RLG00000004916

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001041
Physical Location & Seq
Forward (+)
63650466 .. 63653510
3045 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004916

Sequence Viewer

Length: 1461 bp
ATGGTAGATGGGAGGAGGAAGGAGAGTTCAGAGGCGCTGAGGGGTGGGTTTTCGGATCTTGCAGACCTAAAGGGGTTGGGATTTGGAACTTGGTTGCTGGTTTGGGATCGGAGGAGATTGAAACGGATCTCGACCTTCAGTTTGGGGGAGTCGGGGCGATCTGGGCGGTGGTGGAGGGATGGTAGTGGAGTCGGCGCGATCTGGGTGGTGGTGGAGGGATGGCAGTGGTGGTGGTGGTGTCGGGTTGGGGTTGACTCTGTAAGATCTGGGCTTGCCTTGCCTAACAGGCTCAATTCTTGGGCTCTAGCCAAATCATGGCCCAATCTTAAACTCGAGACACACACACAGCCGCCCAAAATGGCCGAGCACACCCAAATAGCAGGGCCAATTACTCTGCTGTCCGAAGATTTAGTTGCCTTAATCCTTAACAAGGTGACCGACCAAGACGATAGAAACTCGTGCTCCGAGGTTTGCAAGCAGTGGTTAAGACTCGAAGGTATAAGCCGATCATCACTCTTCGTTCGCAAACCCGAGTTTCCTCTAACTATACTGAACAGGTTCCCGAATTTAGTCCAATTCCAAACCACCCAGCTCACCACCGACTCCGACCTCGAGTTCATCGCCCGAACATGTCCCAAAATCGAGGAGGTCAAGGTCGCCGACTTCACTTCACCCGAAGAAGGTTTCTTGGGTCGAAATGGCCTGTCGGCTTTGGCATGTGGGTGTCCCAAATTGTCCAAGGTGTCGCTGATCGGGGACAAGATTGGGAATGCCGGAGTTCTGGAGCTTGTGAATTCTGCCCGGAGTTTGTCGTCTTTGGAATTGGGACATGACTTGATCGGGGACCCGGCTCTCAGAGCAATCGCTTCGTCTTCGATTACGGTTCTCAAGTTGAAGAGCTGCTGCAATGTTACCGATCACGGATTGGGTTGTTTGGCAACTGGGTCTACCTCGAAAACGCTCAAGAAATTGGTGCTGAAGATGTGTGGTAAGATCACTGATGATGGGTTGAAGGATTTGAAGAAAATGCGGAGCTTGGAGGAGCTGACTTTGTCTTGGTGTCAGGGAGAAATAACAGATGTTGGAGGTATGGCAATCTCTGCCATTCGAAATCTTAAAGAATTGAAATTGAATGGTCTTTACGGCTTGTCAGACCTTACCGTTTCTGCTCTTGCATTTTGCAAAAAGTTGCAAGTGCTTGATTTACGTGGTTGTGAAGGGGTGACCGGACCTGGCATTCGGGCATTTTCAAGTCATCAAGGCTTGAGACGCCTGGTGTTGCTCGGTTTGAGGAATTTTGGTCTTGCTGATGTAGAAAGCCTGGCGCTTGGATGCTCGTCATTGGAGGCTGAATCTGTTGTGGTGGATGAGAGTTGGAGGCAGGATCCGACTTGGAGCGATGAGTTGATGCATGAGAACACTAGAAGAGTTCTCAAGTTCTCTGTATATAGTTATCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

487

Amino Acids

53.59

Weight (kDa)

8.58

Isoelectric Point (pI)

38.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box_5 PF18511 135 - 170 1.6e-07 F-box
DUF7885 PF25372 309 - 421 3.7e-07 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 315
AccI GTMKAC 1 cut(s) 947
AccII CGCG 1 cut(s) 197
AciI CCGC 3 cut(s) 166, 350, 1030
AclWI GGATC 5 cut(s) 63, 114, 134, 1379, 1392
