RchiOBHm_Chr5g0073471

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0001041
Physical Location & Seq
Reverse (-)
79477412 .. 79479519
2108 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34835

Sequence Viewer

Length: 1488 bp
ATGTCATTTCTGGACGACGATGTAGTTGGCCTAATTGCTAACAAGGTTTGTGAGAAAGATGATAGAAAGTCCTTCTCCGAGGTCTGCAAGCAATGGTGTAGAGTAGAAGGTCTAAGCCGATCATCACTTGAGGTTTTCCATAACTGGCCCGGTTTGCCCCTTGGTGCACTAACGAGATTCCCAAATGTAGTCGTTTTGGAAGTAAAGTACGTTAGGACTGAGGCCGACCTTGAATTCATAGCCCAAACTTGTCCTAGACTCGAGAGCATTACGGTCCACTCCGATATCCGTATAGAGAGTGATGATATTGTTTTGGGGCCAAAAAGTCTAGTTGCTTTGGGGAATGGGTGTCCACAATTGTCCAGAGTTAAGCTTGTGGGGAGGGAAGCAGTAGGGGATTCGGGAGTTGTGGCGCTTGTTCATTCAGCACGAAACTTGAAGGCTCTGGTTTTGGCATGTGATTTGTGGATCTCAGATCAAGCCTTGAGAGCCATTGGGTCCGCATCTTCCATTAGCACGTTGAAGTTGCCAGGGTCTCGCATTAAGGATGTGGAATTGGGTGTTTTAGCAAATGGGACATCTTCCATCAGCACTTTGGAACTGGTAAGGTGTCGCAAGATTACGGATGTGGGATTGGGTTTTTTGGCAAATGGGTCTATCTCAAAAACCCTCAAGAAATTGGTCCTTGATGGCTGCAACAAAATCACTGATTCTGGAGTCCAGCTTTTGCGGAAAATGTGTAGCTTGGAGCGCCTAGATTTGTCTAACTGCGGGAGTAGAATCACTAATGCTGGAGGTGTGGCAATCTCTGCAATTCAAACCCTCAGGGAATTGCTATTGGTTAATCTTCAGACCGTGTCAAACAGTACCATAGTTGCTCTTGCATGGAACTGCCCCAACTTGGAAATACTTGATTTACGGGGCTGTCAAGCTGTAACAGGAGCTGGCATTCGTGCATTTTCAGGTCATAAGTGTTTGAAACGCCTTGTATTGCTTAACTTACCCTTTCACAATTTTAATGAAGCTGATTTGGAAAGCATAGCCCTTGGATGCCCGTCGTTGGAGTCAGAATCTGTTCTGGTGGACAATGTGATTAAAGTGGTGCATGACAACACTCGAAGAGTCGTCAAGTTCATTAGTATATTCACGCCGTCCTTCAGATTGAATATTGAGCAGATTAACTTGCCCAGCGATTATATGCATCCATGGACATTCTCTTCTCCTCAAGGTTTTGGTGGAGCTGATGTATCCTGCTTTTATTATTGTTCCCCTTTTGCTTCGATACTTATTTCTTTTGTTTCTTGGCTTGAACTTGTTATGGACACTCAATTATTATTCTTGGTTAGTTTTATGGTGCAAGTCTCATTTGTCTGCTTAACTAACCATGTTCATCCCACATTTGCAGCTGAGTATTTGCTGCTGCTGTTGTCTGCTTTTGATGGATATTGCAGCTTGGATTTTAATTCTCTTGCTGCTACTGTTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

495

Amino Acids

53.98

Weight (kDa)

6.17

Isoelectric Point (pI)

