RchiOBHm_Chr7g0185401

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0001041
Physical Location & Seq
Reverse (-)
5514593 .. 5517806
3214 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16545

Sequence Viewer

Length: 909 bp
ATGGCCGCGCACACCCGAATAGCAGGGCCAATTACTCTGCTGTCCGAAGATTTAGTTGCCTTAATCCTTAACAAGGTGACCGACCTAGACGATAGAAACTCGTGCTCCGAGGTTTGCCAGCTATGGTTAAAAGTCGAAGGTATAAGCCGATCATCACTCTTCGTTCGCAAACCCGGGTTTCCTCTAACTATACTGAACAGGTTCCCGAATTTAGTCCAATTCCAAACCACCCAGCTCACCACCGACTCCGACCTCGAGTTCATCGCCCGAACATGTCCCAAAATCGAGGACTTCAAGGTCGCCGACTTCACTTCACCCGAAGAAGGTTTCTTGGGTCGAAATGGCCTGTCGGCTTTGGCATGTGGGTGTCCCAAATTGTCCAAGGTGTCGCTGATCGGGGACAAGATTGGGAATGCCGGAGTTGTGGAGCTTGTGAATTCTGCCCGGAGTTTGTCGTCTTTGGAATTGGGACATGACCTGATCGGGGACCCGGCTCTCAGAGCAATCGCTTCGTCTTCGATTACGGTTCTCAAGTTGAAGAGCTGCTGCAATGTTACCGATCACGGATTGGGTTGTTTGGCAACTGGGTCTACCTCGAAAACGCTCAGGAAATTGGTGCTGAAGATGTGTGGTAAGATCACTGATGATGGGTTGAAGGATTTGAAGAAAATGCGGAGCTTGGAGGAGCTGACTTTGTCTTGGTGTCAGGGAGAAATAACAGATGTTGGAGGTATGGCAATCTCTGCCATTCGAAATCTTAAAGAATTGAAATTGAATGCTCTTTACGGCTTGTCAGACCTTACCGTTTCTGCTCTCGCATTTTGCAAAAAGTTGCAAGTACTTGATTTAAGCGGTTGTGAAGGGGTGACCGGACCCGGCATTCGTGCATTTTCAATCATCAGTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

302

Amino Acids

32.3

Weight (kDa)

7.94

Isoelectric Point (pI)

