Rw7G027110

Transaldolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0003703
Physical Location & Seq
Forward (+)
34845199 .. 34849426
4228 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G027110.1

Sequence Viewer

Length: 606 bp
ATGTCAGTGACACATCATTATAAAAGGGGGCCCATCAGAGCTACGTCATCAATTAACAGAACAATTGATGGAAAATCTAACTATTGCCTCCTAGATTATTTCCCTCAACAAAGTACTTCATTTGAGGGATCTCATTTCACACTACTACAAAAAATGAATCAGACGACACCTCTCATACGACGCTACACTGTTTTCCGTGGTGTGAATCATTTCTCATTATTGAGACGACGTTTATACAATATCACTGATTTGCTTTGTTTTGACTCAGAGGAGGTTCATACCAAAAGCTCGTTTCCTCCAACTGCTGCTACTGTGAGCTCCGCCCTACTCTTGGGTATATGCAGTCTCCCTGATACCATATTTAGATCATTGATGGTCTTTTCTTTGGTGTGGAATGCTGTGGATATGGCGCTGGCAGATTCGGAGTGTAACAAGCATGAAAATTCCGAATTGAGATTGTCATGTTTCTGTAACAAGGCTTTAGTCAATGTTGGTACTGATTTGGCAAAACTAGTTCCTGGCCGAGTGTCCACTGAGGTAGATGCACGTCTTGCTTATGACACGCATGGAATTATAAGGAAGTTACTTTCACAAATGATAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00030 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
TAL_FSA

Protein Analysis

201

Amino Acids

22.66

Weight (kDa)

8.96

Isoelectric Point (pI)

