RNA polymerase III
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr2g0097261 RchiOBHm_Chr4g0388121 RchiOBHm_Chr6g0254981 RchiOBHm_Chr6g0270571 |
| rosa_laevigata | RLG00000013625 RLG00000016400 RLG00000027818 RLG00000028940 RLG00000033711 RLG00000035539 RLG00000035931 |
| rosa_multiflora | Rmu_sc0000322.1_g000027 |
| rosa_roxburghii | Rroxscaffold_1G00026630 Rroxscaffold_5G00347830 |
| rosa_rugosa | Rorug02G0295700 Rorug03G0217900 Rorug04G0030800 Rorug04G0257000 Rorug05G0516900 Rorug06G0100200 Rorug06G0468100 |
| rosa_samantha | Rh1AG155900 Rh1AG219700 Rh1DG187200 Rh2BG424900 Rh4AG076000 Rh4BG015100 Rh4DG099500 Rh7CG342400 Rh7DG317900 Rh7DG373200 |
| rosa_wichuraiana | Rw3G022170 Rw7G027100 Rw7G027110 Rw7G031460 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 2 cut(s) | 46, 323 |
| AcuI | CTGAAG | 1 cut(s) | 171 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 172 |
| AgsI | TTSAA | 1 cut(s) | 322 |
| AluBI | AGCT | 2 cut(s) | 137, 185 |
| AluI | AGCT | 2 cut(s) | 137, 185 |
| Alw26I | GTCTC | 1 cut(s) | 289 |
| ApeKI | GCWGC | 1 cut(s) | 89 |
| ApoI | RAATTY | 2 cut(s) | 46, 323 |
| AsuC2I | CCSGG | 1 cut(s) | 167 |
| AxyI | CCTNAGG | 1 cut(s) | 67 |
| BbvI | GCAGC | 1 cut(s) | 76 |
| BceAI | ACGGC | 1 cut(s) | 11 |
| BcnI | CCSGG | 1 cut(s) | 167 |
| BcoDI | GTCTC | 1 cut(s) | 289 |
| BfaI | CTAG | 2 cut(s) | 186, 331 |
| BisI | GCNGC | 1 cut(s) | 90 |
| BlsI | GCNGC | 1 cut(s) | 91 |
| Bme1390I | CCNGG | 1 cut(s) | 167 |
| BmiI | GGNNCC | 1 cut(s) | 25 |
| BmrFI | CCNGG | 1 cut(s) | 167 |
| BmsI | GCATC | 1 cut(s) | 83 |
| BpuMI | CCSGG | 1 cut(s) | 167 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 194, 224 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 172 |
| Bse21I | CCTNAGG | 1 cut(s) | 67 |
| BseGI | GGATG | 1 cut(s) | 88 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 172 |
| BseRI | GAGGAG | 2 cut(s) | 133, 185 |
| BseXI | GCAGC | 1 cut(s) | 76 |
| BsiSI | CCGG | 1 cut(s) | 167 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 172 |
| BsmAI | GTCTC | 1 cut(s) | 289 |
| BspLI | GGNNCC | 1 cut(s) | 25 |
| BspQI | GCTCTTC | 1 cut(s) | 171 |
| Bst6I | CTCTTC | 1 cut(s) | 171 |
| BstC8I | GCNNGC | 1 cut(s) | 183 |
| BstDEI | CTNAG | 1 cut(s) | 67 |
| BstF5I | GGATG | 1 cut(s) | 88 |
| BstMAI | GTCTC | 1 cut(s) | 289 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 191 |
| BstSCI | CCNGG | 1 cut(s) | 165 |
| BstV1I | GCAGC | 1 cut(s) | 76 |
| Bsu36I | CCTNAGG | 1 cut(s) | 67 |
| BtsCI | GGATG | 1 cut(s) | 88 |
| Cac8I | GCNNGC | 1 cut(s) | 183 |
| CviAII | CATG | 2 cut(s) | 191, 227 |
