Rh5DG514100

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0001041
Physical Location & Seq
Reverse (-)
80021951 .. 80023582
1632 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG514100.1

Sequence Viewer

Length: 1122 bp
ATGTCATTTCTGGACGACGATGTCGTTGGCCTAATTGCTAACAAGGTTTGTGAGAAAGATGATAGAAAGTCCTTCTCCGAGGTCTGCAAGCAATGGTGTAGAGTAGAAGGTCTAAGCCGATCATCACTTACGGTCTACCATAACTGGCCCGGTTTGCCCCTTGGTGCACTAACTAGATTCCCAAATGTAGTCGATTTGGAAGTAAAGTATGTTAGGACTGAGGCCGACCTTGAATTCATAGCCCAAACTTGTCCTAGACTCGAGAGCATTACGGTCCACTCCGATATCCGTATAGAGAGTGATGATATTGTTTTGGGGCCAAAAAGTCTAGTTGCTTTGGGGAATGGGTGTCCACAATTGTCCAAAGTTAAGCTTGTGGGGAGGGAAGCAGTAGGGGATTCGGGAGTTGTGGCGCTTGTTCATTCAGCACGTAACTTGAAGGCTCTGGTTTTGGCATGTGATTTGTGGATCTCAGATGAAGCCTTGAGAGCCATTGGGTATGCATCTTCCATTAGCACGTTGAAGTTGCCAGGGTCTCGCATTAAGGATGTGGAATTAGGTGTTTTAGCAAATGGGACATCTTCCATTAGCACTTTGGAGTTGGTAAGGTGTCGCAAGATTACGGATGTGGGATTGGGTTTTTGGGCAAATGGGTCTATCTCGAAAACCCTCAAGAAATTGGTCCTTGATGGCTGCAACAAAATCACTGATACTGGAGTCCAGCTTTTGCGGAAAATGTGTAGCTTGGAGCACCTAGATTTGTCTAACTGTGGGAGTAGAATCACTAATGCTAGAGGTGTGGCAATCTCTGCAATTCAAACCCTCAGGGAATTGCTATTGGTTAATCTTCAGACCGTGTCAAACAGTACCATGGTTGCTCTTGCATGGAACTGCCCCAACTTGGAAATACTTGATTTACGGGGCTGTAAAGCTGTAACAGGAGCTGGCATTCGTGCATTTTCAGCTGATTTGGAAAGCATAGCCCTTGGATGCCTGTCGTTGGAGTCAGAATCTGTTCTGGTGGACAATGTGATTAAAGTGGTGCACGACAACACTCGAAGAGTCGTCAAGTTCATTAGTATATTCACACCGTCCTTCAGATTGAATATTGAGCAGATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

373

Amino Acids

40.52

Weight (kDa)

7.47

Isoelectric Point (pI)

