Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001041

Physical Location & Seq

Genomic Coordinates Reverse (-)

51550271 .. 51551421

Gene Structure 1151 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019401

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGGTGTACACACCAAAAAGAAATCTGGGATATTTTCATCGTTGAGCGGCGATTTACTTGGCCCAGTCATTAATAAGGTCAAGGACAAAGAAGATAGAAACTTGTTTTCCGAGGTCTGCAAGCAATGGTTTAAAGTGGAAGGTCTAGACCGGTCATCACTTTCCCTTGATGTTAACAAGCCCAGATTTTCCCTTCCTGAACTAACTAGATTCCCCAATATAGTCAATTTGACATTATGGGATTTCAAGACCCATACCGACCTCGAATTCATAGCCAAAACATGTCCTAAAATCGAGAGCATCATGATTGAATGCAGAGATGGGAAGCCAAAAGGTGATGGTGGTATTTTAAGCAGAAAAGGTCTGTGTGCTTTGGGAGATGGGTGTCCCAAATTGTCCGAAGTTGAAATTATTGGGCCAAATGCAATAGGGGATTCTGGAGTTGATCAGCTTTTACATTCAGCGCATAACTTGGAGGCCCTGGTTTTGCTAAAGAATAGCTTGATATGGGTGAATGGATCTACCTCAAAAACCCTTAAGAAATTGGTCCCTTATACTTTCCCTAAAATCACTAATACTGGGGTCGAGCTTTTGGGCAAAATGTGTAACTTGGAGCACCTGGAATTGTCCTCTGGGGGAGAAATGAGTCAAATCACTGATATTGTGGCAATCTCTGCAATTCGAACCCTCAAGGAATTGAGATTGAATCATCTAAACGTGTCAGACCGTACCATGGTCGCTCTTGCACAAAATTGCCGCAACTTGGAAATACTTGATTTAGGGGGTTGTGAAAGGGTAACTGGAGCTGGCATTTGTGCATTTTGTGGTCATAAGTGCTTGAAATGCCTTGAATTGCACGAGTTAAATATCAATCTGTCTGATGTGGAACGGATAATGCTTGGATACCCTTCATTGGATTATGTTGTCGTGGTTTCACGTAGGAGGCTTGATCCAACTTGGAGCGATCAATTGATGCACGACAAAACTGGAAGAGTTGTTAAGTATGTTGTAAGTTATGCTCTTGATATGTATTTGCAGGACTTTTATGTTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_6

Protein Analysis

352

Amino Acids

39.02

Weight (kDa)

7.53

Isoelectric Point (pI)

