC 1 cut(s) 218
DpnII GATC 1 cut(s) 216
DraI TTTAAA 2 cut(s) 175, 1243
EaeI YGGCCR 1 cut(s) 697
Eam1104I CTCTTC 2 cut(s) 387, 936
EarI CTCTTC 2 cut(s) 387, 936
EciI GGCGGA 1 cut(s) 514
Ecl136II GAGCTC 1 cut(s) 522
Eco130I CCWWGG 2 cut(s) 183, 1182
Eco147I AGGCCT 1 cut(s) 230
Eco24I GRGCYC 1 cut(s) 524
Eco47I GGWCC 3 cut(s) 1115, 1187, 1266
Eco53kI GAGCTC 1 cut(s) 522
Eco57I CTGAAG 1 cut(s) 387
EcoICRI GAGCTC 1 cut(s) 522
EcoNI CCTNNNNNAGG 2 cut(s) 386, 932
EcoO109I RGGNCCY 1 cut(s) 1266
EcoRI GAATTC 1 cut(s) 619
EcoRII CCWGG 1 cut(s) 694
EcoT14I CCWWGG 2 cut(s) 183, 1182
EcoT22I ATGCAT 1 cut(s) 793
EcoT38I GRGCYC 1 cut(s) 524
ErhI CCWWGG 2 cut(s) 183, 1182
Esp3I CGTCTC 1 cut(s) 1347
FaeI CATG 9 cut(s) 137, 410, 446, 642, 746, 764, 1051, 1214, 1321
FalI AAGNNNNNCTT 2 cut(s) 826, 858
FaqI GGGAC 2 cut(s) 173, 1252
FatI CATG 9 cut(s) 133, 406, 442, 638, 742, 760, 1047, 1210, 1317
FblI GTMKAC 1 cut(s) 1386
Fnu4HI GCNGC 4 cut(s) 5, 867, 894, 1287
FokI GGATG 3 cut(s) 215, 248, 950
FriOI GRGCYC 1 cut(s) 524
Fsp4HI GCNGC 4 cut(s) 5, 867, 894, 1287
FspBI CTAG 4 cut(s) 111, 383, 402, 689
GlaI GCGC 1 cut(s) 588
GluI GCNGC 4 cut(s) 5, 867, 894, 1287
GsuI CTGGAG 2 cut(s) 48, 173
HaeII RGCGCY 1 cut(s) 590
HaeIII GGCC 3 cut(s) 230, 699, 1351
HgaI GACGC 1 cut(s) 62
HhaI GCGC 1 cut(s) 589
Hin1I GRCGYC 2 cut(s) 54, 1068
Hin1II CATG 9 cut(s) 137, 410, 446, 642, 746, 764, 1051, 1214, 1321
Hin6I GCGC 1 cut(s) 587
HinP1I GCGC 1 cut(s) 587
HinfI GANTC 4 cut(s) 596, 875, 922, 1165
HphI GGTGA 3 cut(s) 298, 917, 1362
Hpy166II GTNNAC 2 cut(s) 708, 1387
Hpy188I TCNGA 9 cut(s) 12, 235, 434, 601, 625, 1084, 1149, 1191, 1408
Hpy188III TCNNGA 6 cut(s) 27, 65, 152, 782, 1313, 1334
Hpy8I GTNNAC 2 cut(s) 708, 1387
Hpy99I CGWCG 2 cut(s) 56, 1070
HpyAV CCTTC 3 cut(s) 139, 811, 1192
HpyCH4III ACNGT 5 cut(s) 517, 1112, 1145, 1360, 1391
HpyCH4IV ACGT 2 cut(s) 1068, 1340
HpyCH4V TGCA 8 cut(s) 39, 244, 546, 722, 772, 791, 1295, 1423
HpyF10VI GCNNNNNNNGC 6 cut(s) 45, 407, 728, 893, 1292, 1307
HpyF3I CTNAG 7 cut(s) 225, 431, 711, 857, 879, 906, 1323
HpySE526I ACGT 2 cut(s) 1068, 1340
Hsp92I GRCGYC 2 cut(s) 54, 1068
Hsp92II CATG 9 cut(s) 137, 410, 446, 642, 746, 764, 1051, 1214, 1321
HspAI GCGC 1 cut(s) 587
KflI GGGWCCC 1 cut(s) 1266
Kzo9I GATC 1 cut(s) 216
LguI GCTCTTC 1 cut(s) 387
LmnI GCTCC 2 cut(s) 527, 1234
Lsp1109I GCAGC 2 cut(s) 878, 880
LweI GCATC 4 cut(s) 16, 709, 1273, 1298
MaeI CTAG 4 cut(s) 111, 383, 402, 689
MaeII ACGT 2 cut(s) 1068, 1340
MaeIII GTNAC 5 cut(s) 605, 647, 923, 1313, 1334
MalI GATC 1 cut(s) 218
MboI GATC 1 cut(s) 216
MboII GAAGA 6 cut(s) 301, 404, 770, 928, 953, 965
MhlI GDGCHC 1 cut(s) 524
MlyI GAGTC 1 cut(s) 931
MmeI TCCRAC 3 cut(s) 528, 891, 1127
Mph1103I ATGCAT 1 cut(s) 793
MseI TTAA 9 cut(s) 174, 264, 372, 833, 1002, 1092, 1242, 1247, 1432
MslI CAYNNNNRTG 2 cut(s) 441, 930
MspA1I CMGCKG 2 cut(s) 329, 869
MspCI CTTAAG 1 cut(s) 1091