29.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7885 PF25372 157 - 258 8.5e-11 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 20
AccI GTMKAC 1 cut(s) 135
AciI CCGC 1 cut(s) 730
AclWI GGATC 1 cut(s) 476
AcsI RAATTY 1 cut(s) 233
AcuI CTGAAG 2 cut(s) 833, 1081
AfaI GTAC 1 cut(s) 868
AfiI CCNNNNNNNGG 2 cut(s) 901, 1000
AgsI TTSAA 5 cut(s) 233, 439, 523, 818, 1105
AjnI CCWGG 1 cut(s) 529
AluBI AGCT 6 cut(s) 373, 724, 744, 932, 944, 965
AluI AGCT 6 cut(s) 373, 724, 744, 932, 944, 965
Alw21I GWGCWC 3 cut(s) 169, 753, 1047
Alw26I GTCTC 1 cut(s) 540
Alw44I GTGCAC 2 cut(s) 165, 1043
AlwI GGATC 1 cut(s) 476
AlwNI CAGNNNCTG 2 cut(s) 944, 1013
Ama87I CYCGRG 1 cut(s) 260
AoxI GGCC 4 cut(s) 28, 146, 222, 317
ApaLI GTGCAC 2 cut(s) 165, 1043
ApeKI GCWGC 1 cut(s) 693
ApoI RAATTY 1 cut(s) 233
Asp700I GAANNNNTTC 1 cut(s) 1014
AspLEI GCGC 1 cut(s) 415
AspS9I GGNCC 4 cut(s) 147, 274, 317, 682
AsuC2I CCSGG 1 cut(s) 150
AvaI CYCGRG 1 cut(s) 260
AvaII GGWCC 2 cut(s) 274, 682
AxyI CCTNAGG 1 cut(s) 824
BaeGI GKGCMC 2 cut(s) 169, 1047
BaeI ACNNNNGTAYC 2 cut(s) 702, 735
Bbv12I GWGCWC 3 cut(s) 169, 753, 1047
BbvI GCAGC 1 cut(s) 680
BccI CCATC 1 cut(s) 683
BciT130I CCWGG 1 cut(s) 531
BcnI CCSGG 1 cut(s) 150
BcoDI GTCTC 1 cut(s) 540
BfaI CTAG 5 cut(s) 174, 255, 329, 755, 792
BfoI RGCGCY 1 cut(s) 416
BisI GCNGC 1 cut(s) 694
BlsI GCNGC 1 cut(s) 695
Bme1390I CCNGG 2 cut(s) 150, 531
Bme18I GGWCC 2 cut(s) 274, 682
BmeT110I CYCGRG 1 cut(s) 260
BmgT120I GGNCC 4 cut(s) 147, 274, 317, 682
BmiI GGNNCC 1 cut(s) 318
BmrFI CCNGG 2 cut(s) 150, 531
BmsI GCATC 2 cut(s) 512, 980
BpmI CTGGAG 1 cut(s) 735
BpuEI CTTGAG 2 cut(s) 505, 656
BpuMI CCSGG 1 cut(s) 150
BsaAI YACGTR 1 cut(s) 431
BsaI GGTCTC 1 cut(s) 540
BsaJI CCNNGG 5 cut(s) 78, 160, 530, 870, 985
Bsc4I CCNNNNNNNGG 2 cut(s) 901, 1000
Bse1I ACTGG 2 cut(s) 149, 718
Bse21I CCTNAGG 1 cut(s) 824
Bse3DI GCAATG 1 cut(s) 98
BseBI CCWGG 1 cut(s) 531
BseDI CCNNGG 5 cut(s) 78, 160, 530, 870, 985
BseGI GGATG 3 cut(s) 553, 631, 995
BseLI CCNNNNNNNGG 2 cut(s) 901, 1000
BseMI GCAATG 1 cut(s) 98
BseMII CTCAG 3 cut(s) 210, 486, 838
BseNI ACTGG 2 cut(s) 149, 718
BseSI GKGCMC 2 cut(s) 169, 1047
BseXI GCAGC 1 cut(s) 680
BshFI GGCC 4 cut(s) 30, 148, 224, 319
BsiHKAI GWGCWC 3 cut(s) 169, 753, 1047