30.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 296
AccI GTMKAC 1 cut(s) 590
AccII CGCG 1 cut(s) 8
AciI CCGC 3 cut(s) 6, 673, 852
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 208, 436
AcuI CTGAAG 1 cut(s) 641
AfaI GTAC 1 cut(s) 840
AfiI CCNNNNNNNGG 3 cut(s) 73, 323, 484
AflIII ACRYGT 1 cut(s) 272
AgsI TTSAA 7 cut(s) 295, 538, 655, 664, 769, 775, 894
AluBI AGCT 6 cut(s) 121, 235, 430, 543, 678, 688
AluI AGCT 6 cut(s) 121, 235, 430, 543, 678, 688
Alw21I GWGCWC 1 cut(s) 107
Ama87I CYCGRG 2 cut(s) 173, 254
AoxI GGCC 3 cut(s) 3, 26, 343
ApeKI GCWGC 2 cut(s) 543, 546
ApoI RAATTY 2 cut(s) 208, 436
ArsI GACNNNNNNTTYG 2 cut(s) 864, 896
Asp700I GAANNNNTTC 1 cut(s) 200
AspLEI GCGC 1 cut(s) 10
AspS9I GGNCC 3 cut(s) 26, 487, 872
AsuC2I CCSGG 5 cut(s) 174, 175, 445, 491, 876
AsuHPI GGTGA 4 cut(s) 88, 229, 306, 877
AsuII TTCGAA 1 cut(s) 751
AvaI CYCGRG 2 cut(s) 173, 254
AvaII GGWCC 2 cut(s) 487, 872
BauI CACGAG 1 cut(s) 100
BbsI GAAGAC 1 cut(s) 507
Bbv12I GWGCWC 1 cut(s) 107
BbvI GCAGC 2 cut(s) 530, 533
BccI CCATC 1 cut(s) 641
BceAI ACGGC 1 cut(s) 802
BcgI CGANNNNNNTGC 2 cut(s) 492, 526
BcnI CCSGG 5 cut(s) 174, 175, 445, 491, 876
BfaI CTAG 1 cut(s) 86
BisI GCNGC 3 cut(s) 6, 544, 547
BlsI GCNGC 3 cut(s) 7, 545, 548
BmcAI AGTACT 1 cut(s) 840
Bme1390I CCNGG 5 cut(s) 174, 175, 445, 491, 876
Bme18I GGWCC 2 cut(s) 487, 872
BmeT110I CYCGRG 2 cut(s) 173, 254
BmgT120I GGNCC 3 cut(s) 26, 487, 872
BmiI GGNNCC 4 cut(s) 203, 488, 489, 874
BmrFI CCNGG 5 cut(s) 174, 175, 445, 491, 876
BmrI ACTGGG 1 cut(s) 594
BmuI ACTGGG 1 cut(s) 594
BpiI GAAGAC 1 cut(s) 507
Bpu10I CCTNAGC 1 cut(s) 605
Bpu14I TTCGAA 1 cut(s) 751
BpuEI CTTGAG 1 cut(s) 515
BpuMI CCSGG 5 cut(s) 174, 175, 445, 491, 876
BsaJI CCNNGG 3 cut(s) 108, 173, 381
BsaWI WCCGGW 1 cut(s) 869
BsaXI ACNNNNNCTCC 2 cut(s) 89, 119
Bsc4I CCNNNNNNNGG 3 cut(s) 73, 323, 484
Bse1I ACTGG 1 cut(s) 589
Bse3DI GCAATG 1 cut(s) 556
BseDI CCNNGG 3 cut(s) 108, 173, 381
BseLI CCNNNNNNNGG 3 cut(s) 73, 323, 484
BseMI GCAATG 1 cut(s) 556
BseMII CTCAG 2 cut(s) 511, 619
BseNI ACTGG 1 cut(s) 589
BseRI GAGGAG 1 cut(s) 698
BseXI GCAGC 2 cut(s) 530, 533
BseYI CCCAGC 1 cut(s) 231
Bsh1236I CGCG 1 cut(s) 8
BshFI GGCC 3 cut(s) 5, 28, 345
BsiHKAI GWGCWC 1 cut(s) 107
BsiHKCI CYCGRG 2 cut(s) 173, 254
BsiSI CCGG 6 cut(s) 174, 417, 445, 491, 870, 876
BslFI GGGAC 5 cut(s) 261, 354, 413, 483, 500
BslI CCNNNNNNNGG 3 cut(s) 73, 323, 484
BsmFI GGGAC 5 cut(s) 261, 354, 413, 483, 500
BsmI GAATGC 3 cut(s) 418, 781, 879
BsnI GGCC 3 cut(s) 5, 28, 345
BsoBI CYCGRG 2 cut(s) 173, 254
Bsp119I TTCGAA 1 cut(s) 751
Bsp1286I GDGCHC 1 cut(s) 107
Bsp143I GATC 5 cut(s) 149, 393, 480, 559, 636
BspACI CCGC 3 cut(s) 6, 673, 852
BspANI GGCC 3 cut(s) 5, 28, 345
BspCNI CTCAG 2 cut(s) 510, 618
BspFNI CGCG 1 cut(s) 8
BspLI GGNNCC 4 cut(s) 203, 488, 489, 874
BspQI GCTCTTC 1 cut(s) 533
BspT104I TTCGAA 1 cut(s) 751
BsrDI GCAATG 1 cut(s) 556
BsrI ACTGG 1 cut(s) 589
BssECI CCNNGG 3 cut(s) 108, 173, 381
BssMI GATC 5 cut(s) 149, 393, 480, 559, 636