MspR9I CCNGG 1 cut(s) 696
Mva1269I GAATGC 1 cut(s) 889
MvaI CCWGG 1 cut(s) 696
MwoI GCNNNNNNNGC 6 cut(s) 45, 407, 728, 893, 1292, 1307
NdeII GATC 1 cut(s) 216
NlaIII CATG 9 cut(s) 137, 410, 446, 642, 746, 764, 1051, 1214, 1321
NlaIV GGNNCC 4 cut(s) 181, 1188, 1267, 1268
NmeAIII GCCGAG 1 cut(s) 725
NmuCI GTSAC 3 cut(s) 923, 1313, 1334
NsiI ATGCAT 1 cut(s) 793
NspI RCATGY 2 cut(s) 1051, 1321
PceI AGGCCT 1 cut(s) 230
PciI ACATGT 1 cut(s) 1317
PciSI GCTCTTC 1 cut(s) 387
PcsI WCGNNNNNNNCGW 1 cut(s) 1023
PctI GAATGC 1 cut(s) 889
PfeI GAWTC 3 cut(s) 596, 875, 1165
PflFI GACNNNGTC 1 cut(s) 1067
PkrI GCNGC 4 cut(s) 6, 868, 895, 1288
PleI GAGTC 1 cut(s) 930
PpsI GAGTC 1 cut(s) 930
PpuMI RGGWCCY 1 cut(s) 1266
PscI ACATGT 1 cut(s) 1317
PsiI TTATAA 2 cut(s) 752, 801
Psp124BI GAGCTC 1 cut(s) 524
Psp5II RGGWCCY 1 cut(s) 1266
Psp6I CCWGG 1 cut(s) 694
PspGI CCWGG 1 cut(s) 694
PspN4I GGNNCC 4 cut(s) 181, 1188, 1267, 1268
PspPI GGNCC 3 cut(s) 1115, 1187, 1266
PspPPI RGGWCCY 1 cut(s) 1266
PsyI GACNNNGTC 1 cut(s) 1067
PvuII CAGCTG 1 cut(s) 329
RsaI GTAC 2 cut(s) 514, 673
RsaNI GTAC 2 cut(s) 513, 672
RseI CAYNNNNRTG 2 cut(s) 441, 930
SacI GAGCTC 1 cut(s) 524
SapI GCTCTTC 1 cut(s) 387
SaqAI TTAA 9 cut(s) 174, 264, 372, 833, 1002, 1092, 1242, 1247, 1432
SatI GCNGC 4 cut(s) 5, 867, 894, 1287
Sau3AI GATC 1 cut(s) 216
Sau96I GGNCC 3 cut(s) 1115, 1187, 1266
SchI GAGTC 1 cut(s) 931
ScrFI CCNGG 1 cut(s) 696
SduI GDGCHC 1 cut(s) 524
SfaNI GCATC 4 cut(s) 16, 709, 1273, 1298
SfcI CTRYAG 1 cut(s) 888
SinI GGWCC 3 cut(s) 1115, 1187, 1266
SmiI ATTTAAAT 1 cut(s) 1243
SmiMI CAYNNNNRTG 2 cut(s) 441, 930
SmlI CTYRAG 1 cut(s) 1091
SmoI CTYRAG 1 cut(s) 1091
SpeI ACTAGT 1 cut(s) 688
SseBI AGGCCT 1 cut(s) 230
SsiI CCGC 5 cut(s) 5, 15, 525, 869, 1286
SspI AATATT 1 cut(s) 1006
SspMI CTAG 4 cut(s) 111, 383, 402, 689
SstI GAGCTC 1 cut(s) 524
StuI AGGCCT 1 cut(s) 230
StyD4I CCNGG 1 cut(s) 694
StyI CCWWGG 2 cut(s) 183, 1182
SwaI ATTTAAAT 1 cut(s) 1243
TaaI ACNGT 5 cut(s) 517, 1112, 1145, 1360, 1391
TaiI ACGT 2 cut(s) 1071, 1343
TaqI TCGA 3 cut(s) 781, 1281, 1355
TatI WGTACW 1 cut(s) 512
TauI GCSGC 2 cut(s) 7, 1289
TfiI GAWTC 3 cut(s) 596, 875, 1165
Tru1I TTAA 9 cut(s) 174, 264, 372, 833, 1002, 1092, 1242, 1247, 1432
Tru9I TTAA 9 cut(s) 174, 264, 372, 833, 1002, 1092, 1242, 1247, 1432
TscAI CASTG 3 cut(s) 226, 715, 865
TseFI GTSAC 3 cut(s) 923, 1313, 1334
TseI GCWGC 2 cut(s) 866, 893
Tsp45I GTSAC 3 cut(s) 923, 1313, 1334
TspDTI ATGAA 6 cut(s) 122, 331, 459, 954, 1043, 1068
TspRI CASTG 3 cut(s) 226, 715, 865
Tth111I GACNNNGTC 1 cut(s) 1067
Vha464I CTTAAG 1 cut(s) 1091
VpaK11BI GGWCC 3 cut(s) 1115, 1187, 1266
XagI CCTNNNNNAGG 2 cut(s) 386, 932
XapI RAATTY 3 cut(s) 619, 901, 1203
XceI RCATGY 2 cut(s) 1051, 1321
XmiI GTMKAC 1 cut(s) 1386
XspI CTAG 4 cut(s) 111, 383, 402, 689
ZraI GACGTC 1 cut(s) 1069
Zsp2I ATGCAT 1 cut(s) 793
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.