Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000226.1

Orthogroup ID

OG0001041

Physical Location & Seq

Genomic Coordinates Forward (+)

94456 .. 95971

Gene Structure 1516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000226.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

atgcctcgatgcctcgttaggagccaccaaactcctctagaaactcctcgcccagctcattcaccgcactccgatgaggctagagacctagatcggcccgggagtggccggatcgagaacgataaagaaggcaacgaaaccctaggttgccttcattacccatctacattagaatcagggaacatgtcatttctggacgacgatgtagttggcctaattgctaccaaggtttgtgagaaagatgatagaaagtccttctccgaggtctgcaagcaatggtgtagagtagaaggtctaagccgatcatcacttgaggttttccataaccggcccggtttgccccttggtgcactaactagattcccaaatgtagtcgatttggaagtaaagtatgttagaactgaggccgaccttgaattcatagcccaaacttgtcctagactcgagagcattacggtccactccgatatccgtatagagagtgatgatattgttttggggccaaaaagtctagttgctttggggaatgggtgtccacaattgtccagagttaagcttgtggggagggaagcaataggggattcgggagttgtgccgcttgttcattcagcacggaacttgaaggctctggttttcgcatgtgattcgtggatctcagatgaagcattgagagccattgggtacgcatcttccatcagcacgttgaagttgccagggtctcgcattaaggatgtggaattgggtcataagtgtttgaaacgccttgtattgcttaacttaacctttcacaattttaatgaagctgatttggaaagcatagcccttggatgcccgtcgttggagtcagaatctgttctggtggacaatgtgattaaagtggtgcacaacaacactcgaagagtcgtcaagttcattagtatattcacgccgtccttcagattgaatattgagcagatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_6

Protein Analysis

319

Amino Acids

35.3

Weight (kDa)

6.08

Isoelectric Point (pI)

