Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001041

Physical Location & Seq

Genomic Coordinates Forward (+)

6861037 .. 6862709

Gene Structure 1673 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g12190.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGTCACGCTTGCTCAGAATTGCCACAACTTGGAGAGACTTGATATAAGGGGTTGTGAAAAGGTAACTGTAGCTGGCATTTGTGCATTTTGCTGTCATAAGTGCTTGAAATGCCTTGTATTGGACAAGTTTAAGATCAATCTTTCTGATGTGGAGCGGATAGTGTTTGGATGCCCGTCCTTGAAATCTGTTGTGGTGGATTACCGCATGAGGCTTGATCCAACTTGGAGCATTGAATTGATGCACGAGAAAACTAGAAAAGTTGTTAAGTTTGTAGAAGATTGTTGTCTTGATGATATCTACGACGATTTACTTGGCCTAGTGATTAACAAGGTCAAGGACAAACGAGACAGAAAATCGTTTTCCGAGGTGATGCTGGTGTTTTTGAACCCAAAAGGTGTATGTGCTTTGGGAGAAGGGTGTCCCAGATTGTCCCATGTTCATATTATGGGGCTAAATGCAATAGGGAATTCTGGAGTTGTTGAGCTTGTACATTCAGCACGTAAGTTGAAGTCCCTGATTTTGATAAACACTAAGTTGATATCAGATGGAGCCCTCAGTGGAATTGGGTCTACATCTTCTATTAGCATTTTAGAGTTGATAAATTGTTGTAACATTACCGATGAGGGATTGGCTTCTTTGGCGAATGGATCTATCTCGAAAACCCTCAAAAAATTAATCATTGCAGGCCCTATAAGGAGTAAATTCTGTAAAATCACTGATACCGGGATCAAGATTTTGTGCAAAATGTGTTGCCTGGAGTACCTGAAATTGTCCTTTTGGGGGACAACAAGTCGAATCACTGATATTGGAGGTGTGGGAATCGCTGCCATTCAAACCCTCAAGGACTTGACATTGAATTTTCTCGACGTGTCAGACCTTACCATGGTCACGCTTGCTCAAAATTGCCGCAACTTGGAGATACTCGATATAAGGGGTTGCCAAAAGGTGACTGGAGCTGGCATTTGTGCATTTTGCAGTCACAAGTGCTTGAAGAGCCTTAATTTGGACTATTTAATGATCAATCTTTCTGATGTGGAACAGATAGTGTTTGGATGCCCGTCATTGGATTCTGTTTTGGTGGACTCACGCAGGAGGCGTGATCCAACTTGGAACGATGAATTAATGCAAAACAAAACTAGAAAAGTTGTTAAATTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_6

Protein Analysis

388

Amino Acids

42.83

Weight (kDa)

8.66

Isoelectric Point (pI)