AcoI YGGCCR 1 cut(s) 360
AcsI RAATTY 3 cut(s) 565, 793, 1294
AcuI CTGAAG 2 cut(s) 121, 998
AcyI GRCGYC 1 cut(s) 1270
AfiI CCNNNNNNNGG 3 cut(s) 315, 430, 680
AflIII ACRYGT 1 cut(s) 629
AgsI TTSAA 7 cut(s) 121, 895, 1012, 1021, 1126, 1132, 1251
AjnI CCWGG 3 cut(s) 1231, 1272, 1320
AloI GAACNNNNNNTCC 2 cut(s) 10, 42
AluBI AGCT 5 cut(s) 592, 787, 900, 1035, 1045
AluI AGCT 5 cut(s) 592, 787, 900, 1035, 1045
Alw21I GWGCWC 2 cut(s) 369, 464
Alw26I GTCTC 2 cut(s) 329, 1261
AlwI GGATC 5 cut(s) 63, 114, 134, 1379, 1392
Ama87I CYCGRG 3 cut(s) 332, 530, 611
AoxI GGCC 4 cut(s) 317, 360, 383, 700
ApeKI GCWGC 2 cut(s) 900, 903
ApoI RAATTY 3 cut(s) 565, 793, 1294
ArsI GACNNNNNNTTYG 4 cut(s) 124, 156, 1221, 1253
Asp700I GAANNNNTTC 1 cut(s) 557
AspLEI GCGC 3 cut(s) 37, 197, 1327
AspS9I GGNCC 4 cut(s) 318, 383, 844, 1229
AsuC2I CCSGG 2 cut(s) 802, 848
AsuHPI GGTGA 4 cut(s) 445, 586, 663, 1234
AsuII TTCGAA 1 cut(s) 1108
AvaI CYCGRG 3 cut(s) 332, 530, 611
AvaII GGWCC 2 cut(s) 844, 1229
BamHI GGATCC 1 cut(s) 1384
BanII GRGCYC 1 cut(s) 304
BauI CACGAG 1 cut(s) 457
BbsI GAAGAC 1 cut(s) 864
Bbv12I GWGCWC 2 cut(s) 369, 464
BbvCI CCTCAGC 1 cut(s) 38
BbvI GCAGC 2 cut(s) 887, 890
BccI CCATC 4 cut(s) 2, 173, 213, 998
BceAI ACGGC 1 cut(s) 1159
BcgI CGANNNNNNTGC 2 cut(s) 849, 883
BciT130I CCWGG 3 cut(s) 1233, 1274, 1322
BcnI CCSGG 2 cut(s) 802, 848
BcoDI GTCTC 2 cut(s) 329, 1261
BfaI CTAG 3 cut(s) 305, 1422, 1459
BfoI RGCGCY 2 cut(s) 38, 1328
BglI GCCNNNNNGGC 1 cut(s) 286
BglII AGATCT 1 cut(s) 263
BisI GCNGC 3 cut(s) 350, 901, 904
BlsI GCNGC 3 cut(s) 351, 902, 905
Bme1390I CCNGG 5 cut(s) 802, 848, 1233, 1274, 1322
Bme18I GGWCC 2 cut(s) 844, 1229
BmeT110I CYCGRG 3 cut(s) 332, 530, 611
BmgT120I GGNCC 4 cut(s) 318, 383, 844, 1229
BmiI GGNNCC 4 cut(s) 560, 845, 846, 1386
BmrFI CCNGG 5 cut(s) 802, 848, 1233, 1274, 1322
BmrI ACTGGG 1 cut(s) 951
BmsI GCATC 2 cut(s) 1322, 1398
BmuI ACTGGG 1 cut(s) 951
BpiI GAAGAC 1 cut(s) 864
BpmI CTGGAG 1 cut(s) 803
Bpu10I CCTNAGC 1 cut(s) 38
Bpu14I TTCGAA 1 cut(s) 1108
BpuEI CTTGAG 4 cut(s) 872, 947, 1285, 1418
BpuMI CCSGG 2 cut(s) 802, 848
BsaAI YACGTR 1 cut(s) 1208
BsaHI GRCGYC 1 cut(s) 1270