36.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box_5	PF18511	17 - 52	3.5e-07	F-box
DUF7885	PF25372	121 - 275	2e-07	Leucine Rich Repeat Domain of unknown function (DUF7885)
DUF7885	PF25372	176 - 290	1.5e-06	Leucine Rich Repeat Domain of unknown function (DUF7885)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001041)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40700 FvH4_5g10370 FvH4_5g12160 FvH4_5g12180 FvH4_5g12190 FvH4_5g12200 FvH4_5g12210 FvH4_5g12211
rosa_chinensis	RchiOBHm_Chr5g0073461 RchiOBHm_Chr5g0073471 RchiOBHm_Chr7g0185341 RchiOBHm_Chr7g0185381 RchiOBHm_Chr7g0185401
rosa_laevigata	RLG00000004916 RLG00000004917 RLG00000004921 RLG00000019401 RLG00000036387
rosa_multiflora	Rmu_co8366929.1_g000001 Rmu_co8392105.1_g000001 Rmu_sc0001761.1_g000011 Rmu_sc0001761.1_g000012 Rmu_sc0001761.1_g000013 Rmu_sc0001761.1_g000016 Rmu_sc0004670.1_g000010 Rmu_sc0008496.1_g000005 Rmu_sc0023242.1_g000005 Rmu_sc0023242.1_g000006 Rmu_ssc0000226.1_g000026 Rmu_ssc0000226.1_g000027
rosa_roxburghii	Rroxscaffold_1G00007790 Rroxscaffold_1G00017220 Rroxscaffold_2G00110040 Rroxscaffold_3G00269000 Rroxscaffold_3G00269010
rosa_rugosa	Rorug05G0423700 Rorug06G0468100 Rorug06G0468700
rosa_samantha	Rh2CG354600 Rh2CG354700 Rh2DG393800 Rh5AG481000 Rh5CG455400 Rh5CG524900 Rh5DG514100 Rh7AG074000 Rh7AG074100 Rh7AG074200 Rh7AG074600 Rh7BG072600 Rh7BG073200 Rh7BG073300 Rh7BG073400 Rh7DG073200 Rh7DG073600 Rh7DG073700 Rh7DG073800
rosa_wichuraiana	Rw2G030200 Rw7G006080 Rw7G006120 Rw7G006130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	48
AciI	CCGC	2 cut(s)	48, 757
AclWI	GGATC	2 cut(s)	526, 944
AcsI	RAATTY	1 cut(s)	266
AfaI	GTAC	2 cut(s)	9, 730
AfiI	CCNNNNNNNGG	3 cut(s)	733, 763, 913
AflII	CTTAAG	1 cut(s)	536
AflIII	ACRYGT	2 cut(s)	281, 717
AgeI	ACCGGT	1 cut(s)	150
AgsI	TTSAA	6 cut(s)	247, 311, 407, 706, 841, 851
AjnI	CCWGG	2 cut(s)	480, 618
AluBI	AGCT	4 cut(s)	451, 501, 589, 806
AluI	AGCT	4 cut(s)	451, 501, 589, 806
Alw21I	GWGCWC	1 cut(s)	618
AlwI	GGATC	2 cut(s)	526, 944
AoxI	GGCC	3 cut(s)	61, 416, 477
ApoI	RAATTY	1 cut(s)	266
AseI	ATTAAT	1 cut(s)	72
AsiGI	ACCGGT	1 cut(s)	150
AspLEI	GCGC	1 cut(s)	466
AspS9I	GGNCC	4 cut(s)	62, 416, 478, 547
AsuHPI	GGTGA	2 cut(s)	347, 523
AsuII	TTCGAA	1 cut(s)	682
AvaII	GGWCC	1 cut(s)	547
BauI	CACGAG	1 cut(s)	857
Bbv12I	GWGCWC	1 cut(s)	618