BsiHKCI CYCGRG 1 cut(s) 260
BsiSI CCGG 1 cut(s) 150
BslFI GGGAC 1 cut(s) 589
BslI CCNNNNNNNGG 2 cut(s) 901, 1000
BsmAI GTCTC 1 cut(s) 540
BsmFI GGGAC 1 cut(s) 589
BsmI GAATGC 1 cut(s) 948
BsnI GGCC 4 cut(s) 30, 148, 224, 319
Bso31I GGTCTC 1 cut(s) 540
BsoBI CYCGRG 1 cut(s) 260
Bsp1286I GDGCHC 3 cut(s) 169, 753, 1047
Bsp143I GATC 2 cut(s) 119, 468
Bsp19I CCATGG 1 cut(s) 870
BspACI CCGC 1 cut(s) 730
BspANI GGCC 4 cut(s) 30, 148, 224, 319
BspCNI CTCAG 3 cut(s) 211, 485, 837
BspLI GGNNCC 1 cut(s) 318
BspPI GGATC 1 cut(s) 476
BspTNI GGTCTC 1 cut(s) 540
BsrDI GCAATG 1 cut(s) 98
BsrI ACTGG 2 cut(s) 149, 718
BssECI CCNNGG 5 cut(s) 78, 160, 530, 870, 985
BssMI GATC 2 cut(s) 119, 468
BssT1I CCWWGG 3 cut(s) 160, 870, 985
Bst2UI CCWGG 1 cut(s) 531
Bst4CI ACNGT 6 cut(s) 133, 274, 770, 856, 866, 1092
Bst6I CTCTTC 1 cut(s) 1054
BstAPI GCANNNNNTGC 1 cut(s) 809
BstBAI YACGTR 1 cut(s) 431
BstC8I GCNNGC 2 cut(s) 89, 946
BstDEI CTNAG 4 cut(s) 113, 219, 472, 824
BstDSI CCRYGG 1 cut(s) 870
BstF5I GGATG 3 cut(s) 553, 631, 995
BstH2I RGCGCY 1 cut(s) 416
BstHHI GCGC 1 cut(s) 415
BstKTI GATC 2 cut(s) 122, 471
BstMAI GTCTC 1 cut(s) 540
BstMBI GATC 2 cut(s) 119, 468
BstMWI GCNNNNNNNGC 4 cut(s) 154, 488, 809, 962
BstNI CCWGG 1 cut(s) 531
BstNSI RCATGY 1 cut(s) 459
BstSCI CCNGG 2 cut(s) 148, 529
BstSLI GKGCMC 2 cut(s) 169, 1047
BstV1I GCAGC 1 cut(s) 680
BstX2I RGATCY 1 cut(s) 468
BstYI RGATCY 1 cut(s) 468
Bsu36I CCTNAGG 1 cut(s) 824
BsuRI GGCC 4 cut(s) 30, 148, 224, 319
BtgI CCRYGG 1 cut(s) 870
BtsCI GGATG 3 cut(s) 553, 631, 995
BtsIMutI CAGTG 1 cut(s) 705
Cac8I GCNNGC 2 cut(s) 89, 946
CaiI CAGNNNCTG 2 cut(s) 944, 1013
CfoI GCGC 1 cut(s) 415
Cfr13I GGNCC 4 cut(s) 147, 274, 317, 682
Csp6I GTAC 1 cut(s) 867
CviAII CATG 3 cut(s) 456, 871, 885
CviQI GTAC 1 cut(s) 867
DdeI CTNAG 4 cut(s) 113, 219, 472, 824
DpnI GATC 2 cut(s) 121, 470
DpnII GATC 2 cut(s) 119, 468
DrdI GACNNNNNNGTC 1 cut(s) 20
DseDI GACNNNNNNGTC 1 cut(s) 20
Eam1104I CTCTTC 1 cut(s) 1054
EarI CTCTTC 1 cut(s) 1054
Eco130I CCWWGG 3 cut(s) 160, 870, 985
Eco31I GGTCTC 1 cut(s) 540
Eco32I GATATC 1 cut(s) 286
Eco47I GGWCC 2 cut(s) 274, 682
Eco57I CTGAAG 2 cut(s) 833, 1081
Eco81I CCTNAGG 1 cut(s) 824
Eco88I CYCGRG 1 cut(s) 260
EcoRI GAATTC 1 cut(s) 233
EcoRII CCWGG 1 cut(s) 529
EcoRV GATATC 1 cut(s) 286