BsaJI CCNNGG 2 cut(s) 465, 738
BsaWI WCCGGW 1 cut(s) 1226
BsaXI ACNNNNNCTCC 4 cut(s) 166, 196, 446, 476
Bsc4I CCNNNNNNNGG 3 cut(s) 315, 430, 680
Bse1I ACTGG 1 cut(s) 946
Bse3DI GCAATG 1 cut(s) 913
BseBI CCWGG 3 cut(s) 1233, 1274, 1322
BseDI CCNNGG 2 cut(s) 465, 738
BseGI GGATG 4 cut(s) 184, 224, 1337, 1372
BseLI CCNNNNNNNGG 3 cut(s) 315, 430, 680
BseMI GCAATG 1 cut(s) 913
BseMII CTCAG 2 cut(s) 29, 868
BseNI ACTGG 1 cut(s) 946
BseRI GAGGAG 4 cut(s) 28, 127, 659, 1055
BseXI GCAGC 2 cut(s) 887, 890
BseYI CCCAGC 1 cut(s) 588
Bsh1236I CGCG 1 cut(s) 197
BshFI GGCC 4 cut(s) 319, 362, 385, 702
BsiHKAI GWGCWC 2 cut(s) 369, 464
BsiHKCI CYCGRG 3 cut(s) 332, 530, 611
BsiSI CCGG 4 cut(s) 774, 802, 848, 1227
BslFI GGGAC 5 cut(s) 618, 711, 770, 840, 857
BslI CCNNNNNNNGG 3 cut(s) 315, 430, 680
BsmAI GTCTC 2 cut(s) 329, 1261
BsmBI CGTCTC 1 cut(s) 1261
BsmFI GGGAC 5 cut(s) 618, 711, 770, 840, 857
BsmI GAATGC 2 cut(s) 775, 1236
BsnI GGCC 4 cut(s) 319, 362, 385, 702
BsoBI CYCGRG 3 cut(s) 332, 530, 611
Bsp119I TTCGAA 1 cut(s) 1108
Bsp1286I GDGCHC 3 cut(s) 304, 369, 464
BspACI CCGC 3 cut(s) 166, 350, 1030
BspANI GGCC 4 cut(s) 319, 362, 385, 702
BspCNI CTCAG 2 cut(s) 30, 867
BspFNI CGCG 1 cut(s) 197
BspLI GGNNCC 4 cut(s) 560, 845, 846, 1386
BspPI GGATC 5 cut(s) 63, 114, 134, 1379, 1392
BspQI GCTCTTC 1 cut(s) 890
BspT104I TTCGAA 1 cut(s) 1108
BsrDI GCAATG 1 cut(s) 913
BsrI ACTGG 1 cut(s) 946
BssECI CCNNGG 2 cut(s) 465, 738
BssNI GRCGYC 1 cut(s) 1270
BssSI CACGAG 1 cut(s) 457
BssT1I CCWWGG 1 cut(s) 738
Bst2BI CACGAG 1 cut(s) 457
Bst2UI CCWGG 3 cut(s) 1233, 1274, 1322
Bst4CI ACNGT 2 cut(s) 883, 1162
Bst6I CTCTTC 3 cut(s) 521, 890, 1420
BstACI GRCGYC 1 cut(s) 1270
BstAPI GCANNNNNTGC 1 cut(s) 1100
BstBAI YACGTR 1 cut(s) 1208
BstBI TTCGAA 1 cut(s) 1108
BstC8I GCNNGC 2 cut(s) 273, 476
BstDEI CTNAG 2 cut(s) 38, 854
BstEII GGTNACC 2 cut(s) 433, 1222
BstENI CCTNNNNNAGG 1 cut(s) 428
BstF5I GGATG 4 cut(s) 184, 224, 1337, 1372
BstFNI CGCG 1 cut(s) 197
BstH2I RGCGCY 2 cut(s) 38, 1328
BstHHI GCGC 3 cut(s) 37, 197, 1327
BstMAI GTCTC 2 cut(s) 329, 1261
BstMWI GCNNNNNNNGC 6 cut(s) 163, 277, 286, 857, 1100, 1269
