Rh5CG455400

F-box LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Forward (+)
63339571 .. 63340666
1096 bp
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UTR
Exon/CDS
Intron
Rh5CG455400.1

Sequence Viewer

Length: 366 bp
ATGTGGGGAGACATTCAGGAACGGGCTGATGATGTGAATAACCACAACTTCAGTGACTCTGAGCAGAGTCAAATCACTGACGTCGGAGGTGTGGCAATCTCCGCGCTTGGAACCCTCAAGGCATTAAACTTGGGTTGGCTGGACCATGTGACAGACCACACCATTGTTGCTGTTGCTGAGAAATGCCTCAACTTGGACGTGCTTGATTTGAATGGTTGTAAACTGTCAGTAGCGACTGACGTTGGAGGTGTGGCAATCTCCACACTTGGAACCCCCAAGAAATTGAATTTGGGTTGGCTGGAACATGTGACAGACTGCACCATTGTTGCTGTTGCTGAGAAATGGCTCAACTTGGAGATTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

121

Amino Acids

12.95

Weight (kDa)

4.46

Isoelectric Point (pI)

23.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 84
AccII CGCG 1 cut(s) 104
AciI CCGC 1 cut(s) 102
AcsI RAATTY 1 cut(s) 286
AcuI CTGAAG 1 cut(s) 34
AcyI GRCGYC 1 cut(s) 81
AfiI CCNNNNNNNGG 1 cut(s) 193
AflIII ACRYGT 1 cut(s) 304
AgsI TTSAA 2 cut(s) 211, 286
AjiI CACGTC 1 cut(s) 199
AjuI GAANNNNNNNTTGG 2 cut(s) 272, 304
Alw26I GTCTC 1 cut(s) 3
ApoI RAATTY 1 cut(s) 286
AspLEI GCGC 1 cut(s) 106
AspS9I GGNCC 1 cut(s) 142
AvaII GGWCC 1 cut(s) 142
BcoDI GTCTC 1 cut(s) 3
Bme18I GGWCC 1 cut(s) 142
BmgBI CACGTC 1 cut(s) 199
BmgT120I GGNCC 1 cut(s) 142
BmiI GGNNCC 2 cut(s) 112, 271
BpuEI CTTGAG 1 cut(s) 101
BsaHI GRCGYC 1 cut(s) 81
Bsc4I CCNNNNNNNGG 1 cut(s) 193
BseLI CCNNNNNNNGG 1 cut(s) 193
BseMII CTCAG 3 cut(s) 51, 168, 327
BsgI GTGCAG 1 cut(s) 301
Bsh1236I CGCG 1 cut(s) 104
BslI CCNNNNNNNGG 1 cut(s) 193
BsmAI GTCTC 1 cut(s) 3
BspACI CCGC 1 cut(s) 102
BspCNI CTCAG 3 cut(s) 52, 169, 328
BspFNI CGCG 1 cut(s) 104
BspLI GGNNCC 2 cut(s) 112, 271
BssNI GRCGYC 1 cut(s) 81
Bst4CI ACNGT 1 cut(s) 225
BstACI GRCGYC 1 cut(s) 81
BstDEI CTNAG 3 cut(s) 60, 177, 336
BstFNI CGCG 1 cut(s) 104
BstHHI GCGC 1 cut(s) 106
BstMAI GTCTC 1 cut(s) 3
BstMWI GCNNNNNNNGC 1 cut(s) 101
BstNSI RCATGY 1 cut(s) 308
BstUI CGCG 1 cut(s) 104
BtrI CACGTC 1 cut(s) 199
BtsIMutI CAGTG 2 cut(s) 58, 75
CfoI GCGC 1 cut(s) 106
Cfr13I GGNCC 1 cut(s) 142
CviAII CATG 2 cut(s) 146, 305
CviJI RGCY 4 cut(s) 26, 139, 298, 346
CviKI_1 RGCY 4 cut(s) 26, 139, 298, 346
DdeI CTNAG 3 cut(s) 60, 177, 336
Eco47I GGWCC 1 cut(s) 142
Eco57I CTGAAG 1 cut(s) 34
FaeI CATG 2 cut(s) 149, 308
FaiI YATR 2 cut(s) 147, 306
FatI CATG 2 cut(s) 145, 304
GlaI GCGC 1 cut(s) 105
HhaI GCGC 1 cut(s) 106
Hin1I GRCGYC 1 cut(s) 81
Hin1II CATG 2 cut(s) 149, 308
Hin6I GCGC 1 cut(s) 104
HinP1I GCGC 1 cut(s) 104
HinfI GANTC 2 cut(s) 56, 67
Hpy166II GTNNAC 1 cut(s) 221
Hpy188I TCNGA 2 cut(s) 61, 86
Hpy188III TCNNGA 2 cut(s) 17, 363
Hpy8I GTNNAC 1 cut(s) 221
Hpy99I CGWCG 1 cut(s) 86
HpyCH4III ACNGT 1 cut(s) 225
HpyCH4IV ACGT 3 cut(s) 81, 198, 240
HpyCH4V TGCA 1 cut(s) 318
HpyF10VI GCNNNNNNNGC 1 cut(s) 101
HpyF3I CTNAG 3 cut(s) 60, 177, 336
HpySE526I ACGT 3 cut(s) 81, 198, 240
Hsp92I GRCGYC 1 cut(s) 81
Hsp92II CATG 2 cut(s) 149, 308
HspAI GCGC 1 cut(s) 104
LpnPI CCDG 3 cut(s) 2, 125, 284
MaeII ACGT 3 cut(s) 81, 198, 240
MaeIII GTNAC 3 cut(s) 53, 148, 307
MluCI AATT 2 cut(s) 281, 286
MlyI GAGTC 2 cut(s) 50, 76
MmeI TCCRAC 2 cut(s) 64, 223
MnlI CCTC 4 cut(s) 80, 125, 197, 239
MseI TTAA 1 cut(s) 125
MvnI CGCG 1 cut(s) 104
MwoI GCNNNNNNNGC 1 cut(s) 101
NlaIII CATG 2 cut(s) 149, 308
NlaIV GGNNCC 2 cut(s) 112, 271
NmuCI GTSAC 3 cut(s) 53, 148, 307
NspI RCATGY 1 cut(s) 308
PciI ACATGT 1 cut(s) 304
PleI GAGTC 2 cut(s) 50, 75
PpsI GAGTC 2 cut(s) 50, 75
PscI ACATGT 1 cut(s) 304
PspN4I GGNNCC 2 cut(s) 112, 271
PspPI GGNCC 1 cut(s) 142
SaqAI TTAA 1 cut(s) 125
Sau96I GGNCC 1 cut(s) 142
SchI GAGTC 2 cut(s) 50, 76
SetI ASST 5 cut(s) 84, 91, 201, 243, 250
SinI GGWCC 1 cut(s) 142
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
Sse9I AATT 2 cut(s) 281, 286
SsiI CCGC 1 cut(s) 102
TaaI ACNGT 1 cut(s) 225
TaiI ACGT 3 cut(s) 84, 201, 243
TasI AATT 2 cut(s) 281, 286
Tru1I TTAA 1 cut(s) 125
Tru9I TTAA 1 cut(s) 125
TscAI CASTG 2 cut(s) 58, 82
TseFI GTSAC 3 cut(s) 53, 148, 307
Tsp45I GTSAC 3 cut(s) 53, 148, 307
TspRI CASTG 2 cut(s) 58, 82
VpaK11BI GGWCC 1 cut(s) 142
XapI RAATTY 1 cut(s) 286
XceI RCATGY 1 cut(s) 308
ZraI GACGTC 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.