Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001041

Physical Location & Seq

Genomic Coordinates Forward (+)

5304178 .. 5304912

Gene Structure 735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG074200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGATGAGTAGTTCAGGCCCCTTCATTTCCGGCGTCGAAGATCCGCAGTCGTTAACAAGGTCAAGGACAAACAAGATAGAAAATCGTTTTCCCAGGTCTGCAAGCAATGGCTTAAAGTCCAAGGTCCTGGTTTTGATTAACAGCTCTATATCGGACGAAGCCCTCAGAGTAATTGGCTCCACATCTTCCATCAGCATTTTAAAGTTAAGACGTTGTTATAACGTTACTGATGAGGGATTGGCTTTTTTGGCGAATGGATCTACCTCGAAAACCCTCAAGAAATTGGTCCTTGCGAGGTGCCCTCTTATCACTGATACAGGGGTCAAGCTTTTGGGCAAAATGTGTAGCTTGGAGCACCTGAAATTGTCTTATGAGGGAGAAGTCAGTCAAATCACTGATATTGGAGGTGTGGGAATTTCTGCAATTCGAACCCTCAGGGAATTGATATTGAATTATGTGAACCTGTCGGACCCTACCATGGCCGCTCTTGCACAGAATTGCCGCAACTTGGAAATGCTTGATTTAGGGGGTTGTGAAAGGGTAACCGGAGCTGGCATTCGTGCGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_6

Protein Analysis

189

Amino Acids

20.35

Weight (kDa)

9.22

Isoelectric Point (pI)

