Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001761.1

Orthogroup ID

OG0001041

Physical Location & Seq

Genomic Coordinates Reverse (-)

71830 .. 72508

Gene Structure 679 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001761.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

atgggtgggtgtcccagactgtccaaggtttcacttttcggaaatagaatcggcaactctgcggtttttgctctttggaatttagatgtaattgcttcatctccgatccagtactcagagcaattgggtcggcaacttatattacgactctggagtttacgagctgttgcaacattgctgatctcggtttgggatttttggcaaatgggtgtgtctctaaaaagtaaaaccctcaagagattggtgcttgaggaaatcaaagggatcactaatactgggaccctcaaagaattgagactgtgtcttgagcgcatctcagacgccaccattgttgctcttgctgagaattgcatcaacttggagatacttgattttaagggttgtcatgaggtgaggggagatggcattcgtgcattttcaagtcacaagtgcttgaaacgccttgtattgctcggtttgggggattttgatctttcggatgtggaaagcatagcgcttggatggccgttattggagtctgttgtggtggatttgagcttgaggctgcatccagcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_6

Protein Analysis

185

Amino Acids

20.5

Weight (kDa)

8.32

Isoelectric Point (pI)

33.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001041)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40700 FvH4_5g10370 FvH4_5g12160 FvH4_5g12180 FvH4_5g12190 FvH4_5g12200 FvH4_5g12210 FvH4_5g12211
rosa_chinensis	RchiOBHm_Chr5g0073461 RchiOBHm_Chr5g0073471 RchiOBHm_Chr7g0185341 RchiOBHm_Chr7g0185381 RchiOBHm_Chr7g0185401
rosa_laevigata	RLG00000004916 RLG00000004917 RLG00000004921 RLG00000019401 RLG00000036387
rosa_multiflora	Rmu_co8366929.1_g000001 Rmu_co8392105.1_g000001 Rmu_sc0001761.1_g000011 Rmu_sc0001761.1_g000012 Rmu_sc0001761.1_g000013 Rmu_sc0001761.1_g000016 Rmu_sc0004670.1_g000010 Rmu_sc0008496.1_g000005 Rmu_sc0023242.1_g000005 Rmu_sc0023242.1_g000006 Rmu_ssc0000226.1_g000026 Rmu_ssc0000226.1_g000027
rosa_roxburghii	Rroxscaffold_1G00007790 Rroxscaffold_1G00017220 Rroxscaffold_2G00110040 Rroxscaffold_3G00269000 Rroxscaffold_3G00269010
rosa_rugosa	Rorug05G0423700 Rorug06G0468100 Rorug06G0468700
rosa_samantha	Rh2CG354600 Rh2CG354700 Rh2DG393800 Rh5AG481000 Rh5CG455400 Rh5CG524900 Rh5DG514100 Rh7AG074000 Rh7AG074100 Rh7AG074200 Rh7AG074600 Rh7BG072600 Rh7BG073200 Rh7BG073300 Rh7BG073400 Rh7DG073200 Rh7DG073600 Rh7DG073700 Rh7DG073800
rosa_wichuraiana	Rw2G030200 Rw7G006080 Rw7G006120 Rw7G006130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	62
AclWI	GGATC	2 cut(s)	100, 272
AcoI	YGGCCR	1 cut(s)	503
AcsI	RAATTY	1 cut(s)	79
AcyI	GRCGYC	1 cut(s)	321
AfaI	GTAC	1 cut(s)	113
AfeI	AGCGCT	1 cut(s)	495
AgsI	TTSAA	2 cut(s)	420, 436
AluBI	AGCT	3 cut(s)	164, 537, 554
AluI	AGCT	3 cut(s)	164, 537, 554
Alw26I	GTCTC	2 cut(s)	219, 289
AlwI	GGATC	2 cut(s)	100, 272
Aor51HI	AGCGCT	1 cut(s)	495
AoxI	GGCC	1 cut(s)	503
ApeKI	GCWGC	1 cut(s)	544
ApoI	RAATTY	1 cut(s)	79