EcoT14I CCWWGG 3 cut(s) 160, 870, 985
EcoT22I ATGCAT 1 cut(s) 505
ErhI CCWWGG 3 cut(s) 160, 870, 985
FaeI CATG 3 cut(s) 459, 874, 888
FalI AAGNNNNNCTT 2 cut(s) 357, 389
FaqI GGGAC 1 cut(s) 589
FatI CATG 3 cut(s) 455, 870, 884
FblI GTMKAC 1 cut(s) 135
Fnu4HI GCNGC 1 cut(s) 694
FokI GGATG 3 cut(s) 560, 638, 1002
Fsp4HI GCNGC 1 cut(s) 694
FspBI CTAG 5 cut(s) 174, 255, 329, 755, 792
GlaI GCGC 1 cut(s) 414
GluI GCNGC 1 cut(s) 694
GsuI CTGGAG 1 cut(s) 735
HaeII RGCGCY 1 cut(s) 416
HaeIII GGCC 4 cut(s) 30, 148, 224, 319
HapII CCGG 1 cut(s) 150
HhaI GCGC 1 cut(s) 415
Hin1II CATG 3 cut(s) 459, 874, 888
Hin6I GCGC 1 cut(s) 413
HinP1I GCGC 1 cut(s) 413
HindIII AAGCTT 1 cut(s) 371
HinfI GANTC 8 cut(s) 177, 258, 398, 717, 780, 1004, 1010, 1062
HpaII CCGG 1 cut(s) 150
Hpy166II GTNNAC 6 cut(s) 136, 167, 277, 353, 1024, 1045
Hpy188I TCNGA 6 cut(s) 79, 283, 475, 852, 1009, 1100
Hpy188III TCNNGA 5 cut(s) 11, 262, 402, 661, 673
Hpy8I GTNNAC 6 cut(s) 136, 167, 277, 353, 1024, 1045
Hpy99I CGWCG 1 cut(s) 20
HpyAV CCTTC 4 cut(s) 82, 101, 433, 1105
HpyCH4III ACNGT 6 cut(s) 133, 274, 770, 856, 866, 1092
HpyCH4IV ACGT 2 cut(s) 430, 518
HpyCH4V TGCA 8 cut(s) 87, 167, 503, 696, 812, 884, 956, 1045
HpyF10VI GCNNNNNNNGC 4 cut(s) 154, 488, 809, 962
HpyF3I CTNAG 4 cut(s) 113, 219, 472, 824
HpySE526I ACGT 2 cut(s) 430, 518
Hsp92II CATG 3 cut(s) 459, 874, 888
HspAI GCGC 1 cut(s) 413
Kzo9I GATC 2 cut(s) 119, 468
LmnI GCTCC 2 cut(s) 748, 941
Lsp1109I GCAGC 1 cut(s) 680
LweI GCATC 2 cut(s) 512, 980
MaeI CTAG 5 cut(s) 174, 255, 329, 755, 792
MaeII ACGT 2 cut(s) 430, 518
MaeIII GTNAC 2 cut(s) 431, 934
MalI GATC 2 cut(s) 121, 470
MboI GATC 2 cut(s) 119, 468
MboII GAAGA 4 cut(s) 498, 573, 839, 1071
MfeI CAATTG 1 cut(s) 356
MflI RGATCY 1 cut(s) 468
MhlI GDGCHC 3 cut(s) 169, 753, 1047
MluCI AATT 7 cut(s) 33, 233, 356, 554, 677, 813, 830
MlyI GAGTC 4 cut(s) 252, 726, 1013, 1071
MmeI TCCRAC 1 cut(s) 981
MnlI CCTC 6 cut(s) 73, 214, 375, 680, 788, 833
Mph1103I ATGCAT 1 cut(s) 505
MroXI GAANNNNTTC 1 cut(s) 1014
MseI TTAA 4 cut(s) 369, 543, 843, 1035
MspA1I CMGCKG 1 cut(s) 965
MspI CCGG 1 cut(s) 150
MspR9I CCNGG 2 cut(s) 150, 531
MunI CAATTG 1 cut(s) 356
Mva1269I GAATGC 1 cut(s) 948
MvaI CCWGG 1 cut(s) 531
MwoI GCNNNNNNNGC 4 cut(s) 154, 488, 809, 962