BccI	CCATC	3 cut(s)	314, 332, 374
BciT130I	CCWGG	2 cut(s)	482, 620
BciVI	GTATCC	1 cut(s)	896
BclI	TGATCA	1 cut(s)	445
BfaI	CTAG	2 cut(s)	146, 207
BfrI	CTTAAG	1 cut(s)	536
BfuI	GTATCC	1 cut(s)	896
BisI	GCNGC	2 cut(s)	49, 757
BlsI	GCNGC	2 cut(s)	50, 758
Bme1390I	CCNGG	2 cut(s)	482, 620
Bme18I	GGWCC	1 cut(s)	547
BmgT120I	GGNCC	4 cut(s)	62, 416, 478, 547
BmiI	GGNNCC	1 cut(s)	549
BmrFI	CCNGG	2 cut(s)	482, 620
BmrI	ACTGGG	2 cut(s)	59, 588
BmsI	GCATC	2 cut(s)	309, 963
BmuI	ACTGGG	2 cut(s)	59, 588
BpmI	CTGGAG	2 cut(s)	459, 822
Bpu14I	TTCGAA	1 cut(s)	682
BpuEI	CTTGAG	1 cut(s)	674
BsaAI	YACGTR	1 cut(s)	938
BsaJI	CCNNGG	3 cut(s)	111, 480, 732
BsaWI	WCCGGW	1 cut(s)	150
Bsc4I	CCNNNNNNNGG	3 cut(s)	733, 763, 913
Bse118I	RCCGGY	1 cut(s)	150
Bse1I	ACTGG	4 cut(s)	65, 583, 805, 991
Bse3DI	GCAATG	1 cut(s)	131
BseBI	CCWGG	2 cut(s)	482, 620
BseDI	CCNNGG	3 cut(s)	111, 480, 732
BseLI	CCNNNNNNNGG	3 cut(s)	733, 763, 913
BseMI	GCAATG	1 cut(s)	131
BseNI	ACTGG	4 cut(s)	65, 583, 805, 991
BshFI	GGCC	3 cut(s)	63, 418, 479
BshTI	ACCGGT	1 cut(s)	150
BsiHKAI	GWGCWC	1 cut(s)	618
BsiSI	CCGG	1 cut(s)	151
BslFI	GGGAC	2 cut(s)	372, 533
BslI	CCNNNNNNNGG	3 cut(s)	733, 763, 913
BsmFI	GGGAC	2 cut(s)	372, 533
BsmI	GAATGC	1 cut(s)	317
BsnI	GGCC	3 cut(s)	63, 418, 479
Bsp119I	TTCGAA	1 cut(s)	682
Bsp1286I	GDGCHC	1 cut(s)	618
Bsp1407I	TGTACA	1 cut(s)	7
Bsp143I	GATC	4 cut(s)	445, 518, 949, 964
Bsp19I	CCATGG	1 cut(s)	732
BspACI	CCGC	2 cut(s)	48, 757
BspANI	GGCC	3 cut(s)	63, 418, 479
BspHI	TCATGA	1 cut(s)	303
BspLI	GGNNCC	1 cut(s)	549
BspPI	GGATC	2 cut(s)	526, 944
BspT104I	TTCGAA	1 cut(s)	682
BspTI	CTTAAG	1 cut(s)	536
BsrBI	CCGCTC	1 cut(s)	48
BsrDI	GCAATG	1 cut(s)	131
BsrFI	RCCGGY	1 cut(s)	150
BsrGI	TGTACA	1 cut(s)	7
BsrI	ACTGG	4 cut(s)	65, 583, 805, 991
BssAI	RCCGGY	1 cut(s)	150
BssECI	CCNNGG	3 cut(s)	111, 480, 732
BssMI	GATC	4 cut(s)	445, 518, 949, 964
BssSI	CACGAG	1 cut(s)	857
BssT1I	CCWWGG	1 cut(s)	732
Bst2BI	CACGAG	1 cut(s)	857
Bst2UI	CCWGG	2 cut(s)	482, 620
Bst4CI	ACNGT	1 cut(s)	728
Bst6I	CTCTTC	1 cut(s)	985
BstAFI	CTTAAG	1 cut(s)	536
BstAPI	GCANNNNNTGC	1 cut(s)	674
BstAUI	TGTACA	1 cut(s)	7
BstBAI	YACGTR	1 cut(s)	938
BstBI	TTCGAA	1 cut(s)	682
BstC8I	GCNNGC	2 cut(s)	122, 808
BstDSI	CCRYGG	1 cut(s)	732
BstHHI	GCGC	1 cut(s)	466
BstKTI	GATC	4 cut(s)	448, 521, 952, 967
BstMBI	GATC	4 cut(s)	445, 518, 949, 964
