Rorug06G0468100

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0001041
Physical Location & Seq
Forward (+)
59235683 .. 59238825
3143 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0468100.1

Sequence Viewer

Length: 939 bp
ATGTCAGGGATGGAGAGGCTACAGAGGATGTTCGCCGGCGCCGGAGGAGCATTGGGCCACCCACCGCCGGATTCGCCCACTCTCGATTCCTCCGAGCAGGTCTACATCTCCTCACTCGCGCTGTTGAAGATGCTCAAGCACGGAAGAGCGGGGGTTCCTATGGAGGTCATGGGCTTGATGCTGGGAGAGTTTGTGGATGAGTACACTGTTCGAGTTGTGGATGTCTTTGCTATGCCGCAGAGTGGTACTGGTGTTAGTGTCGAAGCAGTCGATCATGTTTTCCAGACTAACATGCTCGATATGCTTAAGCAGACTGGAAGACCGGAGATGGTTGTAGGGTGGTACCATTCGCATCCTGGATTTGGCTGTTGGCTATCTGGTGTGGACATTAATACGCAGCAGAGCTTTGAAGCTTTGAATCAACGTGCTGTTGCTGTGGTGGTGGATCCAATTCAGAGTGTGAAGGGGAAGGTGGTCATTGATGCCTTCCGCCTTATCAACCCACAGACTATGATGCTCGGTCAAGAACCTCGGCAGACCACATCCAATCTGGGCCATCTTAATAAACCATCTATTCAAGCTTTGATCCATGGGTTAAACCGGCATTATTACTCTATAGCAATCAATTACAGGAAGAATGAACTCGAGGAGAAGATGTTGCTTAACCTTCATAAGAAGAAATGGACTGATGGGCTGACCCTCAAGCGTTTTGATACTCATTCAAAAACAAATGAGCAAACTGTTCAGGAGATGTTGAGCCTAGCTGTCAAATACAACAAGGCCGTGCAGGAGGAGGATGAGTTGTCACCAGAGAAGCTTGCAATTGCAAATGTGGGAAGACAAGATGCCAAGAAGCACCTTGAAGAACATGTCTCCAACTTAATGTCCTCAAACATAGTGCAGACCTTGGGAACAATGCTCGATACTGTTGTGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

312

Amino Acids

34.77

Weight (kDa)

6.31

Isoelectric Point (pI)

