Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001041

Physical Location & Seq

Genomic Coordinates Forward (+)

58920677 .. 58923107

Gene Structure 2431 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0423700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGCAAGGAAGGTGGTGGAGTGTAGCGAGGTTTTATGGCAGTTTGGCTGGTCGGATAGACGGGTCGGATTGGGATCGCAGCGATGGATTGAGACTTCCGTCAAAACTGGATCGGAATGGTGTGCGGTGGGTGGCAGCGGAAGGATTGATAGGCACCATTCTCGGCCTCCTCTTTGGCTATGCGGTCGTGTGACTGTGGATGGGAGCAGAGGCTGGTTGATGCTCGAGACCATTGGGCGACAGGTTTTCTTTGATTGTAACCCTAACTTCAATTCTGAAATTTCATCTAAGAGCAGGAGACTCCGCTTCGAGCTGCTGTTAATTATGGCGAAGCCTCCGAGTGTTGAGATTAATCCGCAATTCATAACATTTACGCATGTTACTATGGAGTCCAATAAGTACACATGTGTTCAGGAAACAATGCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_6

Protein Analysis

142

Amino Acids

16.31

Weight (kDa)

8.99

Isoelectric Point (pI)

58.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001041)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40700 FvH4_5g10370 FvH4_5g12160 FvH4_5g12180 FvH4_5g12190 FvH4_5g12200 FvH4_5g12210 FvH4_5g12211
rosa_chinensis	RchiOBHm_Chr5g0073461 RchiOBHm_Chr5g0073471 RchiOBHm_Chr7g0185341 RchiOBHm_Chr7g0185381 RchiOBHm_Chr7g0185401
rosa_laevigata	RLG00000004916 RLG00000004917 RLG00000004921 RLG00000019401 RLG00000036387
rosa_multiflora	Rmu_co8366929.1_g000001 Rmu_co8392105.1_g000001 Rmu_sc0001761.1_g000011 Rmu_sc0001761.1_g000012 Rmu_sc0001761.1_g000013 Rmu_sc0001761.1_g000016 Rmu_sc0004670.1_g000010 Rmu_sc0008496.1_g000005 Rmu_sc0023242.1_g000005 Rmu_sc0023242.1_g000006 Rmu_ssc0000226.1_g000026 Rmu_ssc0000226.1_g000027
rosa_roxburghii	Rroxscaffold_1G00007790 Rroxscaffold_1G00017220 Rroxscaffold_2G00110040 Rroxscaffold_3G00269000 Rroxscaffold_3G00269010
rosa_rugosa	Rorug05G0423700 Rorug06G0468100 Rorug06G0468700
rosa_samantha	Rh2CG354600 Rh2CG354700 Rh2DG393800 Rh5AG481000 Rh5CG455400 Rh5CG524900 Rh5DG514100 Rh7AG074000 Rh7AG074100 Rh7AG074200 Rh7AG074600 Rh7BG072600 Rh7BG073200 Rh7BG073300 Rh7BG073400 Rh7DG073200 Rh7DG073600 Rh7DG073700 Rh7DG073800
rosa_wichuraiana	Rw2G030200 Rw7G006080 Rw7G006120 Rw7G006130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	153
AciI	CCGC	5 cut(s)	125, 138, 183, 304, 356
AclWI	GGATC	2 cut(s)	82, 118
AcsI	RAATTY	1 cut(s)	279
AfaI	GTAC	1 cut(s)	401