BstMWI	GCNNNNNNNGC	2 cut(s)	674, 843
BstNI	CCWGG	2 cut(s)	482, 620
BstNSI	RCATGY	1 cut(s)	285
BstSCI	CCNGG	2 cut(s)	480, 618
BstX2I	RGATCY	1 cut(s)	518
BstYI	RGATCY	1 cut(s)	518
BsuI	GTATCC	1 cut(s)	896
BsuRI	GGCC	3 cut(s)	63, 418, 479
BtgI	CCRYGG	1 cut(s)	732
BtsIMutI	CAGTG	1 cut(s)	654
Cac8I	GCNNGC	2 cut(s)	122, 808
CciI	TCATGA	1 cut(s)	303
CfoI	GCGC	1 cut(s)	466
Cfr10I	RCCGGY	1 cut(s)	150
Cfr13I	GGNCC	4 cut(s)	62, 416, 478, 547
Csp6I	GTAC	2 cut(s)	8, 729
CspAI	ACCGGT	1 cut(s)	150
CviAII	CATG	3 cut(s)	282, 304, 733
CviQI	GTAC	2 cut(s)	8, 729
DpnI	GATC	4 cut(s)	447, 520, 951, 966
DpnII	GATC	4 cut(s)	445, 518, 949, 964
DraI	TTTAAA	1 cut(s)	133
Eam1104I	CTCTTC	1 cut(s)	985
EarI	CTCTTC	1 cut(s)	985
Eco130I	CCWWGG	1 cut(s)	732
Eco47I	GGWCC	1 cut(s)	547
EcoO109I	RGGNCCY	1 cut(s)	478
EcoRI	GAATTC	1 cut(s)	266
EcoRII	CCWGG	2 cut(s)	480, 618
EcoT14I	CCWWGG	1 cut(s)	732
ErhI	CCWWGG	1 cut(s)	732
FaeI	CATG	3 cut(s)	285, 307, 736
FalI	AAGNNNNNCTT	2 cut(s)	485, 517
FaqI	GGGAC	2 cut(s)	372, 533
FatI	CATG	3 cut(s)	281, 303, 732
FbaI	TGATCA	1 cut(s)	445
Fnu4HI	GCNGC	2 cut(s)	49, 757
Fsp4HI	GCNGC	2 cut(s)	49, 757
FspBI	CTAG	2 cut(s)	146, 207
GlaI	GCGC	1 cut(s)	465
GluI	GCNGC	2 cut(s)	49, 757
GsuI	CTGGAG	2 cut(s)	459, 822
HaeIII	GGCC	3 cut(s)	63, 418, 479
HapII	CCGG	1 cut(s)	151
HhaI	GCGC	1 cut(s)	466
Hin1II	CATG	3 cut(s)	285, 307, 736
Hin6I	GCGC	1 cut(s)	464
HinP1I	GCGC	1 cut(s)	464
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HinfI	GANTC	4 cut(s)	210, 434, 646, 706
HpaI	GTTAAC	1 cut(s)	175
HpaII	CCGG	1 cut(s)	151
HphI	GGTGA	2 cut(s)	347, 523
Hpy166II	GTNNAC	3 cut(s)	8, 10, 175
Hpy188I	TCNGA	4 cut(s)	112, 400, 724, 880
Hpy188III	TCNNGA	7 cut(s)	146, 197, 247, 295, 304, 438, 1022
Hpy8I	GTNNAC	3 cut(s)	8, 10, 175
HpyAV	CCTTC	3 cut(s)	134, 203, 918
HpyCH4III	ACNGT	1 cut(s)	728
HpyCH4IV	ACGT	2 cut(s)	717, 937
HpyCH4V	TGCA	9 cut(s)	120, 315, 425, 677, 746, 818, 856, 976, 1036
HpyF10VI	GCNNNNNNNGC	2 cut(s)	674, 843
HpySE526I	ACGT	2 cut(s)	717, 937
Hsp92II	CATG	3 cut(s)	285, 307, 736
HspAI	GCGC	1 cut(s)	464
Ksp22I	TGATCA	1 cut(s)	445
KspAI	GTTAAC	1 cut(s)	175
Kzo9I	GATC	4 cut(s)	445, 518, 949, 964
LmnI	GCTCC	3 cut(s)	613, 803, 960
LweI	GCATC	2 cut(s)	309, 963
MaeI	CTAG	2 cut(s)	146, 207
MaeII	ACGT	2 cut(s)	717, 937
MaeIII	GTNAC	2 cut(s)	605, 796
MalI	GATC	4 cut(s)	447, 520, 951, 966