32.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7885	PF25372	35 - 116	2.9e-07	Leucine Rich Repeat Domain of unknown function (DUF7885)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001041)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40700 FvH4_5g10370 FvH4_5g12160 FvH4_5g12180 FvH4_5g12190 FvH4_5g12200 FvH4_5g12210 FvH4_5g12211
rosa_chinensis	RchiOBHm_Chr5g0073461 RchiOBHm_Chr5g0073471 RchiOBHm_Chr7g0185341 RchiOBHm_Chr7g0185381 RchiOBHm_Chr7g0185401
rosa_laevigata	RLG00000004916 RLG00000004917 RLG00000004921 RLG00000019401 RLG00000036387
rosa_multiflora	Rmu_co8366929.1_g000001 Rmu_co8392105.1_g000001 Rmu_sc0001761.1_g000011 Rmu_sc0001761.1_g000012 Rmu_sc0001761.1_g000013 Rmu_sc0001761.1_g000016 Rmu_sc0004670.1_g000010 Rmu_sc0008496.1_g000005 Rmu_sc0023242.1_g000005 Rmu_sc0023242.1_g000006 Rmu_ssc0000226.1_g000026 Rmu_ssc0000226.1_g000027
rosa_roxburghii	Rroxscaffold_1G00007790 Rroxscaffold_1G00017220 Rroxscaffold_2G00110040 Rroxscaffold_3G00269000 Rroxscaffold_3G00269010
rosa_rugosa	Rorug05G0423700 Rorug06G0468100 Rorug06G0468700
rosa_samantha	Rh2CG354600 Rh2CG354700 Rh2DG393800 Rh5AG481000 Rh5CG455400 Rh5CG524900 Rh5DG514100 Rh7AG074000 Rh7AG074100 Rh7AG074200 Rh7AG074600 Rh7BG072600 Rh7BG073200 Rh7BG073300 Rh7BG073400 Rh7DG073200 Rh7DG073600 Rh7DG073700 Rh7DG073800
rosa_wichuraiana	Rw2G030200 Rw7G006080 Rw7G006120 Rw7G006130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	219
AccB1I	GGYRCC	1 cut(s)	297
AccBSI	CCGCTC	1 cut(s)	485
AciI	CCGC	3 cut(s)	44, 483, 502
AclI	AACGTT	1 cut(s)	222
AclWI	GGATC	2 cut(s)	35, 265
AcoI	YGGCCR	1 cut(s)	480
AcsI	RAATTY	1 cut(s)	414
AcyI	GRCGYC	1 cut(s)	33
AfiI	CCNNNNNNNGG	2 cut(s)	478, 508
AgsI	TTSAA	1 cut(s)	451
AjnI	CCWGG	2 cut(s)	92, 126
AluBI	AGCT	4 cut(s)	144, 328, 348, 551
AluI	AGCT	4 cut(s)	144, 328, 348, 551
Alw21I	GWGCWC	1 cut(s)	357
AlwI	GGATC	2 cut(s)	35, 265
AoxI	GGCC	2 cut(s)	16, 480
ApoI	RAATTY	1 cut(s)	414
AspS9I	GGNCC	4 cut(s)	17, 124, 286, 469
AsuII	TTCGAA	1 cut(s)	427
AvaII	GGWCC	3 cut(s)	124, 286, 469
AxyI	CCTNAGG	1 cut(s)	434
BaeGI	GKGCMC	1 cut(s)	302
BaeI	ACNNNNGTAYC	2 cut(s)	306, 339
BanI	GGYRCC	1 cut(s)	297
Bbv12I	GWGCWC	1 cut(s)	357
BccI	CCATC	1 cut(s)	197
BciT130I	CCWGG	2 cut(s)	94, 128
BisI	GCNGC	2 cut(s)	483, 502
BlsI	GCNGC	2 cut(s)	484, 503
Bme1390I	CCNGG	2 cut(s)	94, 128
Bme18I	GGWCC	3 cut(s)	124, 286, 469
BmgT120I	GGNCC	4 cut(s)	17, 124, 286, 469
BmiI	GGNNCC	4 cut(s)	19, 178, 299, 471
BmrFI	CCNGG	2 cut(s)	94, 128
BplI	GAGNNNNNCTC	2 cut(s)	286, 318
Bpu14I	TTCGAA	1 cut(s)	427
BpuEI	CTTGAG	1 cut(s)	260
BsaHI	GRCGYC	1 cut(s)	33