AflIII	ACRYGT	1 cut(s)	404
AgsI	TTSAA	1 cut(s)	271
AluBI	AGCT	1 cut(s)	313
AluI	AGCT	1 cut(s)	313
Alw26I	GTCTC	3 cut(s)	86, 221, 292
AlwI	GGATC	2 cut(s)	82, 118
AlwNI	CAGNNNCTG	1 cut(s)	213
Ama87I	CYCGRG	1 cut(s)	224
AoxI	GGCC	1 cut(s)	164
ApeKI	GCWGC	3 cut(s)	79, 135, 313
ApoI	RAATTY	1 cut(s)	279
AseI	ATTAAT	1 cut(s)	351
AvaI	CYCGRG	1 cut(s)	224
BanI	GGYRCC	1 cut(s)	153
BbvI	GCAGC	3 cut(s)	91, 147, 300
BccI	CCATC	2 cut(s)	78, 194
BceAI	ACGGC	1 cut(s)	409
BcgI	CGANNNNNNTGC	2 cut(s)	143, 177
BcoDI	GTCTC	3 cut(s)	86, 221, 292
BisI	GCNGC	3 cut(s)	80, 136, 314
BlsI	GCNGC	3 cut(s)	81, 137, 315
BmeT110I	CYCGRG	1 cut(s)	224
BmiI	GGNNCC	1 cut(s)	155
BmsI	GCATC	1 cut(s)	210
BoxI	GACNNNNGTC	1 cut(s)	98
BsaBI	GATNNNNATC	1 cut(s)	73
BsaI	GGTCTC	1 cut(s)	221
Bse1I	ACTGG	1 cut(s)	112
Bse8I	GATNNNNATC	1 cut(s)	73
BseGI	GGATG	1 cut(s)	205
BseJI	GATNNNNATC	1 cut(s)	73
BseNI	ACTGG	1 cut(s)	112
BseRI	GAGGAG	1 cut(s)	159
BseXI	GCAGC	3 cut(s)	91, 147, 300
Bsh1285I	CGRYCG	1 cut(s)	187
BshFI	GGCC	1 cut(s)	166
BshNI	GGYRCC	1 cut(s)	153
BsiEI	CGRYCG	1 cut(s)	187
BsiHKCI	CYCGRG	1 cut(s)	224
BsmAI	GTCTC	3 cut(s)	86, 221, 292
BsnI	GGCC	1 cut(s)	166
Bso31I	GGTCTC	1 cut(s)	221
BsoBI	CYCGRG	1 cut(s)	224
Bsp143I	GATC	2 cut(s)	74, 110
BspACI	CCGC	5 cut(s)	125, 138, 183, 304, 356
BspANI	GGCC	1 cut(s)	166
BspLI	GGNNCC	1 cut(s)	155
BspPI	GGATC	2 cut(s)	82, 118
BspT107I	GGYRCC	1 cut(s)	153
BspTNI	GGTCTC	1 cut(s)	221
BsrI	ACTGG	1 cut(s)	112
BssMI	GATC	2 cut(s)	74, 110
Bst4CI	ACNGT	1 cut(s)	196
BstDEI	CTNAG	1 cut(s)	288
BstF5I	GGATG	1 cut(s)	205
BstKTI	GATC	2 cut(s)	77, 113
BstMAI	GTCTC	3 cut(s)	86, 221, 292
BstMBI	GATC	2 cut(s)	74, 110
BstMCI	CGRYCG	1 cut(s)	187
BstNSI	RCATGY	2 cut(s)	380, 408
BstPAI	GACNNNNGTC	1 cut(s)	98
BstV1I	GCAGC	3 cut(s)	91, 147, 300
BsuRI	GGCC	1 cut(s)	166
BtgZI	GCGATG	1 cut(s)	97
BtsCI	GGATG	1 cut(s)	205
CaiI	CAGNNNCTG	1 cut(s)	213
Csp6I	GTAC	1 cut(s)	400
CspCI	CAANNNNNGTGG	1 cut(s)	29
CviAII	CATG	2 cut(s)	377, 405
CviJI	RGCY	6 cut(s)	48, 166, 178, 213, 313, 334
CviKI_1	RGCY	6 cut(s)	48, 166, 178, 213, 313, 334
CviQI	GTAC	1 cut(s)	400
DdeI	CTNAG	1 cut(s)	288
DpnI	GATC	2 cut(s)	76, 112
DpnII	GATC	2 cut(s)	74, 110
Eco31I	GGTCTC	1 cut(s)	221
Eco88I	CYCGRG	1 cut(s)	224
FaeI	CATG	2 cut(s)	380, 408
FaiI	YATR	7 cut(s)	37, 181, 326, 365, 378, 386, 406
