Rw3G022170

Transaldolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0003703
Physical Location & Seq
Reverse (-)
27075928 .. 27080346
4419 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G022170.1

Sequence Viewer

Length: 519 bp
ATGAAGACCACCGATCTCCAGCCTCTATCTTCGGGTCTCCGGCCTTTCTCAGCCATCTCTGAGTCTCTCTCTCCTCCGAGCTCTGGTATATTTGTAAGTCAAAACATTTTCACCGACATTCCCTCCAACATTTCCCTCCATTCTCTCCCCCAAATCTATTTCCCTCTCACCAGGCAGTTTCCTCCAACTGCTGCTACTGTGAGCTCTGCCCTACTCTTGGGTATATGCAGTCTCCCTGATACCATATTTAGAAATGCTGTGGATATGGCGCTGGCAGATTCGGAGTGTAACAAGCATGAGAATTCCGAATTGAGATTGTCATGTTTCTGTAACAAGGCTTTAGTCAATGTTGGTACTGATTTGGCAAAACTAGTTCCTGGCCGAGTGTCCACTGAGGTAGATGCATGTCTTGCTTATGACACGCATGGAATTATAAGGAAGGTACTGGCTTTTCTTTGTAACTTAACTTTTTTCCTTTTTCTTTTCAAAGATGATGCTAAAGCATTGGAATTCTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00030 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
TAL_FSA

Protein Analysis

172

Amino Acids

18.81

Weight (kDa)

5.52

Isoelectric Point (pI)