MbiI	CCGCTC	1 cut(s)	48
MboI	GATC	4 cut(s)	445, 518, 949, 964
MboII	GAAGA	2 cut(s)	104, 1002
MfeI	CAATTG	1 cut(s)	968
MflI	RGATCY	1 cut(s)	518
MhlI	GDGCHC	1 cut(s)	618
MlyI	GAGTC	1 cut(s)	655
MmeI	TCCRAC	1 cut(s)	977
MnlI	CCTC	7 cut(s)	106, 272, 469, 535, 640, 698, 936
MseI	TTAA	7 cut(s)	72, 132, 174, 350, 537, 863, 999
MspCI	CTTAAG	1 cut(s)	536
MspI	CCGG	1 cut(s)	151
MspR9I	CCNGG	2 cut(s)	482, 620
MunI	CAATTG	1 cut(s)	968
Mva1269I	GAATGC	1 cut(s)	317
MvaI	CCWGG	2 cut(s)	482, 620
MwoI	GCNNNNNNNGC	2 cut(s)	674, 843
NcoI	CCATGG	1 cut(s)	732
NdeII	GATC	4 cut(s)	445, 518, 949, 964
NlaIII	CATG	3 cut(s)	285, 307, 736
NlaIV	GGNNCC	1 cut(s)	549
NspI	RCATGY	1 cut(s)	285
NspV	TTCGAA	1 cut(s)	682
PagI	TCATGA	1 cut(s)	303
PciI	ACATGT	1 cut(s)	281
PctI	GAATGC	1 cut(s)	317
PfeI	GAWTC	3 cut(s)	210, 434, 706
PinAI	ACCGGT	1 cut(s)	150
PkrI	GCNGC	2 cut(s)	50, 758
PleI	GAGTC	1 cut(s)	654
PpsI	GAGTC	1 cut(s)	654
Ppu21I	YACGTR	1 cut(s)	938
PscI	ACATGT	1 cut(s)	281
PshBI	ATTAAT	1 cut(s)	72
Psp6I	CCWGG	2 cut(s)	480, 618
PspGI	CCWGG	2 cut(s)	480, 618
PspN4I	GGNNCC	1 cut(s)	549
PspPI	GGNCC	4 cut(s)	62, 416, 478, 547
PsuI	RGATCY	1 cut(s)	518
RsaI	GTAC	2 cut(s)	9, 730
RsaNI	GTAC	2 cut(s)	8, 729
SaqAI	TTAA	7 cut(s)	72, 132, 174, 350, 537, 863, 999
SatI	GCNGC	2 cut(s)	49, 757
Sau3AI	GATC	4 cut(s)	445, 518, 949, 964
Sau96I	GGNCC	4 cut(s)	62, 416, 478, 547
SchI	GAGTC	1 cut(s)	655
ScrFI	CCNGG	2 cut(s)	482, 620
SduI	GDGCHC	1 cut(s)	618
SfaNI	GCATC	2 cut(s)	309, 963
SfuI	TTCGAA	1 cut(s)	682
SinI	GGWCC	1 cut(s)	547
SmlI	CTYRAG	2 cut(s)	536, 689
SmoI	CTYRAG	2 cut(s)	536, 689
SsiI	CCGC	2 cut(s)	48, 757
SspMI	CTAG	2 cut(s)	146, 207
StyD4I	CCNGG	2 cut(s)	480, 618
StyI	CCWWGG	1 cut(s)	732
TaaI	ACNGT	1 cut(s)	728
TaiI	ACGT	2 cut(s)	720, 940
TaqI	TCGA	4 cut(s)	264, 294, 585, 682
TatI	WGTACW	1 cut(s)	7
TauI	GCSGC	2 cut(s)	51, 759
TfiI	GAWTC	3 cut(s)	210, 434, 706
Tru1I	TTAA	7 cut(s)	72, 132, 174, 350, 537, 863, 999
Tru9I	TTAA	7 cut(s)	72, 132, 174, 350, 537, 863, 999
TscAI	CASTG	1 cut(s)	661
TspDTI	ATGAA	3 cut(s)	27, 259, 900
TspGWI	ACGGA	1 cut(s)	904
TspRI	CASTG	1 cut(s)	661
Vha464I	CTTAAG	1 cut(s)	536
VpaK11BI	GGWCC	1 cut(s)	547
VspI	ATTAAT	1 cut(s)	72
XapI	RAATTY	1 cut(s)	266
XbaI	TCTAGA	1 cut(s)	145
XceI	RCATGY	1 cut(s)	285
XspI	CTAG	2 cut(s)	146, 207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.