Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001041

Physical Location & Seq

Genomic Coordinates Forward (+)

6860188 .. 6860988

Gene Structure 801 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g12180.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGGTGAGCAACCCAAGAGGAAATCAGGGATATTTGCATCGTTGAGCGACGATTTGCTTGGCCAAGTTGTTAACAAGGTCAAGGATAAACAAGACAGAAAATCATTCTCCGAGGTCTGCAAGCAATGGCTTAAAGTGGAAGGTCTAGACCGATCATGGCTTACCGTTTATGTTAGAGATCCCATGATTCCGCTTCCTGCACTAACTAGACTCCCAAATATAGTCAGTTTAGCAGTATGGGAATGCAGGCCCCACACCAACCTTGAATTCATATCCCATACATGTCCCAAAATCGAGAGCATCATGATTGAATGTAGAGATGAGAAGCAAACAGGTGATGGTGGTGTTTTGAGCCCCAAAGGTCTATCTGCTTTGGGAGAAGGGTGTCCCAAATTGTCCCATGTTGAGATTATGGGGCTAAATGCAATAGGGAATTCTGGAGTTGTTGAGCTTGTACATTCAGCACATAACTTGAAGTCCCTGCTTTTTCTAAGCAATAAGTTGATATCAGATGAAGCCCTCAGAGGAATTGGGTCCGCATCTTCCATTAGCATTTTAGAGTTGAATGATTGTGATGACATTACCAATGAGGGACTGGCTTATTTGGCGAATGGATCTACCTCGAAAACCCTCAAGAAATTAATCATTGAGTGCCTTTGTAGGAGTAAAATCACTGATACCGGTGTCGAGATTTTGCGCAAAATGTGTAGCCTGGAGCACCTGGAATTGTCCATTTGGGGCACAACCGCCACAACGAGTCGAATCACTGATATTGGAGGTGTGGGAATCGCTGCCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_6

Protein Analysis

267

Amino Acids

28.91

Weight (kDa)

6.32

Isoelectric Point (pI)