40.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
JAB PF01398 30 - 141 9e-35 JAB1/Mov34/MPN/PAD-1 ubiquitin protease
Prok-JAB PF14464 41 - 131 1.6e-06 Prokaryotic homologs of the JAB domain
RPN11_C PF23594 231 - 310 1.7e-35 26S proteasome regulatory subunit RPN11 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 88
Acc65I GGTACC 1 cut(s) 342
AccB1I GGYRCC 2 cut(s) 38, 342
AccBSI CCGCTC 1 cut(s) 149
AccI GTMKAC 1 cut(s) 102
AccII CGCG 1 cut(s) 119
AciI CCGC 4 cut(s) 65, 149, 236, 490
AclWI GGATC 3 cut(s) 440, 453, 580
AcyI GRCGYC 1 cut(s) 39
AfaI GTAC 3 cut(s) 203, 247, 344
AfiI CCNNNNNNNGG 3 cut(s) 67, 242, 362
AflII CTTAAG 1 cut(s) 305
AflIII ACRYGT 1 cut(s) 868
AgsI TTSAA 6 cut(s) 127, 410, 418, 578, 723, 863
AjnI CCWGG 1 cut(s) 355
AluBI AGCT 5 cut(s) 405, 413, 581, 764, 817
AluI AGCT 5 cut(s) 405, 413, 581, 764, 817
Alw26I GTCTC 1 cut(s) 877
AlwI GGATC 3 cut(s) 440, 453, 580
Ama87I CYCGRG 1 cut(s) 644
AoxI GGCC 3 cut(s) 55, 553, 780
ApeKI GCWGC 1 cut(s) 397
AseI ATTAAT 1 cut(s) 390
Asp718I GGTACC 1 cut(s) 342
AspLEI GCGC 2 cut(s) 41, 121
AspS9I GGNCC 2 cut(s) 55, 553
AsuHPI GGTGA 1 cut(s) 798
AvaI CYCGRG 1 cut(s) 644
BaeI ACNNNNGTAYC 3 cut(s) 237, 270, 915
BamHI GGATCC 1 cut(s) 445
BanI GGYRCC 2 cut(s) 38, 342
BbsI GAAGAC 2 cut(s) 325, 844
BbvI GCAGC 1 cut(s) 409
BccI CCATC 5 cut(s) 4, 322, 564, 577, 683
BceAI ACGGC 1 cut(s) 767
BciT130I CCWGG 1 cut(s) 357
BcoDI GTCTC 1 cut(s) 877
BfaI CTAG 2 cut(s) 761, 937
BfmI CTRYAG 2 cut(s) 20, 615
BfoI RGCGCY 1 cut(s) 42
BfrI CTTAAG 1 cut(s) 305
BfuAI ACCTGC 1 cut(s) 88
BisI GCNGC 2 cut(s) 236, 398
BlsI GCNGC 2 cut(s) 237, 399
Bme1390I CCNGG 1 cut(s) 357
BmeT110I CYCGRG 1 cut(s) 644
BmgT120I GGNCC 2 cut(s) 55, 553
BmiI GGNNCC 4 cut(s) 40, 156, 344, 447
BmrFI CCNGG 1 cut(s) 357
BmsI GCATC 6 cut(s) 120, 168, 361, 472, 504, 835
BpiI GAAGAC 2 cut(s) 325, 844
BpuEI CTTGAG 2 cut(s) 119, 686
BsaHI GRCGYC 1 cut(s) 39
BsaJI CCNNGG 3 cut(s) 530, 589, 906
BsaWI WCCGGW 1 cut(s) 322
BsaXI ACNNNNNCTCC 6 cut(s) 177, 207, 641, 671, 785, 815
Bsc4I CCNNNNNNNGG 3 cut(s) 67, 242, 362
Bse118I RCCGGY 2 cut(s) 35, 600
Bse1I ACTGG 2 cut(s) 253, 319
BseBI CCWGG 1 cut(s) 357
BseDI CCNNGG 3 cut(s) 530, 589, 906
BseGI GGATG 7 cut(s) 15, 33, 202, 226, 352, 542, 802
BseLI CCNNNNNNNGG 3 cut(s) 67, 242, 362
BseNI ACTGG 2 cut(s) 253, 319
