RchiOBHm_Chr7g0185381

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0001041
Physical Location & Seq
Reverse (-)
5511915 .. 5512301
387 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16543

Sequence Viewer

Length: 231 bp
ATGTGTAGCTTGGAGCACCTGAAATTGTCTTATGAGGGAGAAGTCAGTCAAATCACTGATATTGGAGGTGTGGGAATTTCTGCAATTCGAACCCTCAGGGAATTGATATTGAATTATGTGAACCTGTCGGACCCTACCATGGCCGCTCTTGCACAGAATTGCCGCAACTTGGAAATGCTTGATTTAGGGGGTTGTGAAAGGGTAACCGGAGCTGGCATTCGTGCGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

76

Amino Acids

8.21

Weight (kDa)

4.87

Isoelectric Point (pI)

11.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 146
AciI CCGC 2 cut(s) 144, 163
AcoI YGGCCR 1 cut(s) 141
AcsI RAATTY 1 cut(s) 75
AfiI CCNNNNNNNGG 2 cut(s) 139, 169
AgsI TTSAA 1 cut(s) 112
AluBI AGCT 2 cut(s) 9, 212
AluI AGCT 2 cut(s) 9, 212
Alw21I GWGCWC 1 cut(s) 18
AoxI GGCC 1 cut(s) 141
ApoI RAATTY 1 cut(s) 75
AspS9I GGNCC 1 cut(s) 130
AsuII TTCGAA 1 cut(s) 88
AvaII GGWCC 1 cut(s) 130
AxyI CCTNAGG 1 cut(s) 95
Bbv12I GWGCWC 1 cut(s) 18
BisI GCNGC 2 cut(s) 144, 163
BlsI GCNGC 2 cut(s) 145, 164
Bme18I GGWCC 1 cut(s) 130
BmgT120I GGNCC 1 cut(s) 130
BmiI GGNNCC 1 cut(s) 132
Bpu14I TTCGAA 1 cut(s) 88
BsaJI CCNNGG 1 cut(s) 138
BsaWI WCCGGW 1 cut(s) 206
Bsc4I CCNNNNNNNGG 2 cut(s) 139, 169
Bse21I CCTNAGG 1 cut(s) 95
BseDI CCNNGG 1 cut(s) 138
BseLI CCNNNNNNNGG 2 cut(s) 139, 169
BseMII CTCAG 1 cut(s) 109
BshFI GGCC 1 cut(s) 143
BsiHKAI GWGCWC 1 cut(s) 18
BsiSI CCGG 1 cut(s) 207
BslI CCNNNNNNNGG 2 cut(s) 139, 169
BsmI GAATGC 1 cut(s) 216
BsnI GGCC 1 cut(s) 143
Bsp119I TTCGAA 1 cut(s) 88
Bsp1286I GDGCHC 1 cut(s) 18
Bsp19I CCATGG 1 cut(s) 138
BspACI CCGC 2 cut(s) 144, 163
BspANI GGCC 1 cut(s) 143
BspCNI CTCAG 1 cut(s) 108
BspLI GGNNCC 1 cut(s) 132
BspT104I TTCGAA 1 cut(s) 88
BsrBI CCGCTC 1 cut(s) 146
BssECI CCNNGG 1 cut(s) 138
BssT1I CCWWGG 1 cut(s) 138
BstBI TTCGAA 1 cut(s) 88
BstC8I GCNNGC 1 cut(s) 214
BstDEI CTNAG 1 cut(s) 95
BstDSI CCRYGG 1 cut(s) 138
BstEII GGTNACC 1 cut(s) 202
BstMWI GCNNNNNNNGC 1 cut(s) 149
BstPI GGTNACC 1 cut(s) 202
Bsu36I CCTNAGG 1 cut(s) 95
BsuRI GGCC 1 cut(s) 143
BtgI CCRYGG 1 cut(s) 138
BtsIMutI CAGTG 1 cut(s) 54
Cac8I GCNNGC 1 cut(s) 214
Cfr13I GGNCC 1 cut(s) 130
CviAII CATG 1 cut(s) 139
CviJI RGCY 3 cut(s) 9, 143, 212
CviKI_1 RGCY 3 cut(s) 9, 143, 212
DdeI CTNAG 1 cut(s) 95
EaeI YGGCCR 1 cut(s) 141
Eco130I CCWWGG 1 cut(s) 138
Eco47I GGWCC 1 cut(s) 130
Eco81I CCTNAGG 1 cut(s) 95
Eco91I GGTNACC 1 cut(s) 202
EcoO65I GGTNACC 1 cut(s) 202
EcoT14I CCWWGG 1 cut(s) 138
ErhI CCWWGG 1 cut(s) 138
FaeI CATG 1 cut(s) 142
FaiI YATR 3 cut(s) 33, 117, 140
FatI CATG 1 cut(s) 138
Fnu4HI GCNGC 2 cut(s) 144, 163
Fsp4HI GCNGC 2 cut(s) 144, 163
GluI GCNGC 2 cut(s) 144, 163
HaeIII GGCC 1 cut(s) 143
HapII CCGG 1 cut(s) 207
Hin1II CATG 1 cut(s) 142
HpaII CCGG 1 cut(s) 207
Hpy166II GTNNAC 1 cut(s) 121
Hpy188I TCNGA 1 cut(s) 130
Hpy8I GTNNAC 1 cut(s) 121
HpyCH4V TGCA 2 cut(s) 83, 152
HpyF10VI GCNNNNNNNGC 1 cut(s) 149
HpyF3I CTNAG 1 cut(s) 95
Hsp92II CATG 1 cut(s) 142
LmnI GCTCC 2 cut(s) 13, 209
LpnPI CCDG 5 cut(s) 32, 82, 137, 198, 220
MaeIII GTNAC 1 cut(s) 202
MbiI CCGCTC 1 cut(s) 146
MhlI GDGCHC 1 cut(s) 18
MluCI AATT 6 cut(s) 23, 75, 84, 101, 112, 157
MmeI TCCRAC 1 cut(s) 108
MnlI CCTC 3 cut(s) 28, 59, 104
MspI CCGG 1 cut(s) 207
Mva1269I GAATGC 1 cut(s) 216
MwoI GCNNNNNNNGC 1 cut(s) 149
NcoI CCATGG 1 cut(s) 138
NlaIII CATG 1 cut(s) 142
NlaIV GGNNCC 1 cut(s) 132
NspV TTCGAA 1 cut(s) 88
PctI GAATGC 1 cut(s) 216
PkrI GCNGC 2 cut(s) 145, 164
PspEI GGTNACC 1 cut(s) 202
PspN4I GGNNCC 1 cut(s) 132
PspPI GGNCC 1 cut(s) 130
SatI GCNGC 2 cut(s) 144, 163
Sau96I GGNCC 1 cut(s) 130
SduI GDGCHC 1 cut(s) 18
SetI ASST 5 cut(s) 11, 21, 70, 126, 214
SfuI TTCGAA 1 cut(s) 88
SinI GGWCC 1 cut(s) 130
Sse9I AATT 6 cut(s) 23, 75, 84, 101, 112, 157
SsiI CCGC 2 cut(s) 144, 163
StyI CCWWGG 1 cut(s) 138
TaqI TCGA 1 cut(s) 88
TasI AATT 6 cut(s) 23, 75, 84, 101, 112, 157
TauI GCSGC 2 cut(s) 146, 165
TscAI CASTG 1 cut(s) 61
TspRI CASTG 1 cut(s) 61
VpaK11BI GGWCC 1 cut(s) 130
XapI RAATTY 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.