BstNI CCWGG 3 cut(s) 1233, 1274, 1322
BstNSI RCATGY 2 cut(s) 633, 720
BstPI GGTNACC 2 cut(s) 433, 1222
BstSCI CCNGG 5 cut(s) 800, 846, 1231, 1272, 1320
BstUI CGCG 1 cut(s) 197
BstV1I GCAGC 2 cut(s) 887, 890
BstV2I GAAGAC 1 cut(s) 864
BstX2I RGATCY 4 cut(s) 55, 126, 263, 1384
BstYI RGATCY 4 cut(s) 55, 126, 263, 1384
BsuRI GGCC 4 cut(s) 319, 362, 385, 702
BtgZI GCGATG 2 cut(s) 604, 1413
BtsCI GGATG 4 cut(s) 184, 224, 1337, 1372
BtsI GCAGTG 2 cut(s) 230, 485
BtsIMutI CAGTG 3 cut(s) 230, 485, 996
Cac8I GCNNGC 2 cut(s) 273, 476
CfoI GCGC 3 cut(s) 37, 197, 1327
Cfr13I GGNCC 4 cut(s) 318, 383, 844, 1229
CseI GACGC 1 cut(s) 1278
CviAII CATG 5 cut(s) 315, 630, 717, 830, 1412
DdeI CTNAG 2 cut(s) 38, 854
EaeI YGGCCR 1 cut(s) 360
Eam1104I CTCTTC 3 cut(s) 521, 890, 1420
EarI CTCTTC 3 cut(s) 521, 890, 1420
Eco130I CCWWGG 1 cut(s) 738
Eco24I GRGCYC 1 cut(s) 304
Eco47I GGWCC 2 cut(s) 844, 1229
Eco57I CTGAAG 2 cut(s) 121, 998
Eco88I CYCGRG 3 cut(s) 332, 530, 611
Eco91I GGTNACC 2 cut(s) 433, 1222
EcoNI CCTNNNNNAGG 1 cut(s) 428
EcoO109I RGGNCCY 1 cut(s) 844
EcoO65I GGTNACC 2 cut(s) 433, 1222
EcoRI GAATTC 1 cut(s) 793
EcoRII CCWGG 3 cut(s) 1231, 1272, 1320
EcoT14I CCWWGG 1 cut(s) 738
EcoT22I ATGCAT 1 cut(s) 1413
EcoT38I GRGCYC 1 cut(s) 304
ErhI CCWWGG 1 cut(s) 738
Esp3I CGTCTC 1 cut(s) 1261
FaeI CATG 5 cut(s) 318, 633, 720, 833, 1415
FaqI GGGAC 5 cut(s) 618, 711, 770, 840, 857
FatI CATG 5 cut(s) 314, 629, 716, 829, 1411
FblI GTMKAC 1 cut(s) 947
Fnu4HI GCNGC 3 cut(s) 350, 901, 904
FokI GGATG 4 cut(s) 191, 231, 1344, 1379
FriOI GRGCYC 1 cut(s) 304
Fsp4HI GCNGC 3 cut(s) 350, 901, 904
FspBI CTAG 3 cut(s) 305, 1422, 1459
GlaI GCGC 3 cut(s) 36, 196, 1326
GluI GCNGC 3 cut(s) 350, 901, 904
GsaI CCCAGC 1 cut(s) 592
GsuI CTGGAG 1 cut(s) 803
HaeII RGCGCY 2 cut(s) 38, 1328
HaeIII GGCC 4 cut(s) 319, 362, 385, 702
HapII CCGG 4 cut(s) 774, 802, 848, 1227
HgaI GACGC 1 cut(s) 1278
HhaI GCGC 3 cut(s) 37, 197, 1327
Hin1I GRCGYC 1 cut(s) 1270
Hin1II CATG 5 cut(s) 318, 633, 720, 833, 1415
Hin6I GCGC 3 cut(s) 35, 195, 1325
HinP1I GCGC 3 cut(s) 35, 195, 1325
HincII GTYRAC 1 cut(s) 253
HindII GTYRAC 1 cut(s) 253