BssSI CACGAG 1 cut(s) 100
BssT1I CCWWGG 1 cut(s) 381
Bst2BI CACGAG 1 cut(s) 100
Bst4CI ACNGT 2 cut(s) 526, 805
Bst6I CTCTTC 2 cut(s) 164, 533
BstAPI GCANNNNNTGC 1 cut(s) 743
BstBI TTCGAA 1 cut(s) 751
BstC8I GCNNGC 1 cut(s) 119
BstDEI CTNAG 2 cut(s) 497, 605
BstEII GGTNACC 2 cut(s) 76, 865
BstENI CCTNNNNNAGG 1 cut(s) 71
BstFNI CGCG 1 cut(s) 8
BstHHI GCGC 1 cut(s) 10
BstKTI GATC 5 cut(s) 152, 396, 483, 562, 639
BstMBI GATC 5 cut(s) 149, 393, 480, 559, 636
BstMWI GCNNNNNNNGC 2 cut(s) 500, 743
BstNSI RCATGY 2 cut(s) 276, 363
BstPI GGTNACC 2 cut(s) 76, 865
BstSCI CCNGG 5 cut(s) 172, 173, 443, 489, 874
BstUI CGCG 1 cut(s) 8
BstV1I GCAGC 2 cut(s) 530, 533
BstV2I GAAGAC 1 cut(s) 507
BsuRI GGCC 3 cut(s) 5, 28, 345
BtgZI GCGATG 1 cut(s) 247
BtsIMutI CAGTG 2 cut(s) 639, 907
Cac8I GCNNGC 1 cut(s) 119
CfoI GCGC 1 cut(s) 10
Cfr13I GGNCC 3 cut(s) 26, 487, 872
Cfr9I CCCGGG 1 cut(s) 173
Csp6I GTAC 1 cut(s) 839
CviAII CATG 3 cut(s) 273, 360, 473
CviQI GTAC 1 cut(s) 839
DdeI CTNAG 2 cut(s) 497, 605
DpnI GATC 5 cut(s) 151, 395, 482, 561, 638
DpnII GATC 5 cut(s) 149, 393, 480, 559, 636
DrdI GACNNNNNNGTC 1 cut(s) 296
DseDI GACNNNNNNGTC 1 cut(s) 296
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 164, 533
EarI CTCTTC 2 cut(s) 164, 533
Eco130I CCWWGG 1 cut(s) 381
Eco47I GGWCC 2 cut(s) 487, 872
Eco57I CTGAAG 1 cut(s) 641
Eco88I CYCGRG 2 cut(s) 173, 254
Eco91I GGTNACC 2 cut(s) 76, 865
EcoNI CCTNNNNNAGG 1 cut(s) 71
EcoO109I RGGNCCY 1 cut(s) 487
EcoO65I GGTNACC 2 cut(s) 76, 865
EcoRI GAATTC 1 cut(s) 436
EcoT14I CCWWGG 1 cut(s) 381
ErhI CCWWGG 1 cut(s) 381
FaeI CATG 3 cut(s) 276, 363, 476
FaiI YATR 7 cut(s) 124, 143, 191, 274, 361, 474, 734
FaqI GGGAC 5 cut(s) 261, 354, 413, 483, 500
FatI CATG 3 cut(s) 272, 359, 472
FblI GTMKAC 1 cut(s) 590
Fnu4HI GCNGC 3 cut(s) 6, 544, 547
Fsp4HI GCNGC 3 cut(s) 6, 544, 547
FspBI CTAG 1 cut(s) 86
GlaI GCGC 1 cut(s) 9
GluI GCNGC 3 cut(s) 6, 544, 547
GsaI CCCAGC 1 cut(s) 235
HaeIII GGCC 3 cut(s) 5, 28, 345
HapII CCGG 6 cut(s) 174, 417, 445, 491, 870, 876
HhaI GCGC 1 cut(s) 10
Hin1II CATG 3 cut(s) 276, 363, 476
Hin6I GCGC 1 cut(s) 8
HinP1I GCGC 1 cut(s) 8
HinfI GANTC 1 cut(s) 245
HpaII CCGG 6 cut(s) 174, 417, 445, 491, 870, 876
HphI GGTGA 4 cut(s) 88, 229, 306, 877
Hpy166II GTNNAC 1 cut(s) 591
Hpy188I TCNGA 5 cut(s) 46, 109, 250, 500, 796
Hpy188III TCNNGA 2 cut(s) 205, 607
Hpy8I GTNNAC 1 cut(s) 591
HpyAV CCTTC 4 cut(s) 131, 317, 649, 854
HpyCH4III ACNGT 2 cut(s) 526, 805
HpyCH4V TGCA 4 cut(s) 549, 825, 835, 887
HpyF10VI GCNNNNNNNGC 2 cut(s) 500, 743
HpyF3I CTNAG 2 cut(s) 497, 605
Hsp92II CATG 3 cut(s) 276, 363, 476
HspAI GCGC 1 cut(s) 8
KflI GGGWCCC 1 cut(s) 487
Kzo9I GATC 5 cut(s) 149, 393, 480, 559, 636
LguI GCTCTTC 1 cut(s) 533
LmnI GCTCC 4 cut(s) 110, 427, 675, 685
Lsp1109I GCAGC 2 cut(s) 530, 533
MaeI CTAG 1 cut(s) 86
MaeIII GTNAC 3 cut(s) 76, 553, 865
MalI GATC 5 cut(s) 151, 395, 482, 561, 638
MboI GATC 5 cut(s) 149, 393, 480, 559, 636
MboII GAAGA 7 cut(s) 59, 151, 332, 507, 550, 634, 676