24.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7885	PF25372	128 - 270	1.5e-08	Leucine Rich Repeat Domain of unknown function (DUF7885)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001041)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40700 FvH4_5g10370 FvH4_5g12160 FvH4_5g12180 FvH4_5g12190 FvH4_5g12200 FvH4_5g12210 FvH4_5g12211
rosa_chinensis	RchiOBHm_Chr5g0073461 RchiOBHm_Chr5g0073471 RchiOBHm_Chr7g0185341 RchiOBHm_Chr7g0185381 RchiOBHm_Chr7g0185401
rosa_laevigata	RLG00000004916 RLG00000004917 RLG00000004921 RLG00000019401 RLG00000036387
rosa_multiflora	Rmu_co8366929.1_g000001 Rmu_co8392105.1_g000001 Rmu_sc0001761.1_g000011 Rmu_sc0001761.1_g000012 Rmu_sc0001761.1_g000013 Rmu_sc0001761.1_g000016 Rmu_sc0004670.1_g000010 Rmu_sc0008496.1_g000005 Rmu_sc0023242.1_g000005 Rmu_sc0023242.1_g000006 Rmu_ssc0000226.1_g000026 Rmu_ssc0000226.1_g000027
rosa_roxburghii	Rroxscaffold_1G00007790 Rroxscaffold_1G00017220 Rroxscaffold_2G00110040 Rroxscaffold_3G00269000 Rroxscaffold_3G00269010
rosa_rugosa	Rorug05G0423700 Rorug06G0468100 Rorug06G0468700
rosa_samantha	Rh2CG354600 Rh2CG354700 Rh2DG393800 Rh5AG481000 Rh5CG455400 Rh5CG524900 Rh5DG514100 Rh7AG074000 Rh7AG074100 Rh7AG074200 Rh7AG074600 Rh7BG072600 Rh7BG073200 Rh7BG073300 Rh7BG073400 Rh7DG073200 Rh7DG073600 Rh7DG073700 Rh7DG073800
rosa_wichuraiana	Rw2G030200 Rw7G006080 Rw7G006120 Rw7G006130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	31
AccBSI	CCGCTC	1 cut(s)	157
AccI	GTMKAC	1 cut(s)	572
AciI	CCGC	3 cut(s)	157, 205, 910
AclWI	GGATC	4 cut(s)	212, 658, 737, 1097
AcsI	RAATTY	4 cut(s)	469, 704, 859, 1154
AfaI	GTAC	2 cut(s)	492, 764
AfiI	CCNNNNNNNGG	7 cut(s)	31, 121, 783, 886, 916, 1006, 1066
AflIII	ACRYGT	1 cut(s)	870
AgsI	TTSAA	8 cut(s)	109, 184, 236, 388, 511, 836, 859, 994
AhdI	GACNNNNNGTC	1 cut(s)	792
AjiI	CACGTC	1 cut(s)	871
AjnI	CCWGG	1 cut(s)	756
AluBI	AGCT	3 cut(s)	74, 487, 959
AluI	AGCT	3 cut(s)	74, 487, 959
Alw26I	GTCTC	2 cut(s)	31, 342
AlwI	GGATC	4 cut(s)	212, 658, 737, 1097
AoxI	GGCC	2 cut(s)	316, 688
ApeKI	GCWGC	1 cut(s)	827
ApoI	RAATTY	4 cut(s)	469, 704, 859, 1154
AseI	ATTAAT	2 cut(s)	677, 1124
AspS9I	GGNCC	1 cut(s)	689
AsuC2I	CCSGG	1 cut(s)	727
AsuHPI	GGTGA	2 cut(s)	382, 961
BanII	GRGCYC	1 cut(s)	556
BauI	CACGAG	1 cut(s)	245
BbvI	GCAGC	1 cut(s)	814
BccI	CCATC	1 cut(s)	542
BciT130I	CCWGG	1 cut(s)	758