HinfI GANTC 6 cut(s) 149, 189, 254, 489, 602, 1352
HpaII CCGG 4 cut(s) 774, 802, 848, 1227
HphI GGTGA 4 cut(s) 445, 586, 663, 1234
Hpy166II GTNNAC 2 cut(s) 253, 948
Hpy188I TCNGA 9 cut(s) 31, 55, 111, 403, 466, 607, 857, 1153, 1389
Hpy188III TCNNGA 5 cut(s) 130, 334, 562, 782, 964
Hpy8I GTNNAC 2 cut(s) 253, 948
HpyAV CCTTC 6 cut(s) 13, 145, 488, 674, 1006, 1211
HpyCH4III ACNGT 2 cut(s) 883, 1162
HpyCH4IV ACGT 1 cut(s) 1207
HpyCH4V TGCA 7 cut(s) 62, 474, 906, 1175, 1182, 1192, 1411
HpyF10VI GCNNNNNNNGC 6 cut(s) 163, 277, 286, 857, 1100, 1269
HpyF3I CTNAG 2 cut(s) 38, 854
HpySE526I ACGT 1 cut(s) 1207
Hsp92I GRCGYC 1 cut(s) 1270
Hsp92II CATG 5 cut(s) 318, 633, 720, 833, 1415
HspAI GCGC 3 cut(s) 35, 195, 1325
KflI GGGWCCC 1 cut(s) 844
LguI GCTCTTC 1 cut(s) 890
LmnI GCTCC 5 cut(s) 467, 784, 1032, 1042, 1395
Lsp1109I GCAGC 2 cut(s) 887, 890
LweI GCATC 2 cut(s) 1322, 1398
MaeI CTAG 3 cut(s) 305, 1422, 1459
MaeII ACGT 1 cut(s) 1207
MaeIII GTNAC 3 cut(s) 433, 910, 1222
MboII GAAGA 8 cut(s) 416, 508, 689, 864, 907, 991, 1033, 1437
MflI RGATCY 4 cut(s) 55, 126, 263, 1384
MhlI GDGCHC 3 cut(s) 304, 369, 464
MlyI GAGTC 5 cut(s) 158, 198, 248, 483, 596
MmeI TCCRAC 4 cut(s) 630, 1063, 1355, 1412
Mph1103I ATGCAT 1 cut(s) 1413
MroXI GAANNNNTTC 1 cut(s) 557
MseI TTAA 5 cut(s) 327, 419, 426, 485, 1116
MslI CAYNNNNRTG 1 cut(s) 721
MspI CCGG 4 cut(s) 774, 802, 848, 1227
MspR9I CCNGG 5 cut(s) 802, 848, 1233, 1274, 1322
Mva1269I GAATGC 2 cut(s) 775, 1236
MvaI CCWGG 3 cut(s) 1233, 1274, 1322
MvnI CGCG 1 cut(s) 197
MwoI GCNNNNNNNGC 6 cut(s) 163, 277, 286, 857, 1100, 1269
NciI CCSGG 2 cut(s) 802, 848
NlaIII CATG 5 cut(s) 318, 633, 720, 833, 1415
NlaIV GGNNCC 4 cut(s) 560, 845, 846, 1386
NmeAIII GCCGAG 1 cut(s) 388
NmuCI GTSAC 2 cut(s) 433, 1222
NsiI ATGCAT 1 cut(s) 1413
NspI RCATGY 2 cut(s) 633, 720
NspV TTCGAA 1 cut(s) 1108
PaeR7I CTCGAG 2 cut(s) 332, 611
PciI ACATGT 1 cut(s) 629
PciSI GCTCTTC 1 cut(s) 890
PctI GAATGC 2 cut(s) 775, 1236
PdmI GAANNNNTTC 1 cut(s) 557
PfeI GAWTC 1 cut(s) 1352
PflFI GACNNNGTC 1 cut(s) 1051
PflMI CCANNNNNTGG 1 cut(s) 315
PkrI GCNGC 3 cut(s) 351, 902, 905
PleI GAGTC 5 cut(s) 157, 197, 248, 483, 596