36.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7885 PF25372 157 - 257 1.6e-10 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 501, 730, 771
AclWI GGATC 1 cut(s) 476
AcsI RAATTY 1 cut(s) 233
AcuI CTGAAG 2 cut(s) 833, 1141
AfaI GTAC 2 cut(s) 209, 868
AfiI CCNNNNNNNGG 2 cut(s) 901, 1060
AgsI TTSAA 7 cut(s) 233, 439, 523, 818, 979, 1165, 1310
AjnI CCWGG 1 cut(s) 529
AluBI AGCT 9 cut(s) 373, 724, 744, 932, 944, 1025, 1241, 1406, 1452
AluI AGCT 9 cut(s) 373, 724, 744, 932, 944, 1025, 1241, 1406, 1452
Alw21I GWGCWC 1 cut(s) 169
Alw26I GTCTC 2 cut(s) 540, 1366
Alw44I GTGCAC 1 cut(s) 165
AlwI GGATC 1 cut(s) 476
AlwNI CAGNNNCTG 2 cut(s) 944, 1073
Ama87I CYCGRG 1 cut(s) 260
AoxI GGCC 4 cut(s) 28, 146, 222, 317
ApaLI GTGCAC 1 cut(s) 165
ApeKI GCWGC 6 cut(s) 693, 1403, 1417, 1420, 1449, 1472
ApoI RAATTY 1 cut(s) 233
Asp700I GAANNNNTTC 1 cut(s) 1074
AspLEI GCGC 2 cut(s) 415, 753
AspS9I GGNCC 5 cut(s) 147, 274, 317, 498, 682
AsuC2I CCSGG 1 cut(s) 150
AvaI CYCGRG 1 cut(s) 260
AvaII GGWCC 3 cut(s) 274, 498, 682
AxyI CCTNAGG 1 cut(s) 824
BaeGI GKGCMC 1 cut(s) 169
Bbv12I GWGCWC 1 cut(s) 169
BbvI GCAGC 6 cut(s) 680, 1404, 1407, 1415, 1459, 1461
BccI CCATC 3 cut(s) 593, 683, 1433
BceAI ACGGC 1 cut(s) 1135
BciT130I CCWGG 1 cut(s) 531
BciVI GTATCC 1 cut(s) 1258
BcnI CCSGG 1 cut(s) 150
BcoDI GTCTC 2 cut(s) 540, 1366
BfaI CTAG 3 cut(s) 255, 329, 755
BfoI RGCGCY 2 cut(s) 416, 754
BfuI GTATCC 1 cut(s) 1258
BisI GCNGC 6 cut(s) 694, 1404, 1418, 1421, 1450, 1473
BlsI GCNGC 6 cut(s) 695, 1405, 1419, 1422, 1451, 1474
Bme1390I CCNGG 2 cut(s) 150, 531
Bme18I GGWCC 3 cut(s) 274, 498, 682
BmeT110I CYCGRG 1 cut(s) 260
BmgT120I GGNCC 5 cut(s) 147, 274, 317, 498, 682
BmiI GGNNCC 2 cut(s) 318, 499
BmrFI CCNGG 2 cut(s) 150, 531
BmsI GCATC 3 cut(s) 512, 1040, 1210
BpmI CTGGAG 2 cut(s) 735, 813
BpuEI CTTGAG 4 cut(s) 149, 505, 656, 1209
BpuMI CCSGG 1 cut(s) 150
BsaI GGTCTC 1 cut(s) 540
BsaJI CCNNGG 5 cut(s) 78, 160, 530, 1045, 1205
BsaXI ACNNNNNCTCC 2 cut(s) 1230, 1260
Bsc4I CCNNNNNNNGG 2 cut(s) 901, 1060
Bse1I ACTGG 2 cut(s) 149, 606
Bse21I CCTNAGG 1 cut(s) 824
Bse3DI GCAATG 1 cut(s) 98
BseBI CCWGG 1 cut(s) 531
BseDI CCNNGG 5 cut(s) 78, 160, 530, 1045, 1205
BseGI GGATG 5 cut(s) 553, 631, 1055, 1201, 1390
BseLI CCNNNNNNNGG 2 cut(s) 901, 1060
BseMI GCAATG 1 cut(s) 98
BseMII CTCAG 4 cut(s) 210, 486, 838, 1398
BseNI ACTGG 2 cut(s) 149, 606
BseRI GAGGAG 1 cut(s) 1212
BseSI GKGCMC 1 cut(s) 169