53.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAL_FSA PF00923 138 - 194 1e-05 Transaldolase/Fructose-6-phosphate aldolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 21, 575
AciI CCGC 1 cut(s) 321
AclWI GGATC 1 cut(s) 136
AcoI YGGCCR 1 cut(s) 520
AcsI RAATTY 1 cut(s) 442
AfaI GTAC 2 cut(s) 115, 496
AfiI CCNNNNNNNGG 1 cut(s) 331
AhlI ACTAGT 1 cut(s) 511
AjiI CACGTC 1 cut(s) 548
AjnI CCWGG 1 cut(s) 517
AluBI AGCT 3 cut(s) 41, 288, 318
AluI AGCT 3 cut(s) 41, 288, 318
Alw21I GWGCWC 1 cut(s) 320
Alw26I GTCTC 2 cut(s) 217, 350
AlwI GGATC 1 cut(s) 136
AoxI GGCC 2 cut(s) 29, 520
ApaI GGGCCC 1 cut(s) 33
ApeKI GCWGC 1 cut(s) 305
ApoI RAATTY 1 cut(s) 442
Asp700I GAANNNNTTC 1 cut(s) 209
AspLEI GCGC 1 cut(s) 412
AspS9I GGNCC 2 cut(s) 29, 30
BaeGI GKGCMC 1 cut(s) 33
BanII GRGCYC 2 cut(s) 33, 320
Bbv12I GWGCWC 1 cut(s) 320
BbvI GCAGC 1 cut(s) 292
BccI CCATC 3 cut(s) 41, 62, 367
BciT130I CCWGG 1 cut(s) 519
BcoDI GTCTC 2 cut(s) 217, 350
BcuI ACTAGT 1 cut(s) 511
BfaI CTAG 2 cut(s) 92, 512
BfoI RGCGCY 1 cut(s) 413
BisI GCNGC 1 cut(s) 306
BlsI GCNGC 1 cut(s) 307
BmcAI AGTACT 1 cut(s) 115
Bme1390I CCNGG 1 cut(s) 519
BmgBI CACGTC 1 cut(s) 548
BmgT120I GGNCC 2 cut(s) 29, 30
BmiI GGNNCC 2 cut(s) 30, 31
BmrFI CCNGG 1 cut(s) 519
BmsI GCATC 1 cut(s) 532
BsaJI CCNNGG 1 cut(s) 196
Bsc4I CCNNNNNNNGG 1 cut(s) 331
BseBI CCWGG 1 cut(s) 519
BseDI CCNNGG 1 cut(s) 196
BseLI CCNNNNNNNGG 1 cut(s) 331
BseMII CTCAG 2 cut(s) 279, 525
BseRI GAGGAG 1 cut(s) 284
BseSI GKGCMC 1 cut(s) 33
BseXI GCAGC 1 cut(s) 292
BshFI GGCC 2 cut(s) 31, 522
BsiHKAI GWGCWC 1 cut(s) 320
BslI CCNNNNNNNGG 1 cut(s) 331
BsmAI GTCTC 2 cut(s) 217, 350
BsmBI CGTCTC 1 cut(s) 217
BsmI GAATGC 1 cut(s) 400
BsnI GGCC 2 cut(s) 31, 522
Bsp120I GGGCCC 1 cut(s) 29
Bsp1286I GDGCHC 2 cut(s) 33, 320
Bsp143I GATC 2 cut(s) 128, 365
BspACI CCGC 1 cut(s) 321
BspANI GGCC 2 cut(s) 31, 522
BspCNI CTCAG 2 cut(s) 278, 526
BspLI GGNNCC 2 cut(s) 30, 31
BspPI GGATC 1 cut(s) 136
BssECI CCNNGG 1 cut(s) 196
BssMI GATC 2 cut(s) 128, 365
Bst2UI CCWGG 1 cut(s) 519
Bst4CI ACNGT 2 cut(s) 190, 313
BstAPI GCANNNNNTGC 1 cut(s) 551
BstC8I GCNNGC 1 cut(s) 414
BstDEI CTNAG 2 cut(s) 265, 534
BstDSI CCRYGG 1 cut(s) 196
BstH2I RGCGCY 1 cut(s) 413
BstHHI GCGC 1 cut(s) 412
BstKTI GATC 2 cut(s) 131, 368
BstMAI GTCTC 2 cut(s) 217, 350
BstMBI GATC 2 cut(s) 128, 365
BstMWI GCNNNNNNNGC 1 cut(s) 551
BstNI CCWGG 1 cut(s) 519
BstSCI CCNGG 1 cut(s) 517
BstSLI GKGCMC 1 cut(s) 33
BstV1I GCAGC 1 cut(s) 292
BstX2I RGATCY 1 cut(s) 128
BstYI RGATCY 1 cut(s) 128
BsuRI GGCC 2 cut(s) 31, 522
BtgI CCRYGG 1 cut(s) 196
BtrI CACGTC 1 cut(s) 548
BtsIMutI CAGTG 4 cut(s) 12, 186, 243, 531
Cac8I GCNNGC 1 cut(s) 414
CfoI GCGC 1 cut(s) 412
Cfr13I GGNCC 2 cut(s) 29, 30
CseI GACGC 1 cut(s) 189
Csp6I GTAC 2 cut(s) 114, 495
CviAII CATG 3 cut(s) 437, 462, 566
CviJI RGCY 6 cut(s) 31, 41, 288, 318, 479, 522
CviKI_1 RGCY 6 cut(s) 31, 41, 288, 318, 479, 522
CviQI GTAC 2 cut(s) 114, 495
DdeI CTNAG 2 cut(s) 265, 534
DpnI GATC 2 cut(s) 130, 367
DpnII GATC 2 cut(s) 128, 365
EaeI YGGCCR 1 cut(s) 520
EciI GGCGGA 1 cut(s) 310
Ecl136II GAGCTC 1 cut(s) 318
Eco24I GRGCYC 2 cut(s) 33, 320
Eco53kI GAGCTC 1 cut(s) 318
EcoICRI GAGCTC 1 cut(s) 318
EcoO109I RGGNCCY 1 cut(s) 29
EcoRII CCWGG 1 cut(s) 517
EcoT38I GRGCYC 2 cut(s) 33, 320
