Rw7G006080

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0001041
Physical Location & Seq
Forward (+)
5133794 .. 5135300
1507 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G006080.1

Sequence Viewer

Length: 972 bp
ATGGCTGTAGACACCAAAAGTAAATCAGGGAAAATTTCTGTGCTCAGCGACCATTTTCTTGGCCTAATCCTCAACTACGTCCCCAACAAAGACGATAGAAAATCGTCTAAACCGGTCATCACTCCGGTTTGCTTTGACGAACCGGAAATTCCCCTAGCTGCGTTGACTAGGTTCCCAAACTTGGTCCACTTCGAAACATGGAAGCTTATGACCGACACCGACCTCGAGTTCATAGCCCAAACCTGTCCGCAAATCGAGGTCACCAACTATGGTTCACACTTCCTTGGGCGTAAAGGTCTATGGGTGGGTGTCCCAGACTATGTAATTGCTTCATCTCCGATCCAGTACTCAGAGCAATTGGGTCGGCAACTTATATTACGACTCTGGAGTTTACGAGCTGTTGCAACATTGCTGATCTCGGTTTGGGATTTTTGGCAAATGGGTGTGTCTCTAAAAAGTAAAACCCTCAAGAGATTGGTGCTTGAGGAAATCAAAGGGATCACTGATACTGGGGTGTGGCGATCCTCTGCGATTCAAACCCTCAAAGAATTGAGACTGTGTCTTGAGCGCATCTCAGACGCCACCATTGTTGCTCTTGCTGAGAATTGCATCAACTTGGAGATATTTGATTTAAACGGTTGTCATGAGGTGAGGGGAGATGGCATTCGTGCATTTTCAAGTCACAAGTGCTTGAAACGCCTTGTATTGCTCGGTATGGGGGATTTTGATCTTTCAGATGTGGAAAGCATAGCGCTTGGATGCCCGTTATTGGAGTCTGTTGTTGTGGATTTGAGCTTGAGGCTGGATCCAGCTTGGAGCACTGAATTGCTGCATGACCGCACTAAAAGTGTCATCAAGTTAGTTATTGATGGACTGACATTTTGCCTGAAACTAGATTTTCTGTGCAACTGCTTTCCGAAGAAAAGTTACCCAGATTTAAATTCTCTGAAGCCCAGTAATCGTCATCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

323

Amino Acids

36.3

Weight (kDa)

6.66

Isoelectric Point (pI)