46.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001041)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40700 FvH4_5g10370 FvH4_5g12160 FvH4_5g12180 FvH4_5g12190 FvH4_5g12200 FvH4_5g12210 FvH4_5g12211
rosa_chinensis	RchiOBHm_Chr5g0073461 RchiOBHm_Chr5g0073471 RchiOBHm_Chr7g0185341 RchiOBHm_Chr7g0185381 RchiOBHm_Chr7g0185401
rosa_laevigata	RLG00000004916 RLG00000004917 RLG00000004921 RLG00000019401 RLG00000036387
rosa_multiflora	Rmu_co8366929.1_g000001 Rmu_co8392105.1_g000001 Rmu_sc0001761.1_g000011 Rmu_sc0001761.1_g000012 Rmu_sc0001761.1_g000013 Rmu_sc0001761.1_g000016 Rmu_sc0004670.1_g000010 Rmu_sc0008496.1_g000005 Rmu_sc0023242.1_g000005 Rmu_sc0023242.1_g000006 Rmu_ssc0000226.1_g000026 Rmu_ssc0000226.1_g000027
rosa_roxburghii	Rroxscaffold_1G00007790 Rroxscaffold_1G00017220 Rroxscaffold_2G00110040 Rroxscaffold_3G00269000 Rroxscaffold_3G00269010
rosa_rugosa	Rorug05G0423700 Rorug06G0468100 Rorug06G0468700
rosa_samantha	Rh2CG354600 Rh2CG354700 Rh2DG393800 Rh5AG481000 Rh5CG455400 Rh5CG524900 Rh5DG514100 Rh7AG074000 Rh7AG074100 Rh7AG074200 Rh7AG074600 Rh7BG072600 Rh7BG073200 Rh7BG073300 Rh7BG073400 Rh7DG073200 Rh7DG073600 Rh7DG073700 Rh7DG073800
rosa_wichuraiana	Rw2G030200 Rw7G006080 Rw7G006120 Rw7G006130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	65, 596
AclWI	GGATC	2 cut(s)	119, 659
AcoI	YGGCCR	1 cut(s)	106
AcsI	RAATTY	1 cut(s)	416
AcuI	CTGAAG	1 cut(s)	919
AfaI	GTAC	1 cut(s)	683
AfiI	CCNNNNNNNGG	2 cut(s)	104, 838
AflIII	ACRYGT	1 cut(s)	183
AgsI	TTSAA	5 cut(s)	416, 622, 706, 757, 943
AjnI	CCWGG	1 cut(s)	712
AluBI	AGCT	3 cut(s)	56, 556, 803
AluI	AGCT	3 cut(s)	56, 556, 803
Alw21I	GWGCWC	2 cut(s)	352, 885
Alw26I	GTCTC	2 cut(s)	78, 723
Alw44I	GTGCAC	2 cut(s)	348, 881
AlwI	GGATC	2 cut(s)	119, 659
AlwNI	CAGNNNCTG	1 cut(s)	851
Ama87I	CYCGRG	2 cut(s)	98, 443
AoxI	GGCC	6 cut(s)	95, 106, 211, 329, 405, 500
ApaLI	GTGCAC	2 cut(s)	348, 881
ApoI	RAATTY	1 cut(s)	416
Asp700I	GAANNNNTTC	1 cut(s)	852
AspA2I	CCTAGG	1 cut(s)	142
AspS9I	GGNCC	4 cut(s)	96, 330, 457, 500
AsuC2I	CCSGG	3 cut(s)	99, 100, 333
AsuHPI	GGTGA	1 cut(s)	54
AvaI	CYCGRG	2 cut(s)	98, 443
AvaII	GGWCC	1 cut(s)	457
AvrII	CCTAGG	1 cut(s)	142
BaeGI	GKGCMC	2 cut(s)	352, 885
Bbv12I	GWGCWC	2 cut(s)	352, 885
BccI	CCATC	2 cut(s)	169, 701
BceAI	ACGGC	1 cut(s)	913
BcgI	CGANNNNNNTGC	2 cut(s)	627, 661
BciT130I	CCWGG	1 cut(s)	714
BcnI	CCSGG	3 cut(s)	99, 100, 333