54.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAL_FSA PF00923 81 - 147 2.7e-06 Transaldolase/Fructose-6-phosphate aldolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 434
AcoI YGGCCR 1 cut(s) 379
AcsI RAATTY 2 cut(s) 301, 509
AfaI GTAC 2 cut(s) 355, 444
AfiI CCNNNNNNNGG 2 cut(s) 83, 217
AgsI TTSAA 1 cut(s) 487
AhlI ACTAGT 1 cut(s) 370
AjnI CCWGG 2 cut(s) 170, 376
AluBI AGCT 2 cut(s) 81, 204
AluI AGCT 2 cut(s) 81, 204
Alw21I GWGCWC 2 cut(s) 83, 206
Alw26I GTCTC 3 cut(s) 41, 69, 236
AoxI GGCC 2 cut(s) 41, 379
ApeKI GCWGC 1 cut(s) 191
ApoI RAATTY 2 cut(s) 301, 509
AspLEI GCGC 1 cut(s) 271
AsuHPI GGTGA 2 cut(s) 103, 160
BanII GRGCYC 2 cut(s) 83, 206
BbsI GAAGAC 1 cut(s) 11
Bbv12I GWGCWC 2 cut(s) 83, 206
BbvI GCAGC 1 cut(s) 178
BccI CCATC 1 cut(s) 62
BciT130I CCWGG 2 cut(s) 172, 378
BcoDI GTCTC 3 cut(s) 41, 69, 236
BcuI ACTAGT 1 cut(s) 370
BfaI CTAG 1 cut(s) 371
BfoI RGCGCY 1 cut(s) 272
BisI GCNGC 1 cut(s) 192
BlsI GCNGC 1 cut(s) 193
Bme1390I CCNGG 2 cut(s) 172, 378
BmrFI CCNGG 2 cut(s) 172, 378
BmsI GCATC 2 cut(s) 391, 484
BpiI GAAGAC 1 cut(s) 11
BplI GAGNNNNNCTC 2 cut(s) 53, 85
BsaI GGTCTC 1 cut(s) 41
BsaXI ACNNNNNCTCC 2 cut(s) 107, 137
Bsc4I CCNNNNNNNGG 2 cut(s) 83, 217
Bse1I ACTGG 1 cut(s) 450
BseBI CCWGG 2 cut(s) 172, 378
BseLI CCNNNNNNNGG 2 cut(s) 83, 217
BseMII CTCAG 3 cut(s) 51, 63, 384
BseNI ACTGG 1 cut(s) 450
BseRI GAGGAG 1 cut(s) 63
BseXI GCAGC 1 cut(s) 178
BshFI GGCC 2 cut(s) 43, 381
BsiHKAI GWGCWC 2 cut(s) 83, 206
BsiSI CCGG 1 cut(s) 40
BslI CCNNNNNNNGG 2 cut(s) 83, 217
BsmAI GTCTC 3 cut(s) 41, 69, 236
BsnI GGCC 2 cut(s) 43, 381
Bso31I GGTCTC 1 cut(s) 41
Bsp1286I GDGCHC 2 cut(s) 83, 206
Bsp143I GATC 1 cut(s) 13
BspANI GGCC 2 cut(s) 43, 381
BspCNI CTCAG 3 cut(s) 52, 62, 385
BspTNI GGTCTC 1 cut(s) 41
BsrI ACTGG 1 cut(s) 450
BssMI GATC 1 cut(s) 13
Bst2UI CCWGG 2 cut(s) 172, 378
Bst4CI ACNGT 1 cut(s) 199
BstAPI GCANNNNNTGC 1 cut(s) 410
BstC8I GCNNGC 1 cut(s) 273
BstDEI CTNAG 3 cut(s) 49, 60, 393
BstH2I RGCGCY 1 cut(s) 272
BstHHI GCGC 1 cut(s) 271
BstKTI GATC 1 cut(s) 16
BstMAI GTCTC 3 cut(s) 41, 69, 236
BstMBI GATC 1 cut(s) 13
BstMWI GCNNNNNNNGC 1 cut(s) 410
BstNI CCWGG 2 cut(s) 172, 378
BstNSI RCATGY 1 cut(s) 408
BstSCI CCNGG 2 cut(s) 170, 376
BstV1I GCAGC 1 cut(s) 178
BstV2I GAAGAC 1 cut(s) 11
BsuRI GGCC 2 cut(s) 43, 381
BtsIMutI CAGTG 1 cut(s) 390
Cac8I GCNNGC 1 cut(s) 273
CfoI GCGC 1 cut(s) 271
Csp6I GTAC 2 cut(s) 354, 443
CviAII CATG 4 cut(s) 296, 321, 405, 425
CviJI RGCY 8 cut(s) 22, 43, 53, 81, 204, 338, 381, 449
CviKI_1 RGCY 8 cut(s) 22, 43, 53, 81, 204, 338, 381, 449
CviQI GTAC 2 cut(s) 354, 443
DdeI CTNAG 3 cut(s) 49, 60, 393
DpnI GATC 1 cut(s) 15
DpnII GATC 1 cut(s) 13
EaeI YGGCCR 1 cut(s) 379
Ecl136II GAGCTC 2 cut(s) 81, 204
Eco24I GRGCYC 2 cut(s) 83, 206
Eco31I GGTCTC 1 cut(s) 41