31.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 9
AciI CCGC 2 cut(s) 248, 838
AclWI GGATC 5 cut(s) 334, 506, 516, 800, 813
AcsI RAATTY 3 cut(s) 33, 147, 940
AcuI CTGAAG 1 cut(s) 968
AcyI GRCGYC 1 cut(s) 579
AfaI GTAC 1 cut(s) 347
AfeI AGCGCT 1 cut(s) 753
AfiI CCNNNNNNNGG 2 cut(s) 181, 769
AgeI ACCGGT 1 cut(s) 112
AgsI TTSAA 3 cut(s) 536, 678, 694
AluBI AGCT 5 cut(s) 158, 205, 398, 795, 812
AluI AGCT 5 cut(s) 158, 205, 398, 795, 812
Alw21I GWGCWC 2 cut(s) 45, 821
Alw26I GTCTC 2 cut(s) 453, 547
AlwI GGATC 5 cut(s) 334, 506, 516, 800, 813
Ama87I CYCGRG 1 cut(s) 224
Aor51HI AGCGCT 1 cut(s) 753
AoxI GGCC 1 cut(s) 61
ApeKI GCWGC 2 cut(s) 158, 829
ApoI RAATTY 3 cut(s) 33, 147, 940
ArsI GACNNNNNNTTYG 2 cut(s) 864, 896
AsiGI ACCGGT 1 cut(s) 112
AspLEI GCGC 2 cut(s) 570, 754
AspS9I GGNCC 1 cut(s) 184
AsuHPI GGTGA 2 cut(s) 253, 661
AsuII TTCGAA 1 cut(s) 192
AvaI CYCGRG 1 cut(s) 224
AvaII GGWCC 1 cut(s) 184
BaeI ACNNNNGTAYC 2 cut(s) 498, 531
BamHI GGATCC 1 cut(s) 805
BarI GAAGNNNNNNTAC 2 cut(s) 911, 943
Bbv12I GWGCWC 2 cut(s) 45, 821
BbvI GCAGC 2 cut(s) 145, 816
BccI CCATC 2 cut(s) 653, 863
BcgI CGANNNNNNTGC 2 cut(s) 344, 378
BcoDI GTCTC 2 cut(s) 453, 547
BfaI CTAG 3 cut(s) 155, 168, 893
BfmI CTRYAG 1 cut(s) 6
BfoI RGCGCY 1 cut(s) 755
BisI GCNGC 2 cut(s) 159, 830
BlpI GCTNAGC 1 cut(s) 44
BlsI GCNGC 2 cut(s) 160, 831
BmcAI AGTACT 1 cut(s) 347
Bme18I GGWCC 1 cut(s) 184
BmeT110I CYCGRG 1 cut(s) 224
BmgT120I GGNCC 1 cut(s) 184
BmiI GGNNCC 2 cut(s) 173, 807
BmrI ACTGGG 2 cut(s) 519, 948
BmsI GCATC 3 cut(s) 579, 618, 749
BmuI ACTGGG 2 cut(s) 519, 948
BplI GAGNNNNNCTC 2 cut(s) 557, 589
BpmI CTGGAG 1 cut(s) 406
Bpu1102I GCTNAGC 1 cut(s) 44
Bpu14I TTCGAA 1 cut(s) 192
BpuEI CTTGAG 4 cut(s) 452, 503, 584, 817
BsaBI GATNNNNATC 1 cut(s) 726
BsaHI GRCGYC 1 cut(s) 579
BsaJI CCNNGG 1 cut(s) 283
BsaWI WCCGGW 3 cut(s) 112, 124, 142
Bsc4I CCNNNNNNNGG 2 cut(s) 181, 769
Bse118I RCCGGY 1 cut(s) 112
Bse1I ACTGG 3 cut(s) 343, 514, 954
Bse3DI GCAATG 1 cut(s) 407
Bse8I GATNNNNATC 1 cut(s) 726
BseDI CCNNGG 1 cut(s) 283
BseGI GGATG 1 cut(s) 764
BseJI GATNNNNATC 1 cut(s) 726
BseLI CCNNNNNNNGG 2 cut(s) 181, 769
BseMI GCAATG 1 cut(s) 407
BseMII CTCAG 4 cut(s) 58, 363, 588, 591
BseNI ACTGG 3 cut(s) 343, 514, 954
BseXI GCAGC 2 cut(s) 145, 816
BshFI GGCC 1 cut(s) 63
BshTI ACCGGT 1 cut(s) 112
BsiHKAI GWGCWC 2 cut(s) 45, 821
BsiHKCI CYCGRG 1 cut(s) 224
BsiSI CCGG 3 cut(s) 113, 125, 143
BslFI GGGAC 2 cut(s) 65, 296
BslI CCNNNNNNNGG 2 cut(s) 181, 769
BsmAI GTCTC 2 cut(s) 453, 547
BsmFI GGGAC 2 cut(s) 65, 296
BsmI GAATGC 1 cut(s) 663
BsnI GGCC 1 cut(s) 63
BsoBI CYCGRG 1 cut(s) 224
Bsp119I TTCGAA 1 cut(s) 192
Bsp1286I GDGCHC 2 cut(s) 45, 821
Bsp143I GATC 6 cut(s) 339, 414, 498, 521, 727, 805
Bsp1720I GCTNAGC 1 cut(s) 44
BspACI CCGC 2 cut(s) 248, 838
BspANI GGCC 1 cut(s) 63
BspCNI CTCAG 4 cut(s) 57, 362, 587, 592