| CviJI | RGCY | 6 cut(s) | 26, 137, 149, 185, 250, 276 |
| CviKI_1 | RGCY | 6 cut(s) | 26, 137, 149, 185, 250, 276 |
| DdeI | CTNAG | 1 cut(s) | 67 |
| Eam1104I | CTCTTC | 1 cut(s) | 171 |
| EarI | CTCTTC | 1 cut(s) | 171 |
| Eco57I | CTGAAG | 1 cut(s) | 171 |
| Eco81I | CCTNAGG | 1 cut(s) | 67 |
| EcoRI | GAATTC | 1 cut(s) | 46 |
| FaeI | CATG | 2 cut(s) | 194, 230 |
| FaiI | YATR | 7 cut(s) | 60, 106, 128, 158, 192, 218, 228 |
| FatI | CATG | 2 cut(s) | 190, 226 |
| Fnu4HI | GCNGC | 1 cut(s) | 90 |
| FokI | GGATG | 1 cut(s) | 95 |
| Fsp4HI | GCNGC | 1 cut(s) | 90 |
| FspBI | CTAG | 2 cut(s) | 186, 331 |
| GluI | GCNGC | 1 cut(s) | 90 |
| HapII | CCGG | 1 cut(s) | 167 |
| Hin1II | CATG | 2 cut(s) | 194, 230 |
| HinfI | GANTC | 1 cut(s) | 297 |
| HpaII | CCGG | 1 cut(s) | 167 |
| Hpy188I | TCNGA | 1 cut(s) | 82 |
| Hpy188III | TCNNGA | 1 cut(s) | 115 |
| HpyCH4IV | ACGT | 1 cut(s) | 220 |
| HpyCH4V | TGCA | 1 cut(s) | 62 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 191 |
| HpyF3I | CTNAG | 1 cut(s) | 67 |
| HpySE526I | ACGT | 1 cut(s) | 220 |
| Hsp92II | CATG | 2 cut(s) | 194, 230 |
| LguI | GCTCTTC | 1 cut(s) | 171 |
| LmnI | GCTCC | 1 cut(s) | 23 |
| LpnPI | CCDG | 1 cut(s) | 180 |
| Lsp1109I | GCAGC | 1 cut(s) | 76 |
| LweI | GCATC | 1 cut(s) | 83 |
| MaeI | CTAG | 2 cut(s) | 186, 331 |
| MaeII | ACGT | 1 cut(s) | 220 |
| MboII | GAAGA | 3 cut(s) | 55, 89, 188 |
| MluCI | AATT | 3 cut(s) | 30, 46, 323 |
| MlyI | GAGTC | 1 cut(s) | 291 |
| MnlI | CCTC | 7 cut(s) | 111, 114, 163, 166, 198, 234, 266 |
| MspI | CCGG | 1 cut(s) | 167 |
| MspR9I | CCNGG | 1 cut(s) | 167 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 191 |
| NciI | CCSGG | 1 cut(s) | 167 |
| NlaIII | CATG | 2 cut(s) | 194, 230 |
| NlaIV | GGNNCC | 1 cut(s) | 25 |
| PciSI | GCTCTTC | 1 cut(s) | 171 |
| PkrI | GCNGC | 1 cut(s) | 91 |
| PleI | GAGTC | 1 cut(s) | 291 |
| PpsI | GAGTC | 1 cut(s) | 291 |
| PspN4I | GGNNCC | 1 cut(s) | 25 |
| SapI | GCTCTTC | 1 cut(s) | 171 |
| SatI | GCNGC | 1 cut(s) | 90 |
| SchI | GAGTC | 1 cut(s) | 291 |
| ScrFI | CCNGG | 1 cut(s) | 167 |
| SetI | ASST | 5 cut(s) | 68, 125, 139, 187, 223 |
| SfaNI | GCATC | 1 cut(s) | 83 |
| Sse9I | AATT | 3 cut(s) | 30, 46, 323 |
| SspMI | CTAG | 2 cut(s) | 186, 331 |
| StyD4I | CCNGG | 1 cut(s) | 165 |
| TaiI | ACGT | 1 cut(s) | 223 |
| TaqI | TCGA | 2 cut(s) | 114, 309 |
| TasI | AATT | 3 cut(s) | 30, 46, 323 |
| TseI | GCWGC | 1 cut(s) | 89 |
| TspDTI | ATGAA | 2 cut(s) | 115, 243 |
| XapI | RAATTY | 2 cut(s) | 46, 323 |
| XspI | CTAG | 2 cut(s) | 186, 331 |