FatI	CATG	2 cut(s)	376, 404
Fnu4HI	GCNGC	3 cut(s)	80, 136, 314
FokI	GGATG	1 cut(s)	212
Fsp4HI	GCNGC	3 cut(s)	80, 136, 314
GluI	GCNGC	3 cut(s)	80, 136, 314
HaeIII	GGCC	1 cut(s)	166
Hin1II	CATG	2 cut(s)	380, 408
HinfI	GANTC	2 cut(s)	300, 389
Hpy166II	GTNNAC	1 cut(s)	402
Hpy188I	TCNGA	5 cut(s)	55, 68, 115, 277, 339
Hpy188III	TCNNGA	2 cut(s)	226, 413
Hpy8I	GTNNAC	1 cut(s)	402
HpyAV	CCTTC	2 cut(s)	4, 135
HpyCH4III	ACNGT	1 cut(s)	196
HpyF3I	CTNAG	1 cut(s)	288
Hsp92II	CATG	2 cut(s)	380, 408
Kzo9I	GATC	2 cut(s)	74, 110
LmnI	GCTCC	1 cut(s)	204
LpnPI	CCDG	6 cut(s)	34, 93, 199, 227, 280, 398
Lsp1109I	GCAGC	3 cut(s)	91, 147, 300
LweI	GCATC	1 cut(s)	210
MaeIII	GTNAC	3 cut(s)	190, 257, 379
MalI	GATC	2 cut(s)	76, 112
MboI	GATC	2 cut(s)	74, 110
MluCI	AATT	4 cut(s)	271, 279, 321, 359
MlyI	GAGTC	2 cut(s)	294, 398
MmeI	TCCRAC	2 cut(s)	33, 46
MnlI	CCTC	5 cut(s)	22, 177, 180, 203, 345
MseI	TTAA	2 cut(s)	320, 351
MspA1I	CMGCKG	1 cut(s)	138
NdeII	GATC	2 cut(s)	74, 110
NlaIII	CATG	2 cut(s)	380, 408
NlaIV	GGNNCC	1 cut(s)	155
NmeAIII	GCCGAG	1 cut(s)	142
NmuCI	GTSAC	1 cut(s)	190
NspI	RCATGY	2 cut(s)	380, 408
PaeR7I	CTCGAG	1 cut(s)	224
PciI	ACATGT	1 cut(s)	404
PkrI	GCNGC	3 cut(s)	81, 137, 315
PleI	GAGTC	2 cut(s)	294, 397
PpsI	GAGTC	2 cut(s)	294, 397
PscI	ACATGT	1 cut(s)	404
PshAI	GACNNNNGTC	1 cut(s)	98
PshBI	ATTAAT	1 cut(s)	351
PspN4I	GGNNCC	1 cut(s)	155
PstNI	CAGNNNCTG	1 cut(s)	213
RsaI	GTAC	1 cut(s)	401
RsaNI	GTAC	1 cut(s)	400
SaqAI	TTAA	2 cut(s)	320, 351
SatI	GCNGC	3 cut(s)	80, 136, 314
Sau3AI	GATC	2 cut(s)	74, 110
SchI	GAGTC	2 cut(s)	294, 398
SetI	ASST	4 cut(s)	15, 33, 246, 315
SfaNI	GCATC	1 cut(s)	210
Sfr274I	CTCGAG	1 cut(s)	224
SlaI	CTCGAG	1 cut(s)	224
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
Sse9I	AATT	4 cut(s)	271, 279, 321, 359
SsiI	CCGC	5 cut(s)	125, 138, 183, 304, 356
TaaI	ACNGT	1 cut(s)	196
TaqI	TCGA	2 cut(s)	225, 309
TasI	AATT	4 cut(s)	271, 279, 321, 359
TatI	WGTACW	1 cut(s)	399
Tru1I	TTAA	2 cut(s)	320, 351
Tru9I	TTAA	2 cut(s)	320, 351
TseFI	GTSAC	1 cut(s)	190
TseI	GCWGC	3 cut(s)	79, 135, 313
Tsp45I	GTSAC	1 cut(s)	190
TspDTI	ATGAA	2 cut(s)	273, 352
TspGWI	ACGGA	1 cut(s)	88
VspI	ATTAAT	1 cut(s)	351
XapI	RAATTY	1 cut(s)	279
XceI	RCATGY	2 cut(s)	380, 408
XhoI	CTCGAG	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.