Eco53kI GAGCTC 2 cut(s) 81, 204
EcoICRI GAGCTC 2 cut(s) 81, 204
EcoRI GAATTC 2 cut(s) 301, 509
EcoRII CCWGG 2 cut(s) 170, 376
EcoT22I ATGCAT 1 cut(s) 406
EcoT38I GRGCYC 2 cut(s) 83, 206
FaeI CATG 4 cut(s) 299, 324, 408, 428
FatI CATG 4 cut(s) 295, 320, 404, 424
Fnu4HI GCNGC 1 cut(s) 192
FriOI GRGCYC 2 cut(s) 83, 206
Fsp4HI GCNGC 1 cut(s) 192
FspBI CTAG 1 cut(s) 371
GlaI GCGC 1 cut(s) 270
GluI GCNGC 1 cut(s) 192
HaeII RGCGCY 1 cut(s) 272
HaeIII GGCC 2 cut(s) 43, 381
HapII CCGG 1 cut(s) 40
HhaI GCGC 1 cut(s) 271
Hin1II CATG 4 cut(s) 299, 324, 408, 428
Hin6I GCGC 1 cut(s) 269
HinP1I GCGC 1 cut(s) 269
HinfI GANTC 2 cut(s) 62, 278
HpaII CCGG 1 cut(s) 40
HphI GGTGA 2 cut(s) 103, 160
Hpy166II GTNNAC 1 cut(s) 390
Hpy188I TCNGA 4 cut(s) 61, 78, 283, 307
Hpy8I GTNNAC 1 cut(s) 390
HpyAV CCTTC 1 cut(s) 433
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4V TGCA 2 cut(s) 228, 404
HpyF10VI GCNNNNNNNGC 1 cut(s) 410
HpyF3I CTNAG 3 cut(s) 49, 60, 393
Hsp92II CATG 4 cut(s) 299, 324, 408, 428
HspAI GCGC 1 cut(s) 269
Kzo9I GATC 1 cut(s) 13
Lsp1109I GCAGC 1 cut(s) 178
LweI GCATC 2 cut(s) 391, 484
MaeI CTAG 1 cut(s) 371
MaeIII GTNAC 3 cut(s) 287, 329, 458
MalI GATC 1 cut(s) 15
MboI GATC 1 cut(s) 13
MboII GAAGA 2 cut(s) 16, 21
MhlI GDGCHC 2 cut(s) 83, 206
MluCI AATT 4 cut(s) 301, 308, 429, 509
MlyI GAGTC 1 cut(s) 71
MmeI TCCRAC 2 cut(s) 150, 209
MnlI CCTC 7 cut(s) 33, 84, 133, 146, 174, 192, 388
Mph1103I ATGCAT 1 cut(s) 406
MseI TTAA 1 cut(s) 464
MspI CCGG 1 cut(s) 40
MspR9I CCNGG 2 cut(s) 172, 378
MvaI CCWGG 2 cut(s) 172, 378
MwoI GCNNNNNNNGC 1 cut(s) 410
NdeII GATC 1 cut(s) 13
NlaIII CATG 4 cut(s) 299, 324, 408, 428
NmeAIII GCCGAG 1 cut(s) 407
NsiI ATGCAT 1 cut(s) 406
NspI RCATGY 1 cut(s) 408
PfeI GAWTC 1 cut(s) 278
PkrI GCNGC 1 cut(s) 193
PleI GAGTC 1 cut(s) 70
PpsI GAGTC 1 cut(s) 70
PsiI TTATAA 1 cut(s) 434
Psp124BI GAGCTC 2 cut(s) 83, 206
Psp6I CCWGG 2 cut(s) 170, 376
PspGI CCWGG 2 cut(s) 170, 376
RsaI GTAC 2 cut(s) 355, 444
RsaNI GTAC 2 cut(s) 354, 443
SacI GAGCTC 2 cut(s) 83, 206
SaqAI TTAA 1 cut(s) 464
SatI GCNGC 1 cut(s) 192
Sau3AI GATC 1 cut(s) 13
SchI GAGTC 1 cut(s) 71
ScrFI CCNGG 2 cut(s) 172, 378
SduI GDGCHC 2 cut(s) 83, 206
SetI ASST 4 cut(s) 83, 206, 399, 444
SfaNI GCATC 2 cut(s) 391, 484
SpeI ACTAGT 1 cut(s) 370
Sse9I AATT 4 cut(s) 301, 308, 429, 509
SspMI CTAG 1 cut(s) 371
SstI GAGCTC 2 cut(s) 83, 206
StyD4I CCNGG 2 cut(s) 170, 376
TaaI ACNGT 1 cut(s) 199
TasI AATT 4 cut(s) 301, 308, 429, 509
TfiI GAWTC 1 cut(s) 278
Tru1I TTAA 1 cut(s) 464
Tru9I TTAA 1 cut(s) 464
TscAI CASTG 1 cut(s) 397
TseI GCWGC 1 cut(s) 191
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 397
XapI RAATTY 2 cut(s) 301, 509
XceI RCATGY 1 cut(s) 408
XspI CTAG 1 cut(s) 371
Zsp2I ATGCAT 1 cut(s) 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.