BclI	TGATCA	1 cut(s)	1020
BcnI	CCSGG	1 cut(s)	727
BcoDI	GTCTC	2 cut(s)	31, 342
BfaI	CTAG	3 cut(s)	255, 320, 1140
BfmI	CTRYAG	1 cut(s)	69
BisI	GCNGC	2 cut(s)	828, 910
BlsI	GCNGC	2 cut(s)	829, 911
Bme1390I	CCNGG	2 cut(s)	727, 758
BmeRI	GACNNNNNGTC	1 cut(s)	792
BmgBI	CACGTC	1 cut(s)	871
BmgT120I	GGNCC	1 cut(s)	689
BmiI	GGNNCC	1 cut(s)	553
BmrFI	CCNGG	2 cut(s)	727, 758
BmsI	GCATC	4 cut(s)	161, 231, 363, 1046
BpmI	CTGGAG	3 cut(s)	495, 779, 975
BpuEI	CTTGAG	1 cut(s)	827
BpuMI	CCSGG	1 cut(s)	727
BsaAI	YACGTR	1 cut(s)	503
BsaJI	CCNNGG	2 cut(s)	366, 885
Bsc4I	CCNNNNNNNGG	7 cut(s)	31, 121, 783, 886, 916, 1006, 1066
Bse1I	ACTGG	1 cut(s)	958
Bse3DI	GCAATG	1 cut(s)	681
BseBI	CCWGG	1 cut(s)	758
BseDI	CCNNGG	2 cut(s)	366, 885
BseGI	GGATG	2 cut(s)	176, 1061
BseLI	CCNNNNNNNGG	7 cut(s)	31, 121, 783, 886, 916, 1006, 1066
BseMI	GCAATG	1 cut(s)	681
BseMII	CTCAG	2 cut(s)	29, 571
BseNI	ACTGG	1 cut(s)	958
BseXI	GCAGC	1 cut(s)	814
BshFI	GGCC	2 cut(s)	318, 690
BsiSI	CCGG	1 cut(s)	726
BslFI	GGGAC	4 cut(s)	408, 418, 499, 799
BslI	CCNNNNNNNGG	7 cut(s)	31, 121, 783, 886, 916, 1006, 1066
BsmAI	GTCTC	2 cut(s)	31, 342
BsmFI	GGGAC	4 cut(s)	408, 418, 499, 799
BsnI	GGCC	2 cut(s)	318, 690
Bsp1286I	GDGCHC	1 cut(s)	556
Bsp1407I	TGTACA	1 cut(s)	490
Bsp143I	GATC	6 cut(s)	135, 217, 650, 729, 1020, 1102
Bsp19I	CCATGG	1 cut(s)	885
BspACI	CCGC	3 cut(s)	157, 205, 910
BspANI	GGCC	2 cut(s)	318, 690
BspCNI	CTCAG	2 cut(s)	28, 570
BspLI	GGNNCC	1 cut(s)	553
BspPI	GGATC	4 cut(s)	212, 658, 737, 1097
BspQI	GCTCTTC	1 cut(s)	989
BsrBI	CCGCTC	1 cut(s)	157
BsrDI	GCAATG	1 cut(s)	681
BsrGI	TGTACA	1 cut(s)	490
BsrI	ACTGG	1 cut(s)	958
BssECI	CCNNGG	2 cut(s)	366, 885
BssMI	GATC	6 cut(s)	135, 217, 650, 729, 1020, 1102
BssSI	CACGAG	1 cut(s)	245
BssT1I	CCWWGG	1 cut(s)	885
Bst2BI	CACGAG	1 cut(s)	245
Bst2UI	CCWGG	1 cut(s)	758
Bst4CI	ACNGT	1 cut(s)	70
Bst6I	CTCTTC	1 cut(s)	989
BstAUI	TGTACA	1 cut(s)	490
BstBAI	YACGTR	1 cut(s)	503
BstC8I	GCNNGC	5 cut(s)	12, 76, 688, 897, 961
BstDEI	CTNAG	3 cut(s)	15, 534, 557
BstDSI	CCRYGG	1 cut(s)	885
BstF5I	GGATG	2 cut(s)	176, 1061
BstKTI	GATC	6 cut(s)	138, 220, 653, 732, 1023, 1105
BstMAI	GTCTC	2 cut(s)	31, 342
BstMBI	GATC	6 cut(s)	135, 217, 650, 729, 1020, 1102
BstMWI	GCNNNNNNNGC	3 cut(s)	111, 641, 996
BstNI	CCWGG	1 cut(s)	758
BstSCI	CCNGG	2 cut(s)	725, 756
BstSFI	CTRYAG	1 cut(s)	69
BstV1I	GCAGC	1 cut(s)	814
BstX2I	RGATCY	1 cut(s)	650