AspLEI	GCGC	2 cut(s)	312, 496
AspS9I	GGNCC	1 cut(s)	279
AsuHPI	GGTGA	1 cut(s)	403
AvaII	GGWCC	1 cut(s)	279
BbvI	GCAGC	1 cut(s)	531
BccI	CCATC	2 cut(s)	395, 495
BceAI	ACGGC	1 cut(s)	490
BcgI	CGANNNNNNTGC	2 cut(s)	110, 144
BcoDI	GTCTC	2 cut(s)	219, 289
BfoI	RGCGCY	1 cut(s)	497
BisI	GCNGC	1 cut(s)	545
BlsI	GCNGC	1 cut(s)	546
BmcAI	AGTACT	1 cut(s)	113
Bme18I	GGWCC	1 cut(s)	279
BmgT120I	GGNCC	1 cut(s)	279
BmiI	GGNNCC	2 cut(s)	280, 281
BmrI	ACTGGG	1 cut(s)	285
BmsI	GCATC	2 cut(s)	321, 360
BmuI	ACTGGG	1 cut(s)	285
BplI	GAGNNNNNCTC	2 cut(s)	299, 331
BpmI	CTGGAG	1 cut(s)	172
BpuEI	CTTGAG	3 cut(s)	218, 269, 326
BsaBI	GATNNNNATC	1 cut(s)	468
BsaHI	GRCGYC	1 cut(s)	321
BsaJI	CCNNGG	1 cut(s)	24
Bse1I	ACTGG	2 cut(s)	109, 280
Bse3DI	GCAATG	1 cut(s)	173
Bse8I	GATNNNNATC	1 cut(s)	468
BseDI	CCNNGG	1 cut(s)	24
BseGI	GGATG	3 cut(s)	484, 506, 547
BseJI	GATNNNNATC	1 cut(s)	468
BseMI	GCAATG	1 cut(s)	173
BseMII	CTCAG	3 cut(s)	129, 330, 333
BseNI	ACTGG	2 cut(s)	109, 280
BseXI	GCAGC	1 cut(s)	531
BshFI	GGCC	1 cut(s)	505
BslFI	GGGAC	1 cut(s)	292
BsmAI	GTCTC	2 cut(s)	219, 289
BsmFI	GGGAC	1 cut(s)	292
BsmI	GAATGC	1 cut(s)	405
BsnI	GGCC	1 cut(s)	505
Bsp143I	GATC	4 cut(s)	105, 180, 264, 469
BspACI	CCGC	1 cut(s)	62
BspANI	GGCC	1 cut(s)	505
BspCNI	CTCAG	3 cut(s)	128, 329, 334
BspHI	TCATGA	1 cut(s)	385
BspLI	GGNNCC	2 cut(s)	280, 281
BspPI	GGATC	2 cut(s)	100, 272
BsrDI	GCAATG	1 cut(s)	173
BsrI	ACTGG	2 cut(s)	109, 280
BssECI	CCNNGG	1 cut(s)	24
BssMI	GATC	4 cut(s)	105, 180, 264, 469
BssNI	GRCGYC	1 cut(s)	321
BssT1I	CCWWGG	1 cut(s)	24
Bst4CI	ACNGT	2 cut(s)	21, 300
BstACI	GRCGYC	1 cut(s)	321
BstDEI	CTNAG	3 cut(s)	115, 316, 342
BstF5I	GGATG	3 cut(s)	484, 506, 547
BstH2I	RGCGCY	1 cut(s)	497
BstHHI	GCGC	2 cut(s)	312, 496
BstKTI	GATC	4 cut(s)	108, 183, 267, 472
BstMAI	GTCTC	2 cut(s)	219, 289
BstMBI	GATC	4 cut(s)	105, 180, 264, 469
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 438, 502
BstV1I	GCAGC	1 cut(s)	531
BsuRI	GGCC	1 cut(s)	505
BtsCI	GGATG	3 cut(s)	484, 506, 547
CciI	TCATGA	1 cut(s)	385
CfoI	GCGC	2 cut(s)	312, 496
Cfr13I	GGNCC	1 cut(s)	279
CseI	GACGC	1 cut(s)	329
Csp6I	GTAC	1 cut(s)	112
CspCI	CAANNNNNGTGG	2 cut(s)	313, 348
CviAII	CATG	1 cut(s)	386
CviJI	RGCY	5 cut(s)	164, 505, 537, 544, 554
CviKI_1	RGCY	5 cut(s)	164, 505, 537, 544, 554
CviQI	GTAC	1 cut(s)	112
DdeI	CTNAG	3 cut(s)	115, 316, 342
DpnI	GATC	4 cut(s)	107, 182, 266, 471
DpnII	GATC	4 cut(s)	105, 180, 264, 469
EaeI	YGGCCR	1 cut(s)	503
Eco130I	CCWWGG	1 cut(s)	24
Eco47I	GGWCC	1 cut(s)	279
Eco47III	AGCGCT	1 cut(s)	495
EcoO109I	RGGNCCY	1 cut(s)	279
EcoT14I	CCWWGG	1 cut(s)	24
ErhI	CCWWGG	1 cut(s)	24
FaeI	CATG	1 cut(s)	389
FaiI	YATR	3 cut(s)	140, 387, 491
FaqI	GGGAC	1 cut(s)	292
FatI	CATG	1 cut(s)	385
Fnu4HI	GCNGC	1 cut(s)	545