NciI CCSGG 1 cut(s) 150
NcoI CCATGG 1 cut(s) 870
NdeII GATC 2 cut(s) 119, 468
NlaIII CATG 3 cut(s) 459, 874, 888
NlaIV GGNNCC 1 cut(s) 318
NsiI ATGCAT 1 cut(s) 505
NspI RCATGY 1 cut(s) 459
PaeR7I CTCGAG 1 cut(s) 260
PcsI WCGNNNNNNNCGW 1 cut(s) 21
PctI GAATGC 1 cut(s) 948
PdmI GAANNNNTTC 1 cut(s) 1014
PfeI GAWTC 4 cut(s) 177, 398, 780, 1010
PflFI GACNNNGTC 2 cut(s) 20, 856
PkrI GCNGC 1 cut(s) 695
PleI GAGTC 4 cut(s) 252, 725, 1012, 1070
PpsI GAGTC 4 cut(s) 252, 725, 1012, 1070
Ppu21I YACGTR 1 cut(s) 431
Psp6I CCWGG 1 cut(s) 529
PspGI CCWGG 1 cut(s) 529
PspN4I GGNNCC 1 cut(s) 318
PspPI GGNCC 4 cut(s) 147, 274, 317, 682
PstNI CAGNNNCTG 2 cut(s) 944, 1013
PsuI RGATCY 1 cut(s) 468
PsyI GACNNNGTC 2 cut(s) 20, 856
PvuII CAGCTG 1 cut(s) 965
RsaI GTAC 1 cut(s) 868
RsaNI GTAC 1 cut(s) 867
SaqAI TTAA 4 cut(s) 369, 543, 843, 1035
SatI GCNGC 1 cut(s) 694
Sau3AI GATC 2 cut(s) 119, 468
Sau96I GGNCC 4 cut(s) 147, 274, 317, 682
SchI GAGTC 4 cut(s) 252, 726, 1013, 1071
ScrFI CCNGG 2 cut(s) 150, 531
SduI GDGCHC 3 cut(s) 169, 753, 1047
SfaNI GCATC 2 cut(s) 512, 980
Sfr274I CTCGAG 1 cut(s) 260
SinI GGWCC 2 cut(s) 274, 682
SlaI CTCGAG 1 cut(s) 260
SmlI CTYRAG 3 cut(s) 260, 484, 671
SmoI CTYRAG 3 cut(s) 260, 484, 671
Sse9I AATT 7 cut(s) 33, 233, 356, 554, 677, 813, 830
SsiI CCGC 1 cut(s) 730
SspI AATATT 1 cut(s) 1108
SspMI CTAG 5 cut(s) 174, 255, 329, 755, 792
StyD4I CCNGG 2 cut(s) 148, 529
StyI CCWWGG 3 cut(s) 160, 870, 985
TaaI ACNGT 6 cut(s) 133, 274, 770, 856, 866, 1092
TaiI ACGT 2 cut(s) 433, 521
TaqI TCGA 4 cut(s) 192, 261, 662, 1057
TasI AATT 7 cut(s) 33, 233, 356, 554, 677, 813, 830
TfiI GAWTC 4 cut(s) 177, 398, 780, 1010
Tru1I TTAA 4 cut(s) 369, 543, 843, 1035
Tru9I TTAA 4 cut(s) 369, 543, 843, 1035
TscAI CASTG 1 cut(s) 712
TseI GCWGC 1 cut(s) 693
TspDTI ATGAA 4 cut(s) 226, 410, 492, 1063
TspGWI ACGGA 2 cut(s) 278, 638
TspRI CASTG 1 cut(s) 712
Tth111I GACNNNGTC 2 cut(s) 20, 856
VneI GTGCAC 2 cut(s) 165, 1043
VpaK11BI GGWCC 2 cut(s) 274, 682
XapI RAATTY 1 cut(s) 233
XceI RCATGY 1 cut(s) 459
XcmI CCANNNNNNNNNTGG 1 cut(s) 592
XhoI CTCGAG 1 cut(s) 260
XmiI GTMKAC 1 cut(s) 135
XmnI GAANNNNTTC 1 cut(s) 1014
XspI CTAG 5 cut(s) 174, 255, 329, 755, 792
Zsp2I ATGCAT 1 cut(s) 505
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.