BspHI TCATGA 1 cut(s) 643
BspLI GGNNCC 2 cut(s) 173, 807
BspPI GGATC 5 cut(s) 334, 506, 516, 800, 813
BspT104I TTCGAA 1 cut(s) 192
BsrDI GCAATG 1 cut(s) 407
BsrFI RCCGGY 1 cut(s) 112
BsrI ACTGG 3 cut(s) 343, 514, 954
BssAI RCCGGY 1 cut(s) 112
BssECI CCNNGG 1 cut(s) 283
BssMI GATC 6 cut(s) 339, 414, 498, 521, 727, 805
BssNI GRCGYC 1 cut(s) 579
BssT1I CCWWGG 1 cut(s) 283
Bst4CI ACNGT 2 cut(s) 558, 638
BstACI GRCGYC 1 cut(s) 579
BstBI TTCGAA 1 cut(s) 192
BstDEI CTNAG 4 cut(s) 44, 349, 574, 600
BstEII GGTNACC 1 cut(s) 259
BstF5I GGATG 1 cut(s) 764
BstH2I RGCGCY 1 cut(s) 755
BstHHI GCGC 2 cut(s) 570, 754
BstKTI GATC 6 cut(s) 342, 417, 501, 524, 730, 808
BstMAI GTCTC 2 cut(s) 453, 547
BstMBI GATC 6 cut(s) 339, 414, 498, 521, 727, 805
BstMWI GCNNNNNNNGC 1 cut(s) 696
BstPI GGTNACC 1 cut(s) 259
BstSFI CTRYAG 1 cut(s) 6
BstV1I GCAGC 2 cut(s) 145, 816
BstX2I RGATCY 1 cut(s) 805
BstXI CCANNNNNNTGG 1 cut(s) 59
BstYI RGATCY 1 cut(s) 805
BsuRI GGCC 1 cut(s) 63
BtsCI GGATG 1 cut(s) 764
BtsIMutI CAGTG 2 cut(s) 501, 819
CciI TCATGA 1 cut(s) 643
CfoI GCGC 2 cut(s) 570, 754
Cfr10I RCCGGY 1 cut(s) 112
Cfr13I GGNCC 1 cut(s) 184
CseI GACGC 1 cut(s) 587
Csp6I GTAC 1 cut(s) 346
CspAI ACCGGT 1 cut(s) 112
CspCI CAANNNNNGTGG 2 cut(s) 571, 606
CviAII CATG 3 cut(s) 198, 644, 833
CviQI GTAC 1 cut(s) 346
DdeI CTNAG 4 cut(s) 44, 349, 574, 600
DpnI GATC 6 cut(s) 341, 416, 500, 523, 729, 807
DpnII GATC 6 cut(s) 339, 414, 498, 521, 727, 805
DraI TTTAAA 2 cut(s) 633, 939
Eco130I CCWWGG 1 cut(s) 283
Eco47I GGWCC 1 cut(s) 184
Eco47III AGCGCT 1 cut(s) 753
Eco57I CTGAAG 1 cut(s) 968
Eco88I CYCGRG 1 cut(s) 224
Eco91I GGTNACC 1 cut(s) 259
EcoO65I GGTNACC 1 cut(s) 259
EcoT14I CCWWGG 1 cut(s) 283
ErhI CCWWGG 1 cut(s) 283
FaeI CATG 3 cut(s) 201, 647, 836
FaqI GGGAC 2 cut(s) 65, 296
FatI CATG 3 cut(s) 197, 643, 832
FblI GTMKAC 1 cut(s) 9
Fnu4HI GCNGC 2 cut(s) 159, 830
FokI GGATG 1 cut(s) 771
Fsp4HI GCNGC 2 cut(s) 159, 830
FspBI CTAG 3 cut(s) 155, 168, 893
GlaI GCGC 2 cut(s) 569, 753
GluI GCNGC 2 cut(s) 159, 830
GsuI CTGGAG 1 cut(s) 406
HaeII RGCGCY 1 cut(s) 755
HaeIII GGCC 1 cut(s) 63
HapII CCGG 3 cut(s) 113, 125, 143
HgaI GACGC 1 cut(s) 587
HhaI GCGC 2 cut(s) 570, 754
Hin1I GRCGYC 1 cut(s) 579
Hin1II CATG 3 cut(s) 201, 647, 836
Hin6I GCGC 2 cut(s) 568, 752
HinP1I GCGC 2 cut(s) 568, 752
HincII GTYRAC 1 cut(s) 165
HindII GTYRAC 1 cut(s) 165
HindIII AAGCTT 1 cut(s) 203
HinfI GANTC 3 cut(s) 381, 532, 773
HpaII CCGG 3 cut(s) 113, 125, 143
HphI GGTGA 2 cut(s) 253, 661
Hpy166II GTNNAC 5 cut(s) 10, 165, 187, 275, 392
Hpy188I TCNGA 6 cut(s) 339, 352, 577, 736, 918, 948
Hpy188III TCNNGA 4 cut(s) 385, 469, 563, 644
Hpy8I GTNNAC 5 cut(s) 10, 165, 187, 275, 392
HpyCH4III ACNGT 2 cut(s) 558, 638
HpyCH4IV ACGT 1 cut(s) 78
HpyCH4V TGCA 5 cut(s) 404, 609, 671, 832, 906
HpyF10VI GCNNNNNNNGC 1 cut(s) 696