BsaJI	CCNNGG	3 cut(s)	92, 120, 477
BsaWI	WCCGGW	1 cut(s)	545
Bsc4I	CCNNNNNNNGG	2 cut(s)	478, 508
Bse21I	CCTNAGG	1 cut(s)	434
Bse3DI	GCAATG	1 cut(s)	112
BseBI	CCWGG	2 cut(s)	94, 128
BseDI	CCNNGG	3 cut(s)	92, 120, 477
BseLI	CCNNNNNNNGG	2 cut(s)	478, 508
BseMI	GCAATG	1 cut(s)	112
BseMII	CTCAG	2 cut(s)	178, 448
BseSI	GKGCMC	1 cut(s)	302
BshFI	GGCC	2 cut(s)	18, 482
BshNI	GGYRCC	1 cut(s)	297
BsiHKAI	GWGCWC	1 cut(s)	357
BsiSI	CCGG	2 cut(s)	30, 546
BslI	CCNNNNNNNGG	2 cut(s)	478, 508
BsmI	GAATGC	1 cut(s)	555
BsnI	GGCC	2 cut(s)	18, 482
Bsp119I	TTCGAA	1 cut(s)	427
Bsp1286I	GDGCHC	2 cut(s)	302, 357
Bsp143I	GATC	2 cut(s)	40, 257
Bsp19I	CCATGG	1 cut(s)	477
BspACI	CCGC	3 cut(s)	44, 483, 502
BspANI	GGCC	2 cut(s)	18, 482
BspCNI	CTCAG	2 cut(s)	177, 447
BspLI	GGNNCC	4 cut(s)	19, 178, 299, 471
BspPI	GGATC	2 cut(s)	35, 265
BspT104I	TTCGAA	1 cut(s)	427
BspT107I	GGYRCC	1 cut(s)	297
BsrBI	CCGCTC	1 cut(s)	485
BsrDI	GCAATG	1 cut(s)	112
BssECI	CCNNGG	3 cut(s)	92, 120, 477
BssMI	GATC	2 cut(s)	40, 257
BssNI	GRCGYC	1 cut(s)	33
BssT1I	CCWWGG	2 cut(s)	120, 477
Bst2UI	CCWGG	2 cut(s)	94, 128
BstACI	GRCGYC	1 cut(s)	33
BstBI	TTCGAA	1 cut(s)	427
BstC8I	GCNNGC	2 cut(s)	103, 553
BstDEI	CTNAG	2 cut(s)	164, 434
BstDSI	CCRYGG	1 cut(s)	477
BstEII	GGTNACC	1 cut(s)	541
BstKTI	GATC	2 cut(s)	43, 260
BstMBI	GATC	2 cut(s)	40, 257
BstMWI	GCNNNNNNNGC	2 cut(s)	248, 488
BstNI	CCWGG	2 cut(s)	94, 128
BstPI	GGTNACC	1 cut(s)	541
BstSCI	CCNGG	2 cut(s)	92, 126
BstSLI	GKGCMC	1 cut(s)	302
BstX2I	RGATCY	2 cut(s)	40, 257
BstXI	CCANNNNNNTGG	1 cut(s)	127
BstYI	RGATCY	2 cut(s)	40, 257
Bsu36I	CCTNAGG	1 cut(s)	434
BsuRI	GGCC	2 cut(s)	18, 482
BtgI	CCRYGG	1 cut(s)	477
BtsIMutI	CAGTG	2 cut(s)	309, 393
Cac8I	GCNNGC	2 cut(s)	103, 553
Cfr13I	GGNCC	4 cut(s)	17, 124, 286, 469
CseI	GACGC	1 cut(s)	22
CviAII	CATG	1 cut(s)	478
DdeI	CTNAG	2 cut(s)	164, 434
DpnI	GATC	2 cut(s)	42, 259
DpnII	GATC	2 cut(s)	40, 257
DraI	TTTAAA	1 cut(s)	201
EaeI	YGGCCR	1 cut(s)	480
Eco130I	CCWWGG	2 cut(s)	120, 477
Eco47I	GGWCC	3 cut(s)	124, 286, 469
Eco81I	CCTNAGG	1 cut(s)	434
Eco91I	GGTNACC	1 cut(s)	541
EcoO109I	RGGNCCY	2 cut(s)	17, 124
EcoO65I	GGTNACC	1 cut(s)	541
EcoRII	CCWGG	2 cut(s)	92, 126
EcoT14I	CCWWGG	2 cut(s)	120, 477
ErhI	CCWWGG	2 cut(s)	120, 477
FaeI	CATG	1 cut(s)	481
FaiI	YATR	5 cut(s)	149, 219, 372, 456, 479
FatI	CATG	1 cut(s)	477
Fnu4HI	GCNGC	2 cut(s)	483, 502
Fsp4HI	GCNGC	2 cut(s)	483, 502
GluI	GCNGC	2 cut(s)	483, 502
HaeIII	GGCC	2 cut(s)	18, 482
HapII	CCGG	2 cut(s)	30, 546
HgaI	GACGC	1 cut(s)	22
Hin1I	GRCGYC	1 cut(s)	33
Hin1II	CATG	1 cut(s)	481
HincII	GTYRAC	1 cut(s)	54
HindII	GTYRAC	1 cut(s)	54