BseRI GAGGAG 4 cut(s) 60, 100, 662, 806
BseXI GCAGC 1 cut(s) 409
BseYI CCCAGC 1 cut(s) 181
BsgI GTGCAG 2 cut(s) 806, 920
Bsh1236I CGCG 1 cut(s) 119
BshFI GGCC 3 cut(s) 57, 555, 782
BshNI GGYRCC 2 cut(s) 38, 342
BsiHKCI CYCGRG 1 cut(s) 644
BsiSI CCGG 5 cut(s) 36, 42, 68, 323, 601
BslI CCNNNNNNNGG 3 cut(s) 67, 242, 362
BsmAI GTCTC 1 cut(s) 877
BsnI GGCC 3 cut(s) 57, 555, 782
BsoBI CYCGRG 1 cut(s) 644
Bsp143I GATC 3 cut(s) 271, 445, 585
Bsp19I CCATGG 1 cut(s) 589
BspACI CCGC 4 cut(s) 65, 149, 236, 490
BspANI GGCC 3 cut(s) 57, 555, 782
BspFNI CGCG 1 cut(s) 119
BspLI GGNNCC 4 cut(s) 40, 156, 344, 447
BspMI ACCTGC 1 cut(s) 88
BspPI GGATC 3 cut(s) 440, 453, 580
BspQI GCTCTTC 1 cut(s) 139
BspT107I GGYRCC 2 cut(s) 38, 342
BspTI CTTAAG 1 cut(s) 305
BsrBI CCGCTC 1 cut(s) 149
BsrFI RCCGGY 2 cut(s) 35, 600
BsrI ACTGG 2 cut(s) 253, 319
BssAI RCCGGY 2 cut(s) 35, 600
BssECI CCNNGG 3 cut(s) 530, 589, 906
BssMI GATC 3 cut(s) 271, 445, 585
BssNI GRCGYC 1 cut(s) 39
BssT1I CCWWGG 2 cut(s) 589, 906
Bst2UI CCWGG 1 cut(s) 357
Bst4CI ACNGT 3 cut(s) 208, 742, 928
Bst6I CTCTTC 1 cut(s) 139
BstACI GRCGYC 1 cut(s) 39
BstAFI CTTAAG 1 cut(s) 305
BstC8I GCNNGC 2 cut(s) 37, 819
BstDSI CCRYGG 1 cut(s) 589
BstF5I GGATG 7 cut(s) 15, 33, 202, 226, 352, 542, 802
BstFNI CGCG 1 cut(s) 119
BstH2I RGCGCY 1 cut(s) 42
BstHHI GCGC 2 cut(s) 41, 121
BstKTI GATC 3 cut(s) 274, 448, 588
BstMAI GTCTC 1 cut(s) 877
BstMBI GATC 3 cut(s) 271, 445, 585
BstMWI GCNNNNNNNGC 3 cut(s) 47, 73, 301
BstNI CCWGG 1 cut(s) 357
BstNSI RCATGY 2 cut(s) 295, 872
BstSCI CCNGG 1 cut(s) 355
BstSFI CTRYAG 2 cut(s) 20, 615
BstUI CGCG 1 cut(s) 119
BstV1I GCAGC 1 cut(s) 409
BstV2I GAAGAC 2 cut(s) 325, 844
BstX2I RGATCY 1 cut(s) 445
BstYI RGATCY 1 cut(s) 445
BsuRI GGCC 3 cut(s) 57, 555, 782
BtgI CCRYGG 1 cut(s) 589
BtsCI GGATG 7 cut(s) 15, 33, 202, 226, 352, 542, 802
BtsIMutI CAGTG 1 cut(s) 204
BveI ACCTGC 1 cut(s) 88
Cac8I GCNNGC 2 cut(s) 37, 819
CfoI GCGC 2 cut(s) 41, 121
Cfr10I RCCGGY 2 cut(s) 35, 600
Cfr13I GGNCC 2 cut(s) 55, 553
Csp6I GTAC 3 cut(s) 202, 246, 343
CviAII CATG 5 cut(s) 169, 275, 292, 590, 869
CviQI GTAC 3 cut(s) 202, 246, 343
DinI GGCGCC 1 cut(s) 40
DpnI GATC 3 cut(s) 273, 447, 587
DpnII GATC 3 cut(s) 271, 445, 585
Eam1104I CTCTTC 1 cut(s) 139
EarI CTCTTC 1 cut(s) 139
EciI GGCGGA 1 cut(s) 479
Eco130I CCWWGG 2 cut(s) 589, 906