BseXI GCAGC 6 cut(s) 680, 1404, 1407, 1415, 1459, 1461
BseYI CCCAGC 1 cut(s) 1187
BshFI GGCC 4 cut(s) 30, 148, 224, 319
BsiHKAI GWGCWC 1 cut(s) 169
BsiHKCI CYCGRG 1 cut(s) 260
BsiSI CCGG 1 cut(s) 150
BslFI GGGAC 1 cut(s) 589
BslI CCNNNNNNNGG 2 cut(s) 901, 1060
BsmAI GTCTC 2 cut(s) 540, 1366
BsmFI GGGAC 1 cut(s) 589
BsmI GAATGC 1 cut(s) 948
BsnI GGCC 4 cut(s) 30, 148, 224, 319
Bso31I GGTCTC 1 cut(s) 540
BsoBI CYCGRG 1 cut(s) 260
Bsp1286I GDGCHC 1 cut(s) 169
Bsp143I GATC 3 cut(s) 119, 468, 475
Bsp19I CCATGG 1 cut(s) 1205
BspACI CCGC 3 cut(s) 501, 730, 771
BspANI GGCC 4 cut(s) 30, 148, 224, 319
BspCNI CTCAG 4 cut(s) 211, 485, 837, 1399
BspLI GGNNCC 2 cut(s) 318, 499
BspPI GGATC 1 cut(s) 476
BspTNI GGTCTC 1 cut(s) 540
BsrDI GCAATG 1 cut(s) 98
BsrI ACTGG 2 cut(s) 149, 606
BssECI CCNNGG 5 cut(s) 78, 160, 530, 1045, 1205
BssMI GATC 3 cut(s) 119, 468, 475
BssT1I CCWWGG 3 cut(s) 160, 1045, 1205
Bst2UI CCWGG 1 cut(s) 531
Bst4CI ACNGT 4 cut(s) 274, 856, 866, 1480
Bst6I CTCTTC 2 cut(s) 1114, 1222
BstAPI GCANNNNNTGC 1 cut(s) 809
BstC8I GCNNGC 2 cut(s) 89, 946
BstDEI CTNAG 5 cut(s) 113, 219, 472, 824, 1407
BstDSI CCRYGG 1 cut(s) 1205
BstF5I GGATG 5 cut(s) 553, 631, 1055, 1201, 1390
BstH2I RGCGCY 2 cut(s) 416, 754
BstHHI GCGC 2 cut(s) 415, 753
BstKTI GATC 3 cut(s) 122, 471, 478
BstMAI GTCTC 2 cut(s) 540, 1366
BstMBI GATC 3 cut(s) 119, 468, 475
BstMWI GCNNNNNNNGC 4 cut(s) 154, 488, 750, 809
BstNI CCWGG 1 cut(s) 531
BstNSI RCATGY 1 cut(s) 459
BstSCI CCNGG 2 cut(s) 148, 529
BstSLI GKGCMC 1 cut(s) 169
BstV1I GCAGC 6 cut(s) 680, 1404, 1407, 1415, 1459, 1461
BstX2I RGATCY 1 cut(s) 468
BstYI RGATCY 1 cut(s) 468
Bsu36I CCTNAGG 1 cut(s) 824
BsuI GTATCC 1 cut(s) 1258
BsuRI GGCC 4 cut(s) 30, 148, 224, 319
BtgI CCRYGG 1 cut(s) 1205
BtsCI GGATG 5 cut(s) 553, 631, 1055, 1201, 1390
BtsIMutI CAGTG 1 cut(s) 705
Cac8I GCNNGC 2 cut(s) 89, 946
CaiI CAGNNNCTG 2 cut(s) 944, 1073
CfoI GCGC 2 cut(s) 415, 753
Cfr13I GGNCC 5 cut(s) 147, 274, 317, 498, 682
Csp6I GTAC 2 cut(s) 208, 867
CviAII CATG 5 cut(s) 456, 885, 1106, 1206, 1385
CviQI GTAC 2 cut(s) 208, 867
DdeI CTNAG 5 cut(s) 113, 219, 472, 824, 1407
DpnI GATC 3 cut(s) 121, 470, 477
DpnII GATC 3 cut(s) 119, 468, 475
Eam1104I CTCTTC 2 cut(s) 1114, 1222
EarI CTCTTC 2 cut(s) 1114, 1222
Eco130I CCWWGG 3 cut(s) 160, 1045, 1205
Eco31I GGTCTC 1 cut(s) 540
Eco32I GATATC 1 cut(s) 286
Eco47I GGWCC 3 cut(s) 274, 498, 682
Eco57I CTGAAG 2 cut(s) 833, 1141
Eco81I CCTNAGG 1 cut(s) 824