BstYI	RGATCY	1 cut(s)	650
BsuRI	GGCC	2 cut(s)	318, 690
BtgI	CCRYGG	1 cut(s)	885
BtrI	CACGTC	1 cut(s)	871
BtsCI	GGATG	2 cut(s)	176, 1061
BtsIMutI	CAGTG	3 cut(s)	565, 717, 801
Cac8I	GCNNGC	5 cut(s)	12, 76, 688, 897, 961
Cfr13I	GGNCC	1 cut(s)	689
Csp6I	GTAC	2 cut(s)	491, 763
CviAII	CATG	3 cut(s)	208, 437, 886
CviQI	GTAC	2 cut(s)	491, 763
DdeI	CTNAG	3 cut(s)	15, 534, 557
DpnI	GATC	6 cut(s)	137, 219, 652, 731, 1022, 1104
DpnII	GATC	6 cut(s)	135, 217, 650, 729, 1020, 1102
DriI	GACNNNNNGTC	1 cut(s)	792
Eam1104I	CTCTTC	1 cut(s)	989
Eam1105I	GACNNNNNGTC	1 cut(s)	792
EarI	CTCTTC	1 cut(s)	989
Eco130I	CCWWGG	1 cut(s)	885
Eco24I	GRGCYC	1 cut(s)	556
Eco32I	GATATC	2 cut(s)	298, 543
EcoO109I	RGGNCCY	1 cut(s)	689
EcoRI	GAATTC	1 cut(s)	469
EcoRII	CCWGG	1 cut(s)	756
EcoRV	GATATC	2 cut(s)	298, 543
EcoT14I	CCWWGG	1 cut(s)	885
EcoT38I	GRGCYC	1 cut(s)	556
ErhI	CCWWGG	1 cut(s)	885
FaeI	CATG	3 cut(s)	211, 440, 889
FaqI	GGGAC	4 cut(s)	408, 418, 499, 799
FatI	CATG	3 cut(s)	207, 436, 885
FbaI	TGATCA	1 cut(s)	1020
FblI	GTMKAC	1 cut(s)	572
Fnu4HI	GCNGC	2 cut(s)	828, 910
FokI	GGATG	2 cut(s)	183, 1068
FriOI	GRGCYC	1 cut(s)	556
Fsp4HI	GCNGC	2 cut(s)	828, 910
FspBI	CTAG	3 cut(s)	255, 320, 1140
GluI	GCNGC	2 cut(s)	828, 910
GsuI	CTGGAG	3 cut(s)	495, 779, 975
HaeIII	GGCC	2 cut(s)	318, 690
HapII	CCGG	1 cut(s)	726
Hin1II	CATG	3 cut(s)	211, 440, 889
HinfI	GANTC	4 cut(s)	798, 822, 1070, 1085
HpaII	CCGG	1 cut(s)	726
HphI	GGTGA	2 cut(s)	382, 961
Hpy166II	GTNNAC	2 cut(s)	573, 1084
Hpy188I	TCNGA	6 cut(s)	18, 148, 367, 547, 877, 1033
Hpy188III	TCNNGA	5 cut(s)	290, 474, 658, 733, 866
Hpy8I	GTNNAC	2 cut(s)	573, 1084
Hpy99I	CGWCG	2 cut(s)	308, 872
HpyAV	CCTTC	1 cut(s)	410
HpyCH4III	ACNGT	1 cut(s)	70
HpyCH4IV	ACGT	2 cut(s)	502, 870
HpyCH4V	TGCA	8 cut(s)	86, 244, 461, 686, 744, 971, 978, 1129
HpyF10VI	GCNNNNNNNGC	3 cut(s)	111, 641, 996
HpyF3I	CTNAG	3 cut(s)	15, 534, 557
HpySE526I	ACGT	2 cut(s)	502, 870
Hsp92II	CATG	3 cut(s)	211, 440, 889
Ksp22I	TGATCA	1 cut(s)	1020
Kzo9I	GATC	6 cut(s)	135, 217, 650, 729, 1020, 1102
LguI	GCTCTTC	1 cut(s)	989
LmnI	GCTCC	4 cut(s)	154, 228, 551, 956
Lsp1109I	GCAGC	1 cut(s)	814
LweI	GCATC	4 cut(s)	161, 231, 363, 1046
MaeI	CTAG	3 cut(s)	255, 320, 1140
MaeII	ACGT	2 cut(s)	502, 870
MaeIII	GTNAC	6 cut(s)	4, 64, 611, 889, 949, 980
MalI	GATC	6 cut(s)	137, 219, 652, 731, 1022, 1104
MbiI	CCGCTC	1 cut(s)	157