FokI	GGATG	3 cut(s)	491, 513, 534
Fsp4HI	GCNGC	1 cut(s)	545
GlaI	GCGC	2 cut(s)	311, 495
GluI	GCNGC	1 cut(s)	545
GsuI	CTGGAG	1 cut(s)	172
HaeII	RGCGCY	1 cut(s)	497
HaeIII	GGCC	1 cut(s)	505
HgaI	GACGC	1 cut(s)	329
HhaI	GCGC	2 cut(s)	312, 496
Hin1I	GRCGYC	1 cut(s)	321
Hin1II	CATG	1 cut(s)	389
Hin6I	GCGC	2 cut(s)	310, 494
HinP1I	GCGC	2 cut(s)	310, 494
HinfI	GANTC	3 cut(s)	48, 147, 515
HphI	GGTGA	1 cut(s)	403
Hpy166II	GTNNAC	1 cut(s)	158
Hpy188I	TCNGA	5 cut(s)	41, 105, 118, 319, 478
Hpy188III	TCNNGA	4 cut(s)	151, 235, 305, 386
Hpy8I	GTNNAC	1 cut(s)	158
HpyCH4III	ACNGT	2 cut(s)	21, 300
HpyCH4V	TGCA	4 cut(s)	170, 351, 413, 547
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 438, 502
HpyF3I	CTNAG	3 cut(s)	115, 316, 342
Hsp92I	GRCGYC	1 cut(s)	321
Hsp92II	CATG	1 cut(s)	389
HspAI	GCGC	2 cut(s)	310, 494
KflI	GGGWCCC	1 cut(s)	279
Kzo9I	GATC	4 cut(s)	105, 180, 264, 469
LpnPI	CCDG	4 cut(s)	28, 122, 136, 261
Lsp1109I	GCAGC	1 cut(s)	531
LweI	GCATC	2 cut(s)	321, 360
MaeIII	GTNAC	1 cut(s)	422
MalI	GATC	4 cut(s)	107, 182, 266, 471
MboI	GATC	4 cut(s)	105, 180, 264, 469
MfeI	CAATTG	1 cut(s)	122
MluCI	AATT	5 cut(s)	79, 90, 122, 290, 346
MlyI	GAGTC	2 cut(s)	141, 524
MnlI	CCTC	6 cut(s)	242, 244, 293, 382, 387, 534
MseI	TTAA	1 cut(s)	375
MunI	CAATTG	1 cut(s)	122
Mva1269I	GAATGC	1 cut(s)	405
MwoI	GCNNNNNNNGC	3 cut(s)	68, 438, 502
NdeII	GATC	4 cut(s)	105, 180, 264, 469
NlaIII	CATG	1 cut(s)	389
NlaIV	GGNNCC	2 cut(s)	280, 281
NmuCI	GTSAC	1 cut(s)	422
PagI	TCATGA	1 cut(s)	385
PctI	GAATGC	1 cut(s)	405
PfeI	GAWTC	1 cut(s)	48
PflFI	GACNNNGTC	1 cut(s)	300
PkrI	GCNGC	1 cut(s)	546
PleI	GAGTC	2 cut(s)	141, 523
PpsI	GAGTC	2 cut(s)	141, 523
PpuMI	RGGWCCY	1 cut(s)	279
Psp5II	RGGWCCY	1 cut(s)	279
PspN4I	GGNNCC	2 cut(s)	280, 281
PspPI	GGNCC	1 cut(s)	279
PspPPI	RGGWCCY	1 cut(s)	279
PsyI	GACNNNGTC	1 cut(s)	300
RsaI	GTAC	1 cut(s)	113
RsaNI	GTAC	1 cut(s)	112
SaqAI	TTAA	1 cut(s)	375
SatI	GCNGC	1 cut(s)	545
Sau3AI	GATC	4 cut(s)	105, 180, 264, 469
Sau96I	GGNCC	1 cut(s)	279
ScaI	AGTACT	1 cut(s)	113
SchI	GAGTC	2 cut(s)	141, 524
SetI	ASST	5 cut(s)	30, 166, 393, 539, 556
SfaNI	GCATC	2 cut(s)	321, 360
SinI	GGWCC	1 cut(s)	279
SmlI	CTYRAG	4 cut(s)	233, 248, 305, 538
SmoI	CTYRAG	4 cut(s)	233, 248, 305, 538
Sse9I	AATT	5 cut(s)	79, 90, 122, 290, 346
SsiI	CCGC	1 cut(s)	62
StyI	CCWWGG	1 cut(s)	24
TaaI	ACNGT	2 cut(s)	21, 300
TasI	AATT	5 cut(s)	79, 90, 122, 290, 346
TatI	WGTACW	1 cut(s)	111
TfiI	GAWTC	1 cut(s)	48
Tru1I	TTAA	1 cut(s)	375
Tru9I	TTAA	1 cut(s)	375
TseFI	GTSAC	1 cut(s)	422
TseI	GCWGC	1 cut(s)	544
Tsp45I	GTSAC	1 cut(s)	422
TspDTI	ATGAA	1 cut(s)	87
Tth111I	GACNNNGTC	1 cut(s)	300
VpaK11BI	GGWCC	1 cut(s)	279
XapI	RAATTY	1 cut(s)	79
ZrmI	AGTACT	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.