38.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box_5	PF18511	14 - 51	4.8e-08	F-box
DUF7885	PF25372	121 - 244	3.1e-09	Leucine Rich Repeat Domain of unknown function (DUF7885)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001041)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40700 FvH4_5g10370 FvH4_5g12160 FvH4_5g12180 FvH4_5g12190 FvH4_5g12200 FvH4_5g12210 FvH4_5g12211
rosa_chinensis	RchiOBHm_Chr5g0073461 RchiOBHm_Chr5g0073471 RchiOBHm_Chr7g0185341 RchiOBHm_Chr7g0185381 RchiOBHm_Chr7g0185401
rosa_laevigata	RLG00000004916 RLG00000004917 RLG00000004921 RLG00000019401 RLG00000036387
rosa_multiflora	Rmu_co8366929.1_g000001 Rmu_co8392105.1_g000001 Rmu_sc0001761.1_g000011 Rmu_sc0001761.1_g000012 Rmu_sc0001761.1_g000013 Rmu_sc0001761.1_g000016 Rmu_sc0004670.1_g000010 Rmu_sc0008496.1_g000005 Rmu_sc0023242.1_g000005 Rmu_sc0023242.1_g000006 Rmu_ssc0000226.1_g000026 Rmu_ssc0000226.1_g000027
rosa_roxburghii	Rroxscaffold_1G00007790 Rroxscaffold_1G00017220 Rroxscaffold_2G00110040 Rroxscaffold_3G00269000 Rroxscaffold_3G00269010
rosa_rugosa	Rorug05G0423700 Rorug06G0468100 Rorug06G0468700
rosa_samantha	Rh2CG354600 Rh2CG354700 Rh2DG393800 Rh5AG481000 Rh5CG455400 Rh5CG524900 Rh5DG514100 Rh7AG074000 Rh7AG074100 Rh7AG074200 Rh7AG074600 Rh7BG072600 Rh7BG073200 Rh7BG073300 Rh7BG073400 Rh7DG073200 Rh7DG073600 Rh7DG073700 Rh7DG073800
rosa_wichuraiana	Rw2G030200 Rw7G006080 Rw7G006120 Rw7G006130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	698
AciI	CCGC	3 cut(s)	191, 537, 747
AclWI	GGATC	2 cut(s)	173, 622
AcoI	YGGCCR	1 cut(s)	61
AcsI	RAATTY	2 cut(s)	266, 433
AfaI	GTAC	1 cut(s)	456
AflIII	ACRYGT	1 cut(s)	281
AgeI	ACCGGT	1 cut(s)	680
AgsI	TTSAA	4 cut(s)	266, 311, 475, 565
AjnI	CCWGG	2 cut(s)	711, 720
AjuI	GAANNNNNNNTTGG	2 cut(s)	251, 283
AluBI	AGCT	1 cut(s)	451
AluI	AGCT	1 cut(s)	451
Alw21I	GWGCWC	1 cut(s)	720
AlwI	GGATC	2 cut(s)	173, 622
AoxI	GGCC	2 cut(s)	61, 248
ApeKI	GCWGC	1 cut(s)	791
ApoI	RAATTY	2 cut(s)	266, 433
AseI	ATTAAT	1 cut(s)	641
AsiGI	ACCGGT	1 cut(s)	680
AspLEI	GCGC	1 cut(s)	699
AspS9I	GGNCC	2 cut(s)	249, 534
AsuHPI	GGTGA	2 cut(s)	17, 347
AvaII	GGWCC	1 cut(s)	534
BaeGI	GKGCMC	1 cut(s)	743
BaeI	ACNNNNGTAYC	2 cut(s)	669, 702
BalI	TGGCCA	1 cut(s)	63
BanII	GRGCYC	1 cut(s)	356
Bbv12I	GWGCWC	1 cut(s)	720
BbvI	GCAGC	1 cut(s)	778
BccI	CCATC	1 cut(s)	332
BciT130I	CCWGG	2 cut(s)	713, 722
BfaI	CTAG	2 cut(s)	146, 207
BisI	GCNGC	1 cut(s)	792
BlsI	GCNGC	1 cut(s)	793
Bme1390I	CCNGG	2 cut(s)	713, 722
Bme18I	GGWCC	1 cut(s)	534
BmgT120I	GGNCC	2 cut(s)	249, 534
BmiI	GGNNCC	2 cut(s)	251, 535
BmrFI	CCNGG	2 cut(s)	713, 722
BmsI	GCATC	3 cut(s)	47, 309, 548
BpmI	CTGGAG	2 cut(s)	459, 734
BpuEI	CTTGAG	1 cut(s)	617
BsaJI	CCNNGG	1 cut(s)	111
BsaWI	WCCGGW	1 cut(s)	680
Bse118I	RCCGGY	1 cut(s)	680
Bse1I	ACTGG	1 cut(s)	600
Bse3DI	GCAATG	1 cut(s)	131
BseBI	CCWGG	2 cut(s)	713, 722