MboI	GATC	6 cut(s)	135, 217, 650, 729, 1020, 1102
MboII	GAAGA	3 cut(s)	290, 570, 1006
MflI	RGATCY	1 cut(s)	650
MhlI	GDGCHC	1 cut(s)	556
MlyI	GAGTC	1 cut(s)	1079
MmeI	TCCRAC	2 cut(s)	245, 1130
MnlI	CCTC	8 cut(s)	204, 361, 566, 619, 677, 806, 851, 1089
MseI	TTAA	8 cut(s)	132, 267, 327, 677, 1002, 1016, 1124, 1152
MspI	CCGG	1 cut(s)	726
MspR9I	CCNGG	2 cut(s)	727, 758
MvaI	CCWGG	1 cut(s)	758
MwoI	GCNNNNNNNGC	3 cut(s)	111, 641, 996
NciI	CCSGG	1 cut(s)	727
NcoI	CCATGG	1 cut(s)	885
NdeII	GATC	6 cut(s)	135, 217, 650, 729, 1020, 1102
NlaIII	CATG	3 cut(s)	211, 440, 889
NlaIV	GGNNCC	1 cut(s)	553
NmuCI	GTSAC	4 cut(s)	4, 889, 949, 980
PciSI	GCTCTTC	1 cut(s)	989
PcsI	WCGNNNNNNNCGW	1 cut(s)	1096
PfeI	GAWTC	3 cut(s)	798, 822, 1070
PflMI	CCANNNNNTGG	1 cut(s)	31
PkrI	GCNGC	2 cut(s)	829, 911
PleI	GAGTC	1 cut(s)	1079
PpsI	GAGTC	1 cut(s)	1079
Ppu21I	YACGTR	1 cut(s)	503
PshBI	ATTAAT	2 cut(s)	677, 1124
Psp6I	CCWGG	1 cut(s)	756
PspGI	CCWGG	1 cut(s)	756
PspN4I	GGNNCC	1 cut(s)	553
PspPI	GGNCC	1 cut(s)	689
PsuI	RGATCY	1 cut(s)	650
RsaI	GTAC	2 cut(s)	492, 764
RsaNI	GTAC	2 cut(s)	491, 763
SapI	GCTCTTC	1 cut(s)	989
SaqAI	TTAA	8 cut(s)	132, 267, 327, 677, 1002, 1016, 1124, 1152
SatI	GCNGC	2 cut(s)	828, 910
Sau3AI	GATC	6 cut(s)	135, 217, 650, 729, 1020, 1102
Sau96I	GGNCC	1 cut(s)	689
SchI	GAGTC	1 cut(s)	1079
ScrFI	CCNGG	2 cut(s)	727, 758
SduI	GDGCHC	1 cut(s)	556
SfaNI	GCATC	4 cut(s)	161, 231, 363, 1046
SfcI	CTRYAG	1 cut(s)	69
SmlI	CTYRAG	1 cut(s)	842
SmoI	CTYRAG	1 cut(s)	842
SsiI	CCGC	3 cut(s)	157, 205, 910
SspMI	CTAG	3 cut(s)	255, 320, 1140
StyD4I	CCNGG	2 cut(s)	725, 756
StyI	CCWWGG	1 cut(s)	885
TaaI	ACNGT	1 cut(s)	70
TaiI	ACGT	2 cut(s)	505, 873
TaqI	TCGA	4 cut(s)	659, 796, 867, 927
TatI	WGTACW	1 cut(s)	490
TauI	GCSGC	1 cut(s)	912
TfiI	GAWTC	3 cut(s)	798, 822, 1070
Tru1I	TTAA	8 cut(s)	132, 267, 327, 677, 1002, 1016, 1124, 1152
Tru9I	TTAA	8 cut(s)	132, 267, 327, 677, 1002, 1016, 1124, 1152
TscAI	CASTG	3 cut(s)	565, 724, 808
TseFI	GTSAC	4 cut(s)	4, 889, 949, 980
TseI	GCWGC	1 cut(s)	827
Tsp45I	GTSAC	4 cut(s)	4, 889, 949, 980
TspDTI	ATGAA	2 cut(s)	431, 1134
TspRI	CASTG	3 cut(s)	565, 724, 808
Van91I	CCANNNNNTGG	1 cut(s)	31
VspI	ATTAAT	2 cut(s)	677, 1124
XapI	RAATTY	4 cut(s)	469, 704, 859, 1154
XcmI	CCANNNNNNNNNTGG	1 cut(s)	950
XmiI	GTMKAC	1 cut(s)	572
XspI	CTAG	3 cut(s)	255, 320, 1140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.