HpyF3I CTNAG 4 cut(s) 44, 349, 574, 600
HpySE526I ACGT 1 cut(s) 78
Hsp92I GRCGYC 1 cut(s) 579
Hsp92II CATG 3 cut(s) 201, 647, 836
HspAI GCGC 2 cut(s) 568, 752
Kzo9I GATC 6 cut(s) 339, 414, 498, 521, 727, 805
LmnI GCTCC 1 cut(s) 816
Lsp1109I GCAGC 2 cut(s) 145, 816
LweI GCATC 3 cut(s) 579, 618, 749
MaeI CTAG 3 cut(s) 155, 168, 893
MaeII ACGT 1 cut(s) 78
MaeIII GTNAC 3 cut(s) 259, 680, 926
MalI GATC 6 cut(s) 341, 416, 500, 523, 729, 807
MboI GATC 6 cut(s) 339, 414, 498, 521, 727, 805
MboII GAAGA 1 cut(s) 931
MfeI CAATTG 1 cut(s) 356
MflI RGATCY 1 cut(s) 805
MhlI GDGCHC 2 cut(s) 45, 821
MluCI AATT 8 cut(s) 33, 147, 324, 356, 548, 604, 824, 940
MlyI GAGTC 2 cut(s) 375, 782
MseI TTAA 2 cut(s) 632, 938
MspI CCGG 3 cut(s) 113, 125, 143
MunI CAATTG 1 cut(s) 356
Mva1269I GAATGC 1 cut(s) 663
MwoI GCNNNNNNNGC 1 cut(s) 696
NdeII GATC 6 cut(s) 339, 414, 498, 521, 727, 805
NlaIII CATG 3 cut(s) 201, 647, 836
NlaIV GGNNCC 2 cut(s) 173, 807
NmuCI GTSAC 2 cut(s) 259, 680
NspV TTCGAA 1 cut(s) 192
PaeR7I CTCGAG 1 cut(s) 224
PagI TCATGA 1 cut(s) 643
PctI GAATGC 1 cut(s) 663
PfeI GAWTC 1 cut(s) 532
PflFI GACNNNGTC 1 cut(s) 558
PinAI ACCGGT 1 cut(s) 112
PkrI GCNGC 2 cut(s) 160, 831
PleI GAGTC 2 cut(s) 375, 781
PpsI GAGTC 2 cut(s) 375, 781
PspEI GGTNACC 1 cut(s) 259
PspN4I GGNNCC 2 cut(s) 173, 807
PspPI GGNCC 1 cut(s) 184
PspXI VCTCGAGB 1 cut(s) 224
PsuI RGATCY 1 cut(s) 805
PsyI GACNNNGTC 1 cut(s) 558
RsaI GTAC 1 cut(s) 347
RsaNI GTAC 1 cut(s) 346
SaqAI TTAA 2 cut(s) 632, 938
SatI GCNGC 2 cut(s) 159, 830
Sau3AI GATC 6 cut(s) 339, 414, 498, 521, 727, 805
Sau96I GGNCC 1 cut(s) 184
ScaI AGTACT 1 cut(s) 347
SchI GAGTC 2 cut(s) 375, 782
SduI GDGCHC 2 cut(s) 45, 821
SfaNI GCATC 3 cut(s) 579, 618, 749
SfcI CTRYAG 1 cut(s) 6
Sfr274I CTCGAG 1 cut(s) 224
SfuI TTCGAA 1 cut(s) 192
SinI GGWCC 1 cut(s) 184
SlaI CTCGAG 1 cut(s) 224
SmiI ATTTAAAT 1 cut(s) 939
SmlI CTYRAG 5 cut(s) 224, 467, 482, 563, 796
SmoI CTYRAG 5 cut(s) 224, 467, 482, 563, 796
Sse9I AATT 8 cut(s) 33, 147, 324, 356, 548, 604, 824, 940
SsiI CCGC 2 cut(s) 248, 838
SspMI CTAG 3 cut(s) 155, 168, 893
StyI CCWWGG 1 cut(s) 283
SwaI ATTTAAAT 1 cut(s) 939
TaaI ACNGT 2 cut(s) 558, 638
TaiI ACGT 1 cut(s) 81
TaqI TCGA 3 cut(s) 192, 225, 255
TaqII GACCGA 1 cut(s) 227
TasI AATT 8 cut(s) 33, 147, 324, 356, 548, 604, 824, 940
TatI WGTACW 1 cut(s) 345
TfiI GAWTC 1 cut(s) 532
Tru1I TTAA 2 cut(s) 632, 938
Tru9I TTAA 2 cut(s) 632, 938
TscAI CASTG 2 cut(s) 508, 826
TseFI GTSAC 2 cut(s) 259, 680
TseI GCWGC 2 cut(s) 158, 829
Tsp45I GTSAC 2 cut(s) 259, 680
TspDTI ATGAA 2 cut(s) 220, 321
TspRI CASTG 2 cut(s) 508, 826
Tth111I GACNNNGTC 1 cut(s) 558
VpaK11BI GGWCC 1 cut(s) 184
XapI RAATTY 3 cut(s) 33, 147, 940
XhoI CTCGAG 1 cut(s) 224
XmiI GTMKAC 1 cut(s) 9
XspI CTAG 3 cut(s) 155, 168, 893
ZrmI AGTACT 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.