BseDI	CCNNGG	1 cut(s)	111
BseMI	GCAATG	1 cut(s)	131
BseMII	CTCAG	1 cut(s)	535
BseNI	ACTGG	1 cut(s)	600
BseSI	GKGCMC	1 cut(s)	743
BseXI	GCAGC	1 cut(s)	778
BsgI	GTGCAG	1 cut(s)	183
BshFI	GGCC	2 cut(s)	63, 250
BshTI	ACCGGT	1 cut(s)	680
BsiHKAI	GWGCWC	1 cut(s)	720
BsiSI	CCGG	1 cut(s)	681
BslFI	GGGAC	5 cut(s)	270, 372, 382, 463, 606
BsmFI	GGGAC	5 cut(s)	270, 372, 382, 463, 606
BsmI	GAATGC	1 cut(s)	248
BsnI	GGCC	2 cut(s)	63, 250
Bsp1286I	GDGCHC	3 cut(s)	356, 720, 743
Bsp1407I	TGTACA	1 cut(s)	454
Bsp143I	GATC	3 cut(s)	152, 178, 614
BspACI	CCGC	3 cut(s)	191, 537, 747
BspANI	GGCC	2 cut(s)	63, 250
BspCNI	CTCAG	1 cut(s)	534
BspHI	TCATGA	1 cut(s)	303
BspLI	GGNNCC	2 cut(s)	251, 535
BspPI	GGATC	2 cut(s)	173, 622
BsrDI	GCAATG	1 cut(s)	131
BsrFI	RCCGGY	1 cut(s)	680
BsrGI	TGTACA	1 cut(s)	454
BsrI	ACTGG	1 cut(s)	600
BssAI	RCCGGY	1 cut(s)	680
BssECI	CCNNGG	1 cut(s)	111
BssMI	GATC	3 cut(s)	152, 178, 614
Bst2UI	CCWGG	2 cut(s)	713, 722
Bst4CI	ACNGT	1 cut(s)	166
BstAUI	TGTACA	1 cut(s)	454
BstC8I	GCNNGC	2 cut(s)	122, 248
BstDEI	CTNAG	2 cut(s)	491, 521
BstHHI	GCGC	1 cut(s)	699
BstKTI	GATC	3 cut(s)	155, 181, 617
BstMBI	GATC	3 cut(s)	152, 178, 614
BstMWI	GCNNNNNNNGC	1 cut(s)	605
BstNI	CCWGG	2 cut(s)	713, 722
BstNSI	RCATGY	1 cut(s)	285
BstSCI	CCNGG	2 cut(s)	711, 720
BstSLI	GKGCMC	1 cut(s)	743
BstV1I	GCAGC	1 cut(s)	778
BstX2I	RGATCY	2 cut(s)	178, 614
BstYI	RGATCY	2 cut(s)	178, 614
BsuRI	GGCC	2 cut(s)	63, 250
BtsIMutI	CAGTG	2 cut(s)	672, 765
Cac8I	GCNNGC	2 cut(s)	122, 248
CciI	TCATGA	1 cut(s)	303
CfoI	GCGC	1 cut(s)	699
Cfr10I	RCCGGY	1 cut(s)	680
Cfr13I	GGNCC	2 cut(s)	249, 534
Csp6I	GTAC	1 cut(s)	455
CspAI	ACCGGT	1 cut(s)	680
CviAII	CATG	5 cut(s)	156, 184, 282, 304, 401
CviQI	GTAC	1 cut(s)	455
DdeI	CTNAG	2 cut(s)	491, 521
DpnI	GATC	3 cut(s)	154, 180, 616
DpnII	GATC	3 cut(s)	152, 178, 614
EaeI	YGGCCR	1 cut(s)	61
Eco24I	GRGCYC	1 cut(s)	356
Eco32I	GATATC	1 cut(s)	507
Eco47I	GGWCC	1 cut(s)	534
EcoO109I	RGGNCCY	1 cut(s)	249
EcoRI	GAATTC	2 cut(s)	266, 433
EcoRII	CCWGG	2 cut(s)	711, 720
EcoRV	GATATC	1 cut(s)	507
EcoT38I	GRGCYC	1 cut(s)	356
FaeI	CATG	5 cut(s)	159, 187, 285, 307, 404
FaqI	GGGAC	5 cut(s)	270, 372, 382, 463, 606
FatI	CATG	5 cut(s)	155, 183, 281, 303, 400
Fnu4HI	GCNGC	1 cut(s)	792
FriOI	GRGCYC	1 cut(s)	356
Fsp4HI	GCNGC	1 cut(s)	792
FspBI	CTAG	2 cut(s)	146, 207
FspI	TGCGCA	1 cut(s)	698
GlaI	GCGC	1 cut(s)	698
GluI	GCNGC	1 cut(s)	792
GsuI	CTGGAG	2 cut(s)	459, 734
HaeIII	GGCC	2 cut(s)	63, 250
HapII	CCGG	1 cut(s)	681
HhaI	GCGC	1 cut(s)	699
Hin1II	CATG	5 cut(s)	159, 187, 285, 307, 404
Hin6I	GCGC	1 cut(s)	697
HinP1I	GCGC	1 cut(s)	697
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HinfI	GANTC	5 cut(s)	187, 210, 757, 762, 786
HpaI	GTTAAC	1 cut(s)	73
HpaII	CCGG	1 cut(s)	681
HphI	GGTGA	2 cut(s)	17, 347
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	3 cut(s)	112, 511, 524