Eco88I CYCGRG 1 cut(s) 260
EcoRI GAATTC 1 cut(s) 233
EcoRII CCWGG 1 cut(s) 529
EcoRV GATATC 1 cut(s) 286
EcoT14I CCWWGG 3 cut(s) 160, 1045, 1205
EcoT22I ATGCAT 1 cut(s) 1203
ErhI CCWWGG 3 cut(s) 160, 1045, 1205
FaeI CATG 5 cut(s) 459, 888, 1109, 1209, 1388
FaqI GGGAC 1 cut(s) 589
FatI CATG 5 cut(s) 455, 884, 1105, 1205, 1384
FauI CCCGC 1 cut(s) 764
Fnu4HI GCNGC 6 cut(s) 694, 1404, 1418, 1421, 1450, 1473
FokI GGATG 5 cut(s) 560, 638, 1062, 1188, 1377
Fsp4HI GCNGC 6 cut(s) 694, 1404, 1418, 1421, 1450, 1473
FspBI CTAG 3 cut(s) 255, 329, 755
GlaI GCGC 2 cut(s) 414, 752
GluI GCNGC 6 cut(s) 694, 1404, 1418, 1421, 1450, 1473
GsaI CCCAGC 1 cut(s) 1191
GsuI CTGGAG 2 cut(s) 735, 813
HaeII RGCGCY 2 cut(s) 416, 754
HaeIII GGCC 4 cut(s) 30, 148, 224, 319
HapII CCGG 1 cut(s) 150
HhaI GCGC 2 cut(s) 415, 753
Hin1II CATG 5 cut(s) 459, 888, 1109, 1209, 1388
Hin6I GCGC 2 cut(s) 413, 751
HinP1I GCGC 2 cut(s) 413, 751
HindIII AAGCTT 1 cut(s) 371
HinfI GANTC 9 cut(s) 177, 258, 398, 710, 717, 780, 1064, 1070, 1122
HpaII CCGG 1 cut(s) 150
Hpy166II GTNNAC 4 cut(s) 167, 277, 353, 1084
Hpy188I TCNGA 6 cut(s) 79, 283, 475, 852, 1069, 1160
Hpy188III TCNNGA 6 cut(s) 11, 262, 363, 402, 673, 714
Hpy8I GTNNAC 4 cut(s) 167, 277, 353, 1084
Hpy99I CGWCG 2 cut(s) 20, 1060
HpyAV CCTTC 4 cut(s) 82, 101, 433, 1165
HpyCH4III ACNGT 4 cut(s) 274, 856, 866, 1480
HpyCH4IV ACGT 2 cut(s) 210, 518
HpyF10VI GCNNNNNNNGC 4 cut(s) 154, 488, 750, 809
HpyF3I CTNAG 5 cut(s) 113, 219, 472, 824, 1407
HpySE526I ACGT 2 cut(s) 210, 518
Hsp92II CATG 5 cut(s) 459, 888, 1109, 1209, 1388
HspAI GCGC 2 cut(s) 413, 751
Kzo9I GATC 3 cut(s) 119, 468, 475
LmnI GCTCC 3 cut(s) 748, 941, 1238
Lsp1109I GCAGC 6 cut(s) 680, 1404, 1407, 1415, 1459, 1461
LweI GCATC 3 cut(s) 512, 1040, 1210
MaeI CTAG 3 cut(s) 255, 329, 755
MaeII ACGT 2 cut(s) 210, 518
MaeIII GTNAC 1 cut(s) 934
MalI GATC 3 cut(s) 121, 470, 477
MboI GATC 3 cut(s) 119, 468, 475
MboII GAAGA 5 cut(s) 498, 573, 839, 1131, 1209
MfeI CAATTG 1 cut(s) 356
MflI RGATCY 1 cut(s) 468
MhlI GDGCHC 1 cut(s) 169
MlyI GAGTC 4 cut(s) 252, 726, 1073, 1131
MmeI TCCRAC 1 cut(s) 1041
MnlI CCTC 8 cut(s) 73, 124, 214, 375, 680, 788, 833, 1233
Mph1103I ATGCAT 1 cut(s) 1203
MroXI GAANNNNTTC 1 cut(s) 1074
MseI TTAA 9 cut(s) 369, 543, 843, 996, 1017, 1095, 1179, 1376, 1461
MspA1I CMGCKG 1 cut(s) 1406
MspI CCGG 1 cut(s) 150
MspR9I CCNGG 2 cut(s) 150, 531
MunI CAATTG 1 cut(s) 356
Mva1269I GAATGC 1 cut(s) 948