BcoDI	GTCTC	2 cut(s)	78, 723
BfaI	CTAG	7 cut(s)	38, 81, 89, 143, 357, 438, 512
BisI	GCNGC	1 cut(s)	596
BlnI	CCTAGG	1 cut(s)	142
BlsI	GCNGC	1 cut(s)	597
Bme1390I	CCNGG	4 cut(s)	99, 100, 333, 714
Bme18I	GGWCC	1 cut(s)	457
BmeT110I	CYCGRG	2 cut(s)	98, 443
BmgT120I	GGNCC	4 cut(s)	96, 330, 457, 500
BmiI	GGNNCC	2 cut(s)	23, 501
BmrFI	CCNGG	4 cut(s)	99, 100, 333, 714
BmsI	GCATC	2 cut(s)	695, 818
BpuEI	CTTGAG	1 cut(s)	332
BpuMI	CCSGG	3 cut(s)	99, 100, 333
BsaI	GGTCTC	2 cut(s)	78, 723
BsaJI	CCNNGG	7 cut(s)	98, 142, 225, 261, 343, 713, 823
Bsc4I	CCNNNNNNNGG	2 cut(s)	104, 838
Bse118I	RCCGGY	1 cut(s)	327
Bse3DI	GCAATG	1 cut(s)	281
BseBI	CCWGG	1 cut(s)	714
BseDI	CCNNGG	7 cut(s)	98, 142, 225, 261, 343, 713, 823
BseGI	GGATG	2 cut(s)	736, 833
BseLI	CCNNNNNNNGG	2 cut(s)	104, 838
BseMI	GCAATG	1 cut(s)	281
BseMII	CTCAG	2 cut(s)	393, 669
BseRI	GAGGAG	2 cut(s)	24, 36
BseSI	GKGCMC	2 cut(s)	352, 885
BseYI	CCCAGC	1 cut(s)	52
BshFI	GGCC	6 cut(s)	97, 108, 213, 331, 407, 502
BsiHKAI	GWGCWC	2 cut(s)	352, 885
BsiHKCI	CYCGRG	2 cut(s)	98, 443
BsiSI	CCGG	4 cut(s)	99, 109, 328, 333
BslI	CCNNNNNNNGG	2 cut(s)	104, 838
BsmAI	GTCTC	2 cut(s)	78, 723
BsnI	GGCC	6 cut(s)	97, 108, 213, 331, 407, 502
Bso31I	GGTCTC	2 cut(s)	78, 723
BsoBI	CYCGRG	2 cut(s)	98, 443
Bsp1286I	GDGCHC	2 cut(s)	352, 885
Bsp143I	GATC	4 cut(s)	91, 111, 302, 651
BspACI	CCGC	2 cut(s)	65, 596
BspANI	GGCC	6 cut(s)	97, 108, 213, 331, 407, 502
BspCNI	CTCAG	2 cut(s)	394, 668
BspLI	GGNNCC	2 cut(s)	23, 501
BspPI	GGATC	2 cut(s)	119, 659
BspTNI	GGTCTC	2 cut(s)	78, 723
BsrDI	GCAATG	1 cut(s)	281
BsrFI	RCCGGY	1 cut(s)	327
BssAI	RCCGGY	1 cut(s)	327
BssECI	CCNNGG	7 cut(s)	98, 142, 225, 261, 343, 713, 823
BssMI	GATC	4 cut(s)	91, 111, 302, 651
BssT1I	CCWWGG	4 cut(s)	142, 225, 343, 823
Bst2UI	CCWGG	1 cut(s)	714
Bst4CI	ACNGT	1 cut(s)	457
Bst6I	CTCTTC	1 cut(s)	892
BstC8I	GCNNGC	1 cut(s)	272
BstDEI	CTNAG	3 cut(s)	296, 402, 655
BstF5I	GGATG	2 cut(s)	736, 833
BstKTI	GATC	4 cut(s)	94, 114, 305, 654
BstMAI	GTCTC	2 cut(s)	78, 723
BstMBI	GATC	4 cut(s)	91, 111, 302, 651
BstMWI	GCNNNNNNNGC	2 cut(s)	337, 671
BstNI	CCWGG	1 cut(s)	714
BstNSI	RCATGY	2 cut(s)	187, 642
BstSCI	CCNGG	4 cut(s)	97, 98, 331, 712
BstSLI	GKGCMC	2 cut(s)	352, 885
BstX2I	RGATCY	1 cut(s)	651
BstYI	RGATCY	1 cut(s)	651
BsuRI	GGCC	6 cut(s)	97, 108, 213, 331, 407, 502
BtsCI	GGATG	2 cut(s)	736, 833
Cac8I	GCNNGC	1 cut(s)	272