Eco88I CYCGRG 1 cut(s) 644
EcoRII CCWGG 1 cut(s) 355
EcoT14I CCWWGG 2 cut(s) 589, 906
EgeI GGCGCC 1 cut(s) 40
EheI GGCGCC 1 cut(s) 40
ErhI CCWWGG 2 cut(s) 589, 906
FaeI CATG 5 cut(s) 172, 278, 295, 593, 872
FatI CATG 5 cut(s) 168, 274, 291, 589, 868
FauI CCCGC 1 cut(s) 142
FblI GTMKAC 1 cut(s) 102
Fnu4HI GCNGC 2 cut(s) 236, 398
FokI GGATG 7 cut(s) 22, 40, 209, 233, 339, 529, 809
Fsp4HI GCNGC 2 cut(s) 236, 398
FspBI CTAG 2 cut(s) 761, 937
GlaI GCGC 2 cut(s) 40, 120
GluI GCNGC 2 cut(s) 236, 398
GsaI CCCAGC 1 cut(s) 185
HaeII RGCGCY 1 cut(s) 42
HaeIII GGCC 3 cut(s) 57, 555, 782
HapII CCGG 5 cut(s) 36, 42, 68, 323, 601
HhaI GCGC 2 cut(s) 41, 121
Hin1I GRCGYC 1 cut(s) 39
Hin1II CATG 5 cut(s) 172, 278, 295, 593, 872
Hin6I GCGC 2 cut(s) 39, 119
HinP1I GCGC 2 cut(s) 39, 119
HindIII AAGCTT 3 cut(s) 411, 579, 815
HinfI GANTC 3 cut(s) 71, 86, 418
HpaII CCGG 5 cut(s) 36, 42, 68, 323, 601
HphI GGTGA 1 cut(s) 798
Hpy166II GTNNAC 3 cut(s) 103, 204, 385
Hpy188I TCNGA 2 cut(s) 94, 456
Hpy188III TCNNGA 4 cut(s) 83, 283, 524, 746
Hpy8I GTNNAC 3 cut(s) 103, 204, 385
HpyAV CCTTC 4 cut(s) 457, 463, 496, 677
HpyCH4III ACNGT 3 cut(s) 208, 742, 928
HpyCH4IV ACGT 1 cut(s) 424
HpyCH4V TGCA 4 cut(s) 787, 821, 827, 901
HpyF10VI GCNNNNNNNGC 3 cut(s) 47, 73, 301
HpySE526I ACGT 1 cut(s) 424
Hsp92I GRCGYC 1 cut(s) 39
Hsp92II CATG 5 cut(s) 172, 278, 295, 593, 872
HspAI GCGC 2 cut(s) 39, 119
KasI GGCGCC 1 cut(s) 38
KpnI GGTACC 1 cut(s) 346
KroI GCCGGC 1 cut(s) 35
KroNI GCCGGC 1 cut(s) 37
Kzo9I GATC 3 cut(s) 271, 445, 585
LguI GCTCTTC 1 cut(s) 139
LmnI GCTCC 1 cut(s) 47
Lsp1109I GCAGC 1 cut(s) 409
LweI GCATC 6 cut(s) 120, 168, 361, 472, 504, 835
MaeI CTAG 2 cut(s) 761, 937
MaeII ACGT 1 cut(s) 424
MaeIII GTNAC 1 cut(s) 804
MalI GATC 3 cut(s) 273, 447, 587
MbiI CCGCTC 1 cut(s) 149
MboI GATC 3 cut(s) 271, 445, 585
MboII GAAGA 8 cut(s) 139, 156, 330, 646, 664, 688, 849, 875
MfeI CAATTG 1 cut(s) 822
MflI RGATCY 1 cut(s) 445
MluCI AATT 3 cut(s) 450, 625, 822
Mly113I GGCGCC 1 cut(s) 39
MmeI TCCRAC 1 cut(s) 900
MreI CGCCGGCG 1 cut(s) 35
MroNI GCCGGC 1 cut(s) 35
MseI TTAA 6 cut(s) 306, 390, 561, 596, 663, 881
MspCI CTTAAG 1 cut(s) 305
MspI CCGG 5 cut(s) 36, 42, 68, 323, 601
MspR9I CCNGG 1 cut(s) 357
MunI CAATTG 1 cut(s) 822
MvaI CCWGG 1 cut(s) 357
MvnI CGCG 1 cut(s) 119
MwoI GCNNNNNNNGC 3 cut(s) 47, 73, 301