Hpy188III	TCNNGA	6 cut(s)	146, 295, 304, 438, 634, 688
Hpy8I	GTNNAC	1 cut(s)	73
Hpy99I	CGWCG	1 cut(s)	53
HpyAV	CCTTC	2 cut(s)	134, 374
HpyCH4III	ACNGT	1 cut(s)	166
HpyCH4V	TGCA	5 cut(s)	38, 120, 200, 246, 425
HpyF10VI	GCNNNNNNNGC	1 cut(s)	605
HpyF3I	CTNAG	2 cut(s)	491, 521
Hsp92II	CATG	5 cut(s)	159, 187, 285, 307, 404
HspAI	GCGC	1 cut(s)	697
KspAI	GTTAAC	1 cut(s)	73
Kzo9I	GATC	3 cut(s)	152, 178, 614
LmnI	GCTCC	1 cut(s)	715
Lsp1109I	GCAGC	1 cut(s)	778
LweI	GCATC	3 cut(s)	47, 309, 548
MaeI	CTAG	2 cut(s)	146, 207
MalI	GATC	3 cut(s)	154, 180, 616
MboI	GATC	3 cut(s)	152, 178, 614
MboII	GAAGA	1 cut(s)	534
MflI	RGATCY	2 cut(s)	178, 614
MhlI	GDGCHC	3 cut(s)	356, 720, 743
MlsI	TGGCCA	1 cut(s)	63
MluCI	AATT	6 cut(s)	266, 392, 433, 528, 638, 725
MluNI	TGGCCA	1 cut(s)	63
MlyI	GAGTC	2 cut(s)	204, 766
MnlI	CCTC	8 cut(s)	12, 106, 518, 530, 583, 631, 641, 770
Mox20I	TGGCCA	1 cut(s)	63
MscI	TGGCCA	1 cut(s)	63
MseI	TTAA	3 cut(s)	72, 132, 641
Msp20I	TGGCCA	1 cut(s)	63
MspI	CCGG	1 cut(s)	681
MspR9I	CCNGG	2 cut(s)	713, 722
Mva1269I	GAATGC	1 cut(s)	248
MvaI	CCWGG	2 cut(s)	713, 722
MwoI	GCNNNNNNNGC	1 cut(s)	605
NdeII	GATC	3 cut(s)	152, 178, 614
NlaIII	CATG	5 cut(s)	159, 187, 285, 307, 404
NlaIV	GGNNCC	2 cut(s)	251, 535
NsbI	TGCGCA	1 cut(s)	698
NspI	RCATGY	1 cut(s)	285
PagI	TCATGA	1 cut(s)	303
PciI	ACATGT	1 cut(s)	281
PctI	GAATGC	1 cut(s)	248
PfeI	GAWTC	3 cut(s)	187, 762, 786
PinAI	ACCGGT	1 cut(s)	680
PkrI	GCNGC	1 cut(s)	793
PleI	GAGTC	2 cut(s)	204, 765
PpsI	GAGTC	2 cut(s)	204, 765
PscI	ACATGT	1 cut(s)	281
PshBI	ATTAAT	1 cut(s)	641
Psp6I	CCWGG	2 cut(s)	711, 720
PspGI	CCWGG	2 cut(s)	711, 720
PspN4I	GGNNCC	2 cut(s)	251, 535
PspPI	GGNCC	2 cut(s)	249, 534
PsuI	RGATCY	2 cut(s)	178, 614
RsaI	GTAC	1 cut(s)	456
RsaNI	GTAC	1 cut(s)	455
SaqAI	TTAA	3 cut(s)	72, 132, 641
SatI	GCNGC	1 cut(s)	792
Sau3AI	GATC	3 cut(s)	152, 178, 614
Sau96I	GGNCC	2 cut(s)	249, 534
SchI	GAGTC	2 cut(s)	204, 766
ScrFI	CCNGG	2 cut(s)	713, 722
SduI	GDGCHC	3 cut(s)	356, 720, 743
SfaNI	GCATC	3 cut(s)	47, 309, 548
SinI	GGWCC	1 cut(s)	534
SmlI	CTYRAG	1 cut(s)	632
SmoI	CTYRAG	1 cut(s)	632
Sse9I	AATT	6 cut(s)	266, 392, 433, 528, 638, 725
SsiI	CCGC	3 cut(s)	191, 537, 747
SspMI	CTAG	2 cut(s)	146, 207
StyD4I	CCNGG	2 cut(s)	711, 720
TaaI	ACNGT	1 cut(s)	166
TaqI	TCGA	4 cut(s)	294, 623, 687, 760
TaqII	GACCGA	1 cut(s)	165
TasI	AATT	6 cut(s)	266, 392, 433, 528, 638, 725
TatI	WGTACW	1 cut(s)	454
TfiI	GAWTC	3 cut(s)	187, 762, 786
Tru1I	TTAA	3 cut(s)	72, 132, 641
Tru9I	TTAA	3 cut(s)	72, 132, 641
TscAI	CASTG	2 cut(s)	679, 772
TseI	GCWGC	1 cut(s)	791
TspDTI	ATGAA	2 cut(s)	259, 528
TspRI	CASTG	2 cut(s)	679, 772
VpaK11BI	GGWCC	1 cut(s)	534
VspI	ATTAAT	1 cut(s)	641
XapI	RAATTY	2 cut(s)	266, 433
XbaI	TCTAGA	1 cut(s)	145
XceI	RCATGY	1 cut(s)	285
XcmI	CCANNNNNNNNNTGG	1 cut(s)	592
XspI	CTAG	2 cut(s)	146, 207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.