PpsI GAGTC 5 cut(s) 157, 197, 248, 483, 596
Ppu21I YACGTR 1 cut(s) 1208
PpuMI RGGWCCY 1 cut(s) 844
PscI ACATGT 1 cut(s) 629
Psp5II RGGWCCY 1 cut(s) 844
Psp6I CCWGG 3 cut(s) 1231, 1272, 1320
PspEI GGTNACC 2 cut(s) 433, 1222
PspFI CCCAGC 1 cut(s) 588
PspGI CCWGG 3 cut(s) 1231, 1272, 1320
PspN4I GGNNCC 4 cut(s) 560, 845, 846, 1386
PspPI GGNCC 4 cut(s) 318, 383, 844, 1229
PspPPI RGGWCCY 1 cut(s) 844
PspXI VCTCGAGB 1 cut(s) 611
PsuI RGATCY 4 cut(s) 55, 126, 263, 1384
PsyI GACNNNGTC 1 cut(s) 1051
RseI CAYNNNNRTG 1 cut(s) 721
SapI GCTCTTC 1 cut(s) 890
SaqAI TTAA 5 cut(s) 327, 419, 426, 485, 1116
SatI GCNGC 3 cut(s) 350, 901, 904
Sau96I GGNCC 4 cut(s) 318, 383, 844, 1229
SchI GAGTC 5 cut(s) 158, 198, 248, 483, 596
ScrFI CCNGG 5 cut(s) 802, 848, 1233, 1274, 1322
SduI GDGCHC 3 cut(s) 304, 369, 464
SfaNI GCATC 2 cut(s) 1322, 1398
Sfr274I CTCGAG 2 cut(s) 332, 611
SfuI TTCGAA 1 cut(s) 1108
SinI GGWCC 2 cut(s) 844, 1229
SlaI CTCGAG 2 cut(s) 332, 611
SmiMI CAYNNNNRTG 1 cut(s) 721
SmlI CTYRAG 6 cut(s) 332, 611, 887, 962, 1264, 1433
SmoI CTYRAG 6 cut(s) 332, 611, 887, 962, 1264, 1433
SsiI CCGC 3 cut(s) 166, 350, 1030
SspMI CTAG 3 cut(s) 305, 1422, 1459
StyD4I CCNGG 5 cut(s) 800, 846, 1231, 1272, 1320
StyI CCWWGG 1 cut(s) 738
TaaI ACNGT 2 cut(s) 883, 1162
TaiI ACGT 1 cut(s) 1210
TaqI TCGA 9 cut(s) 131, 333, 492, 612, 642, 694, 875, 953, 1108
TaqII GACCGA 1 cut(s) 452
TauI GCSGC 1 cut(s) 352
TfiI GAWTC 1 cut(s) 1352
Tru1I TTAA 5 cut(s) 327, 419, 426, 485, 1116
Tru9I TTAA 5 cut(s) 327, 419, 426, 485, 1116
TscAI CASTG 3 cut(s) 230, 485, 1003
TseFI GTSAC 2 cut(s) 433, 1222
TseI GCWGC 2 cut(s) 900, 903
Tsp45I GTSAC 2 cut(s) 433, 1222
TspDTI ATGAA 1 cut(s) 607
TspGWI ACGGA 2 cut(s) 139, 936
TspRI CASTG 3 cut(s) 230, 485, 1003
Tth111I GACNNNGTC 1 cut(s) 1051
Van91I CCANNNNNTGG 1 cut(s) 315
VpaK11BI GGWCC 2 cut(s) 844, 1229
XagI CCTNNNNNAGG 1 cut(s) 428
XapI RAATTY 3 cut(s) 565, 793, 1294
XceI RCATGY 2 cut(s) 633, 720
XhoI CTCGAG 2 cut(s) 332, 611
XmiI GTMKAC 1 cut(s) 947
XmnI GAANNNNTTC 1 cut(s) 557
XspI CTAG 3 cut(s) 305, 1422, 1459
Zsp2I ATGCAT 1 cut(s) 1413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.