HindIII	AAGCTT	1 cut(s)	326
HpaI	GTTAAC	1 cut(s)	54
HpaII	CCGG	2 cut(s)	30, 546
Hpy166II	GTNNAC	2 cut(s)	54, 460
Hpy188I	TCNGA	3 cut(s)	154, 167, 469
Hpy188III	TCNNGA	1 cut(s)	277
Hpy8I	GTNNAC	2 cut(s)	54, 460
Hpy99I	CGWCG	1 cut(s)	38
HpyAV	CCTTC	1 cut(s)	31
HpyCH4IV	ACGT	2 cut(s)	211, 222
HpyCH4V	TGCA	3 cut(s)	101, 422, 491
HpyF10VI	GCNNNNNNNGC	2 cut(s)	248, 488
HpyF3I	CTNAG	2 cut(s)	164, 434
HpySE526I	ACGT	2 cut(s)	211, 222
Hsp92I	GRCGYC	1 cut(s)	33
Hsp92II	CATG	1 cut(s)	481
KspAI	GTTAAC	1 cut(s)	54
Kzo9I	GATC	2 cut(s)	40, 257
LmnI	GCTCC	3 cut(s)	182, 352, 548
MaeII	ACGT	2 cut(s)	211, 222
MaeIII	GTNAC	2 cut(s)	223, 541
MalI	GATC	2 cut(s)	42, 259
MbiI	CCGCTC	1 cut(s)	485
MboI	GATC	2 cut(s)	40, 257
MboII	GAAGA	2 cut(s)	50, 177
MflI	RGATCY	2 cut(s)	40, 257
MhlI	GDGCHC	2 cut(s)	302, 357
MluCI	AATT	8 cut(s)	171, 281, 362, 414, 423, 440, 451, 496
MmeI	TCCRAC	1 cut(s)	447
MnlI	CCTC	9 cut(s)	173, 226, 274, 284, 288, 312, 367, 398, 443
MseI	TTAA	5 cut(s)	53, 113, 138, 200, 206
MspI	CCGG	2 cut(s)	30, 546
MspR9I	CCNGG	2 cut(s)	94, 128
Mva1269I	GAATGC	1 cut(s)	555
MvaI	CCWGG	2 cut(s)	94, 128
MwoI	GCNNNNNNNGC	2 cut(s)	248, 488
NcoI	CCATGG	1 cut(s)	477
NdeII	GATC	2 cut(s)	40, 257
NlaIII	CATG	1 cut(s)	481
NlaIV	GGNNCC	4 cut(s)	19, 178, 299, 471
NspV	TTCGAA	1 cut(s)	427
PctI	GAATGC	1 cut(s)	555
PkrI	GCNGC	2 cut(s)	484, 503
PpuMI	RGGWCCY	1 cut(s)	124
PsiI	TTATAA	1 cut(s)	219
Psp1406I	AACGTT	1 cut(s)	222
Psp5II	RGGWCCY	1 cut(s)	124
Psp6I	CCWGG	2 cut(s)	92, 126
PspEI	GGTNACC	1 cut(s)	541
PspGI	CCWGG	2 cut(s)	92, 126
PspN4I	GGNNCC	4 cut(s)	19, 178, 299, 471
PspPI	GGNCC	4 cut(s)	17, 124, 286, 469
PspPPI	RGGWCCY	1 cut(s)	124
PsuI	RGATCY	2 cut(s)	40, 257
SaqAI	TTAA	5 cut(s)	53, 113, 138, 200, 206
SatI	GCNGC	2 cut(s)	483, 502
Sau3AI	GATC	2 cut(s)	40, 257
Sau96I	GGNCC	4 cut(s)	17, 124, 286, 469
ScrFI	CCNGG	2 cut(s)	94, 128
SduI	GDGCHC	2 cut(s)	302, 357
SfuI	TTCGAA	1 cut(s)	427
SinI	GGWCC	3 cut(s)	124, 286, 469
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
Sse9I	AATT	8 cut(s)	171, 281, 362, 414, 423, 440, 451, 496
SsiI	CCGC	3 cut(s)	44, 483, 502
StyD4I	CCNGG	2 cut(s)	92, 126
StyI	CCWWGG	2 cut(s)	120, 477
TaiI	ACGT	2 cut(s)	214, 225
TaqI	TCGA	3 cut(s)	36, 266, 427
TasI	AATT	8 cut(s)	171, 281, 362, 414, 423, 440, 451, 496
TauI	GCSGC	2 cut(s)	485, 504
Tru1I	TTAA	5 cut(s)	53, 113, 138, 200, 206
Tru9I	TTAA	5 cut(s)	53, 113, 138, 200, 206
TscAI	CASTG	2 cut(s)	316, 400
TspDTI	ATGAA	1 cut(s)	13
TspRI	CASTG	2 cut(s)	316, 400
VpaK11BI	GGWCC	3 cut(s)	124, 286, 469
XapI	RAATTY	1 cut(s)	414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.