NaeI GCCGGC 1 cut(s) 37
NarI GGCGCC 1 cut(s) 39
NcoI CCATGG 1 cut(s) 589
NdeII GATC 3 cut(s) 271, 445, 585
NgoMIV GCCGGC 1 cut(s) 35
NlaIII CATG 5 cut(s) 172, 278, 295, 593, 872
NlaIV GGNNCC 4 cut(s) 40, 156, 344, 447
NmeAIII GCCGAG 1 cut(s) 511
NmuCI GTSAC 1 cut(s) 804
NspI RCATGY 2 cut(s) 295, 872
PaeR7I CTCGAG 1 cut(s) 644
PciI ACATGT 1 cut(s) 868
PciSI GCTCTTC 1 cut(s) 139
PcsI WCGNNNNNNNCGW 2 cut(s) 90, 267
PdiI GCCGGC 1 cut(s) 37
PfeI GAWTC 3 cut(s) 71, 86, 418
PfoI TCCNGGA 1 cut(s) 355
PkrI GCNGC 2 cut(s) 237, 399
PluTI GGCGCC 1 cut(s) 42
PscI ACATGT 1 cut(s) 868
PshBI ATTAAT 1 cut(s) 390
Psp6I CCWGG 1 cut(s) 355
PspFI CCCAGC 1 cut(s) 181
PspGI CCWGG 1 cut(s) 355
PspN4I GGNNCC 4 cut(s) 40, 156, 344, 447
PspPI GGNCC 2 cut(s) 55, 553
PspXI VCTCGAGB 1 cut(s) 644
PsuI RGATCY 1 cut(s) 445
RsaI GTAC 3 cut(s) 203, 247, 344
RsaNI GTAC 3 cut(s) 202, 246, 343
SapI GCTCTTC 1 cut(s) 139
SaqAI TTAA 6 cut(s) 306, 390, 561, 596, 663, 881
SatI GCNGC 2 cut(s) 236, 398
Sau3AI GATC 3 cut(s) 271, 445, 585
Sau96I GGNCC 2 cut(s) 55, 553
ScrFI CCNGG 1 cut(s) 357
SfaNI GCATC 6 cut(s) 120, 168, 361, 472, 504, 835
SfcI CTRYAG 2 cut(s) 20, 615
SfoI GGCGCC 1 cut(s) 40
Sfr274I CTCGAG 1 cut(s) 644
SgrAI CRCCGGYG 1 cut(s) 35
SlaI CTCGAG 1 cut(s) 644
SmlI CTYRAG 4 cut(s) 134, 305, 644, 701
SmoI CTYRAG 4 cut(s) 134, 305, 644, 701
Sse9I AATT 3 cut(s) 450, 625, 822
SsiI CCGC 4 cut(s) 65, 149, 236, 490
SspDI GGCGCC 1 cut(s) 38
SspMI CTAG 2 cut(s) 761, 937
StyD4I CCNGG 1 cut(s) 355
StyI CCWWGG 2 cut(s) 589, 906
TaaI ACNGT 3 cut(s) 208, 742, 928
TaiI ACGT 1 cut(s) 427
TaqI TCGA 7 cut(s) 84, 211, 261, 270, 297, 645, 921
TaqII GACCGA 1 cut(s) 509
TasI AATT 3 cut(s) 450, 625, 822
TatI WGTACW 1 cut(s) 201
TauI GCSGC 1 cut(s) 238
TfiI GAWTC 3 cut(s) 71, 86, 418
Tru1I TTAA 6 cut(s) 306, 390, 561, 596, 663, 881
Tru9I TTAA 6 cut(s) 306, 390, 561, 596, 663, 881
TscAI CASTG 1 cut(s) 211
TseFI GTSAC 1 cut(s) 804
TseI GCWGC 1 cut(s) 397
Tsp45I GTSAC 1 cut(s) 804
TspDTI ATGAA 2 cut(s) 654, 659
TspGWI ACGGA 1 cut(s) 156
TspRI CASTG 1 cut(s) 211
Vha464I CTTAAG 1 cut(s) 305
VspI ATTAAT 1 cut(s) 390
XceI RCATGY 2 cut(s) 295, 872
XcmI CCANNNNNNNNNTGG 2 cut(s) 353, 547
XhoI CTCGAG 1 cut(s) 644
XmiI GTMKAC 1 cut(s) 102
XspI CTAG 2 cut(s) 761, 937
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.