CaiI	CAGNNNCTG	1 cut(s)	851
Cfr10I	RCCGGY	1 cut(s)	327
Cfr13I	GGNCC	4 cut(s)	96, 330, 457, 500
Cfr9I	CCCGGG	1 cut(s)	98
Csp6I	GTAC	1 cut(s)	682
CviAII	CATG	2 cut(s)	184, 639
CviQI	GTAC	1 cut(s)	682
DdeI	CTNAG	3 cut(s)	296, 402, 655
DpnI	GATC	4 cut(s)	93, 113, 304, 653
DpnII	GATC	4 cut(s)	91, 111, 302, 651
EaeI	YGGCCR	1 cut(s)	106
Eam1104I	CTCTTC	1 cut(s)	892
EarI	CTCTTC	1 cut(s)	892
Eco130I	CCWWGG	4 cut(s)	142, 225, 343, 823
Eco31I	GGTCTC	2 cut(s)	78, 723
Eco32I	GATATC	1 cut(s)	469
Eco47I	GGWCC	1 cut(s)	457
Eco57I	CTGAAG	1 cut(s)	919
Eco88I	CYCGRG	2 cut(s)	98, 443
EcoRI	GAATTC	1 cut(s)	416
EcoRII	CCWGG	1 cut(s)	712
EcoRV	GATATC	1 cut(s)	469
EcoT14I	CCWWGG	4 cut(s)	142, 225, 343, 823
ErhI	CCWWGG	4 cut(s)	142, 225, 343, 823
FaeI	CATG	2 cut(s)	187, 642
FaiI	YATR	9 cut(s)	185, 324, 393, 422, 476, 640, 747, 818, 920
FatI	CATG	2 cut(s)	183, 638
Fnu4HI	GCNGC	1 cut(s)	596
FokI	GGATG	2 cut(s)	743, 840
Fsp4HI	GCNGC	1 cut(s)	596
FspBI	CTAG	7 cut(s)	38, 81, 89, 143, 357, 438, 512
GluI	GCNGC	1 cut(s)	596
GsaI	CCCAGC	1 cut(s)	56
HaeIII	GGCC	6 cut(s)	97, 108, 213, 331, 407, 502
HapII	CCGG	4 cut(s)	99, 109, 328, 333
Hin1II	CATG	2 cut(s)	187, 642
HindIII	AAGCTT	1 cut(s)	554
HinfI	GANTC	8 cut(s)	173, 360, 441, 581, 644, 842, 848, 900
HpaII	CCGG	4 cut(s)	99, 109, 328, 333
HphI	GGTGA	1 cut(s)	54
Hpy166II	GTNNAC	5 cut(s)	350, 460, 536, 862, 883
Hpy188I	TCNGA	6 cut(s)	73, 262, 466, 658, 847, 938
Hpy188III	TCNNGA	6 cut(s)	38, 115, 194, 445, 546, 585
Hpy8I	GTNNAC	5 cut(s)	350, 460, 536, 862, 883
Hpy99I	CGWCG	2 cut(s)	203, 838
HpyAV	CCTTC	6 cut(s)	122, 161, 265, 284, 616, 943
HpyCH4III	ACNGT	1 cut(s)	457
HpyCH4IV	ACGT	1 cut(s)	701
HpyCH4V	TGCA	3 cut(s)	270, 350, 883
HpyF10VI	GCNNNNNNNGC	2 cut(s)	337, 671
HpyF3I	CTNAG	3 cut(s)	296, 402, 655
HpySE526I	ACGT	1 cut(s)	701
Hsp92II	CATG	2 cut(s)	187, 642
Kzo9I	GATC	4 cut(s)	91, 111, 302, 651
LmnI	GCTCC	1 cut(s)	21
LweI	GCATC	2 cut(s)	695, 818
MaeI	CTAG	7 cut(s)	38, 81, 89, 143, 357, 438, 512
MaeII	ACGT	1 cut(s)	701
MalI	GATC	4 cut(s)	93, 113, 304, 653
MboI	GATC	4 cut(s)	91, 111, 302, 651
MboII	GAAGA	2 cut(s)	681, 909
MfeI	CAATTG	1 cut(s)	539
MflI	RGATCY	1 cut(s)	651
MhlI	GDGCHC	2 cut(s)	352, 885
MluCI	AATT	5 cut(s)	216, 416, 539, 737, 790
MlyI	GAGTC	3 cut(s)	435, 851, 909
MmeI	TCCRAC	1 cut(s)	819
MnlI	CCTC	9 cut(s)	15, 23, 45, 57, 70, 256, 307, 397, 558
MroXI	GAANNNNTTC	1 cut(s)	852