MvaI CCWGG 1 cut(s) 531
MwoI GCNNNNNNNGC 4 cut(s) 154, 488, 750, 809
NciI CCSGG 1 cut(s) 150
NcoI CCATGG 1 cut(s) 1205
NdeII GATC 3 cut(s) 119, 468, 475
NlaIII CATG 5 cut(s) 459, 888, 1109, 1209, 1388
NlaIV GGNNCC 2 cut(s) 318, 499
NsiI ATGCAT 1 cut(s) 1203
NspI RCATGY 1 cut(s) 459
PaeR7I CTCGAG 1 cut(s) 260
PctI GAATGC 1 cut(s) 948
PdmI GAANNNNTTC 1 cut(s) 1074
PfeI GAWTC 5 cut(s) 177, 398, 710, 780, 1070
PflFI GACNNNGTC 1 cut(s) 856
PkrI GCNGC 6 cut(s) 695, 1405, 1419, 1422, 1451, 1474
PleI GAGTC 4 cut(s) 252, 725, 1072, 1130
PpsI GAGTC 4 cut(s) 252, 725, 1072, 1130
Psp6I CCWGG 1 cut(s) 529
PspFI CCCAGC 1 cut(s) 1187
PspGI CCWGG 1 cut(s) 529
PspN4I GGNNCC 2 cut(s) 318, 499
PspPI GGNCC 5 cut(s) 147, 274, 317, 498, 682
PstNI CAGNNNCTG 2 cut(s) 944, 1073
PsuI RGATCY 1 cut(s) 468
PsyI GACNNNGTC 1 cut(s) 856
PvuII CAGCTG 1 cut(s) 1406
RsaI GTAC 2 cut(s) 209, 868
RsaNI GTAC 2 cut(s) 208, 867
SaqAI TTAA 9 cut(s) 369, 543, 843, 996, 1017, 1095, 1179, 1376, 1461
SatI GCNGC 6 cut(s) 694, 1404, 1418, 1421, 1450, 1473
Sau3AI GATC 3 cut(s) 119, 468, 475
Sau96I GGNCC 5 cut(s) 147, 274, 317, 498, 682
SchI GAGTC 4 cut(s) 252, 726, 1073, 1131
ScrFI CCNGG 2 cut(s) 150, 531
SduI GDGCHC 1 cut(s) 169
SfaNI GCATC 3 cut(s) 512, 1040, 1210
Sfr274I CTCGAG 1 cut(s) 260
SinI GGWCC 3 cut(s) 274, 498, 682
SlaI CTCGAG 1 cut(s) 260
SmlI CTYRAG 5 cut(s) 128, 260, 484, 671, 1224
SmoI CTYRAG 5 cut(s) 128, 260, 484, 671, 1224
SsiI CCGC 3 cut(s) 501, 730, 771
SspI AATATT 1 cut(s) 1168
SspMI CTAG 3 cut(s) 255, 329, 755
StyD4I CCNGG 2 cut(s) 148, 529
StyI CCWWGG 3 cut(s) 160, 1045, 1205
TaaI ACNGT 4 cut(s) 274, 856, 866, 1480
TaiI ACGT 2 cut(s) 213, 521
TaqI TCGA 3 cut(s) 261, 1117, 1280
TfiI GAWTC 5 cut(s) 177, 398, 710, 780, 1070
Tru1I TTAA 9 cut(s) 369, 543, 843, 996, 1017, 1095, 1179, 1376, 1461
Tru9I TTAA 9 cut(s) 369, 543, 843, 996, 1017, 1095, 1179, 1376, 1461
TscAI CASTG 1 cut(s) 712
TseI GCWGC 6 cut(s) 693, 1403, 1417, 1420, 1449, 1472
TspDTI ATGAA 5 cut(s) 226, 410, 1035, 1123, 1379
TspGWI ACGGA 2 cut(s) 278, 638
TspRI CASTG 1 cut(s) 712
Tth111I GACNNNGTC 1 cut(s) 856
VneI GTGCAC 1 cut(s) 165
VpaK11BI GGWCC 3 cut(s) 274, 498, 682
XapI RAATTY 1 cut(s) 233
XceI RCATGY 1 cut(s) 459
XcmI CCANNNNNNNNNTGG 1 cut(s) 592
XhoI CTCGAG 1 cut(s) 260
XmnI GAANNNNTTC 1 cut(s) 1074
XspI CTAG 3 cut(s) 255, 329, 755
Zsp2I ATGCAT 1 cut(s) 1203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.