MhlI GDGCHC 1 cut(s) 107
MluCI AATT 9 cut(s) 30, 208, 218, 374, 436, 464, 611, 764, 770
MlyI GAGTC 1 cut(s) 239
MmeI TCCRAC 2 cut(s) 273, 706
MnlI CCTC 7 cut(s) 103, 192, 263, 280, 604, 676, 722
MroXI GAANNNNTTC 1 cut(s) 200
MseI TTAA 5 cut(s) 62, 69, 128, 759, 848
MslI CAYNNNNRTG 1 cut(s) 364
MspI CCGG 6 cut(s) 174, 417, 445, 491, 870, 876
MspR9I CCNGG 5 cut(s) 174, 175, 445, 491, 876
Mva1269I GAATGC 3 cut(s) 418, 781, 879
MvnI CGCG 1 cut(s) 8
MwoI GCNNNNNNNGC 2 cut(s) 500, 743
NciI CCSGG 5 cut(s) 174, 175, 445, 491, 876
NdeII GATC 5 cut(s) 149, 393, 480, 559, 636
NlaIII CATG 3 cut(s) 276, 363, 476
NlaIV GGNNCC 4 cut(s) 203, 488, 489, 874
NmuCI GTSAC 2 cut(s) 76, 865
NspI RCATGY 2 cut(s) 276, 363
NspV TTCGAA 1 cut(s) 751
PaeR7I CTCGAG 1 cut(s) 254
PciI ACATGT 1 cut(s) 272
PciSI GCTCTTC 1 cut(s) 533
PctI GAATGC 3 cut(s) 418, 781, 879
PdmI GAANNNNTTC 1 cut(s) 200
PflFI GACNNNGTC 1 cut(s) 694
PkrI GCNGC 3 cut(s) 7, 545, 548
PleI GAGTC 1 cut(s) 239
PpsI GAGTC 1 cut(s) 239
PpuMI RGGWCCY 1 cut(s) 487
PscI ACATGT 1 cut(s) 272
Psp5II RGGWCCY 1 cut(s) 487
PspEI GGTNACC 2 cut(s) 76, 865
PspFI CCCAGC 1 cut(s) 231
PspN4I GGNNCC 4 cut(s) 203, 488, 489, 874
PspPI GGNCC 3 cut(s) 26, 487, 872
PspPPI RGGWCCY 1 cut(s) 487
PspXI VCTCGAGB 1 cut(s) 254
PsyI GACNNNGTC 1 cut(s) 694
RsaI GTAC 1 cut(s) 840
RsaNI GTAC 1 cut(s) 839
RseI CAYNNNNRTG 1 cut(s) 364
SapI GCTCTTC 1 cut(s) 533
SaqAI TTAA 5 cut(s) 62, 69, 128, 759, 848
SatI GCNGC 3 cut(s) 6, 544, 547
Sau3AI GATC 5 cut(s) 149, 393, 480, 559, 636
Sau96I GGNCC 3 cut(s) 26, 487, 872
ScaI AGTACT 1 cut(s) 840
SchI GAGTC 1 cut(s) 239
ScrFI CCNGG 5 cut(s) 174, 175, 445, 491, 876
SduI GDGCHC 1 cut(s) 107
Sfr274I CTCGAG 1 cut(s) 254
SfuI TTCGAA 1 cut(s) 751
SinI GGWCC 2 cut(s) 487, 872
SlaI CTCGAG 1 cut(s) 254
SmaI CCCGGG 1 cut(s) 175
SmiMI CAYNNNNRTG 1 cut(s) 364
SmlI CTYRAG 2 cut(s) 254, 530
SmoI CTYRAG 2 cut(s) 254, 530
Sse9I AATT 9 cut(s) 30, 208, 218, 374, 436, 464, 611, 764, 770
SsiI CCGC 3 cut(s) 6, 673, 852
SspMI CTAG 1 cut(s) 86
StyD4I CCNGG 5 cut(s) 172, 173, 443, 489, 874
StyI CCWWGG 1 cut(s) 381
TaaI ACNGT 2 cut(s) 526, 805
TaqI TCGA 7 cut(s) 135, 255, 285, 337, 518, 596, 751
TaqII GACCGA 1 cut(s) 95
TasI AATT 9 cut(s) 30, 208, 218, 374, 436, 464, 611, 764, 770
TatI WGTACW 1 cut(s) 838
TauI GCSGC 1 cut(s) 8
Tru1I TTAA 5 cut(s) 62, 69, 128, 759, 848
Tru9I TTAA 5 cut(s) 62, 69, 128, 759, 848
TscAI CASTG 2 cut(s) 646, 907
TseFI GTSAC 2 cut(s) 76, 865
TseI GCWGC 2 cut(s) 543, 546
Tsp45I GTSAC 2 cut(s) 76, 865
TspDTI ATGAA 1 cut(s) 250
TspGWI ACGGA 1 cut(s) 579
TspMI CCCGGG 1 cut(s) 173
TspRI CASTG 2 cut(s) 646, 907
Tth111I GACNNNGTC 1 cut(s) 694
VpaK11BI GGWCC 2 cut(s) 487, 872
XagI CCTNNNNNAGG 1 cut(s) 71
XapI RAATTY 2 cut(s) 208, 436
XceI RCATGY 2 cut(s) 276, 363
XhoI CTCGAG 1 cut(s) 254
XmaI CCCGGG 1 cut(s) 173
XmiI GTMKAC 1 cut(s) 590
XmnI GAANNNNTTC 1 cut(s) 200
XspI CTAG 1 cut(s) 86
ZrmI AGTACT 1 cut(s) 840
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.