MseI	TTAA	6 cut(s)	552, 726, 774, 779, 795, 873
MslI	CAYNNNNRTG	1 cut(s)	72
MspI	CCGG	4 cut(s)	99, 109, 328, 333
MspR9I	CCNGG	4 cut(s)	99, 100, 333, 714
MunI	CAATTG	1 cut(s)	539
MvaI	CCWGG	1 cut(s)	714
MwoI	GCNNNNNNNGC	2 cut(s)	337, 671
NciI	CCSGG	3 cut(s)	99, 100, 333
NdeII	GATC	4 cut(s)	91, 111, 302, 651
NlaIII	CATG	2 cut(s)	187, 642
NlaIV	GGNNCC	2 cut(s)	23, 501
NspI	RCATGY	2 cut(s)	187, 642
PaeR7I	CTCGAG	1 cut(s)	443
PciI	ACATGT	1 cut(s)	183
PdmI	GAANNNNTTC	1 cut(s)	852
PfeI	GAWTC	5 cut(s)	173, 360, 581, 644, 848
PkrI	GCNGC	1 cut(s)	597
PleI	GAGTC	3 cut(s)	435, 850, 908
PpsI	GAGTC	3 cut(s)	435, 850, 908
PscI	ACATGT	1 cut(s)	183
Psp6I	CCWGG	1 cut(s)	712
PspFI	CCCAGC	1 cut(s)	52
PspGI	CCWGG	1 cut(s)	712
PspN4I	GGNNCC	2 cut(s)	23, 501
PspPI	GGNCC	4 cut(s)	96, 330, 457, 500
PstNI	CAGNNNCTG	1 cut(s)	851
PsuI	RGATCY	1 cut(s)	651
RsaI	GTAC	1 cut(s)	683
RsaNI	GTAC	1 cut(s)	682
RseI	CAYNNNNRTG	1 cut(s)	72
SaqAI	TTAA	6 cut(s)	552, 726, 774, 779, 795, 873
SatI	GCNGC	1 cut(s)	596
Sau3AI	GATC	4 cut(s)	91, 111, 302, 651
Sau96I	GGNCC	4 cut(s)	96, 330, 457, 500
SchI	GAGTC	3 cut(s)	435, 851, 909
ScrFI	CCNGG	4 cut(s)	99, 100, 333, 714
SduI	GDGCHC	2 cut(s)	352, 885
SfaNI	GCATC	2 cut(s)	695, 818
Sfr274I	CTCGAG	1 cut(s)	443
SinI	GGWCC	1 cut(s)	457
SlaI	CTCGAG	1 cut(s)	443
SmaI	CCCGGG	1 cut(s)	100
SmiMI	CAYNNNNRTG	1 cut(s)	72
SmlI	CTYRAG	2 cut(s)	311, 443
SmoI	CTYRAG	2 cut(s)	311, 443
Sse9I	AATT	5 cut(s)	216, 416, 539, 737, 790
SsiI	CCGC	2 cut(s)	65, 596
SspI	AATATT	1 cut(s)	946
SspMI	CTAG	7 cut(s)	38, 81, 89, 143, 357, 438, 512
StyD4I	CCNGG	4 cut(s)	97, 98, 331, 712
StyI	CCWWGG	4 cut(s)	142, 225, 343, 823
TaaI	ACNGT	1 cut(s)	457
TaiI	ACGT	1 cut(s)	704
TaqI	TCGA	5 cut(s)	7, 114, 375, 444, 895
TasI	AATT	5 cut(s)	216, 416, 539, 737, 790
TauI	GCSGC	1 cut(s)	598
TfiI	GAWTC	5 cut(s)	173, 360, 581, 644, 848
Tru1I	TTAA	6 cut(s)	552, 726, 774, 779, 795, 873
Tru9I	TTAA	6 cut(s)	552, 726, 774, 779, 795, 873
TspDTI	ATGAA	6 cut(s)	143, 409, 593, 675, 813, 901
TspGWI	ACGGA	2 cut(s)	461, 628
TspMI	CCCGGG	1 cut(s)	98
VneI	GTGCAC	2 cut(s)	348, 881
VpaK11BI	GGWCC	1 cut(s)	457
XapI	RAATTY	1 cut(s)	416
XbaI	TCTAGA	1 cut(s)	37
XceI	RCATGY	2 cut(s)	187, 642
XhoI	CTCGAG	1 cut(s)	443
XmaI	CCCGGG	1 cut(s)	98
XmaJI	CCTAGG	1 cut(s)	142
XmnI	GAANNNNTTC	1 cut(s)	852
XspI	CTAG	7 cut(s)	38, 81, 89, 143, 357, 438, 512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.