Esp3I CGTCTC 1 cut(s) 217
FaeI CATG 3 cut(s) 440, 465, 569
FatI CATG 3 cut(s) 436, 461, 565
Fnu4HI GCNGC 1 cut(s) 306
FriOI GRGCYC 2 cut(s) 33, 320
Fsp4HI GCNGC 1 cut(s) 306
FspBI CTAG 2 cut(s) 92, 512
GlaI GCGC 1 cut(s) 411
GluI GCNGC 1 cut(s) 306
HaeII RGCGCY 1 cut(s) 413
HaeIII GGCC 2 cut(s) 31, 522
HgaI GACGC 1 cut(s) 189
HhaI GCGC 1 cut(s) 412
Hin1II CATG 3 cut(s) 440, 465, 569
Hin6I GCGC 1 cut(s) 410
HinP1I GCGC 1 cut(s) 410
HinfI GANTC 4 cut(s) 157, 205, 263, 419
Hpy166II GTNNAC 1 cut(s) 531
Hpy188I TCNGA 5 cut(s) 38, 162, 268, 424, 448
Hpy8I GTNNAC 1 cut(s) 531
Hpy99I CGWCG 2 cut(s) 183, 231
HpyCH4III ACNGT 2 cut(s) 190, 313
HpyCH4IV ACGT 3 cut(s) 44, 229, 547
HpyCH4V TGCA 2 cut(s) 342, 545
HpyF10VI GCNNNNNNNGC 1 cut(s) 551
HpyF3I CTNAG 2 cut(s) 265, 534
HpySE526I ACGT 3 cut(s) 44, 229, 547
Hsp92II CATG 3 cut(s) 440, 465, 569
HspAI GCGC 1 cut(s) 410
Kzo9I GATC 2 cut(s) 128, 365
LmnI GCTCC 1 cut(s) 323
LpnPI CCDG 4 cut(s) 363, 398, 504, 531
Lsp1109I GCAGC 1 cut(s) 292
LweI GCATC 1 cut(s) 532
MaeI CTAG 2 cut(s) 92, 512
MaeII ACGT 3 cut(s) 44, 229, 547
MaeIII GTNAC 4 cut(s) 7, 428, 470, 582
MalI GATC 2 cut(s) 130, 367
MboI GATC 2 cut(s) 128, 365
MfeI CAATTG 1 cut(s) 63
MflI RGATCY 1 cut(s) 128
MhlI GDGCHC 2 cut(s) 33, 320
MluCI AATT 6 cut(s) 51, 63, 442, 449, 570, 600
MlyI GAGTC 1 cut(s) 257
MmeI TCCRAC 1 cut(s) 323
MnlI CCTC 8 cut(s) 98, 114, 118, 180, 262, 265, 306, 529
MroXI GAANNNNTTC 1 cut(s) 209
MseI TTAA 1 cut(s) 54
MspR9I CCNGG 1 cut(s) 519
MunI CAATTG 1 cut(s) 63
Mva1269I GAATGC 1 cut(s) 400
MvaI CCWGG 1 cut(s) 519
MwoI GCNNNNNNNGC 1 cut(s) 551
NdeII GATC 2 cut(s) 128, 365
NlaIII CATG 3 cut(s) 440, 465, 569
NlaIV GGNNCC 2 cut(s) 30, 31
NmeAIII GCCGAG 1 cut(s) 548
NmuCI GTSAC 1 cut(s) 7
PctI GAATGC 1 cut(s) 400
PdmI GAANNNNTTC 1 cut(s) 209
PfeI GAWTC 3 cut(s) 157, 205, 419
PkrI GCNGC 1 cut(s) 307
PleI GAGTC 1 cut(s) 257
PpsI GAGTC 1 cut(s) 257
PsiI TTATAA 2 cut(s) 21, 575
Psp124BI GAGCTC 1 cut(s) 320
Psp6I CCWGG 1 cut(s) 517
PspGI CCWGG 1 cut(s) 517
PspN4I GGNNCC 2 cut(s) 30, 31
PspOMI GGGCCC 1 cut(s) 29
PspPI GGNCC 2 cut(s) 29, 30
PsuI RGATCY 1 cut(s) 128
RsaI GTAC 2 cut(s) 115, 496
RsaNI GTAC 2 cut(s) 114, 495
SacI GAGCTC 1 cut(s) 320
SaqAI TTAA 1 cut(s) 54
SatI GCNGC 1 cut(s) 306
Sau3AI GATC 2 cut(s) 128, 365
Sau96I GGNCC 2 cut(s) 29, 30
ScaI AGTACT 1 cut(s) 115
SchI GAGTC 1 cut(s) 257
ScrFI CCNGG 1 cut(s) 519
SduI GDGCHC 2 cut(s) 33, 320
SetI ASST 9 cut(s) 43, 47, 172, 232, 276, 290, 320, 540, 550
SfaNI GCATC 1 cut(s) 532
SpeI ACTAGT 1 cut(s) 511
Sse9I AATT 6 cut(s) 51, 63, 442, 449, 570, 600
SsiI CCGC 1 cut(s) 321
SspMI CTAG 2 cut(s) 92, 512
SstI GAGCTC 1 cut(s) 320
StyD4I CCNGG 1 cut(s) 517
TaaI ACNGT 2 cut(s) 190, 313
TaiI ACGT 3 cut(s) 47, 232, 550
TasI AATT 6 cut(s) 51, 63, 442, 449, 570, 600
TatI WGTACW 1 cut(s) 113
TfiI GAWTC 3 cut(s) 157, 205, 419
Tru1I TTAA 1 cut(s) 54
Tru9I TTAA 1 cut(s) 54
TscAI CASTG 4 cut(s) 12, 193, 250, 538
TseFI GTSAC 1 cut(s) 7
TseI GCWGC 1 cut(s) 305
Tsp45I GTSAC 1 cut(s) 7
TspDTI ATGAA 4 cut(s) 108, 170, 266, 453
TspGWI ACGGA 1 cut(s) 185
TspRI CASTG 4 cut(s) 12, 193, 250, 538
XapI RAATTY 1 cut(s) 442
XmnI GAANNNNTTC 1 cut(s) 209
XspI CTAG 2 cut(s) 92, 512
ZrmI AGTACT 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.