FvH4_5g10370

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0001041
Physical Location & Seq
Reverse (-)
5909729 .. 5910772
1044 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g10370.t1

Sequence Viewer

Length: 735 bp
ATGAGAGTACGTGATTGCCAGACCCACACTGACCTTGAGTTCATAGCCCAAACATGTCCCAAAATCGAGAGCGTCAGGGTTGAATGCAGAGATGAGAAGCCGGTAGGTGGTGTTTTGAGCCCGAAAGGTCTACGTGCTTTGGGAGAAGGGTGTCCCAAATTGTGTATTGTTGATATTGTAGGGCGAAAGGCAATAGGGAATTCTGGAGTTGTTGAGCTTCTACATTCAACACATAACTTGGATGCCCTTGGTTTGCTGGACAATGAGTTGATATCTGATGAAGCCCTCAGAGGAATTGGGTGCACATCTTCCATTAGCATTCTAGATTTGATACATTGTCATAACATTACCGACGAGGGATTGGCTTTCTTGGCGAATGGATCTACCTCAAGGACCCTCAAGAAATTGATCATCGACTGTTGCCCTGAAATCACTGATACTGGGGTTGAGCATTTGCGCAAAATGTGTAGCCTGGAGAGCCTGGAATTGTGCTTGTTGGGAACAAGGAGTCCAATCACTGATATTGGAGGTCTGGGAATCTCTGCAATTAGAACCCTCAAGGAATTAATATTGATTCATCCGGACGTGTCTGACTCTACAATGGTCGCTCTTGCGGAAAATTGTAGCAAACTGGAAACACTTGATATAAAGGGTTGTGAAAATGTAACTATAGCTGGCATTTGTGCATTTTGCAATCATAAGTGCTTGAAGATCCTTACACATGGGAGGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

245

Amino Acids

26.28

Weight (kDa)

5.71

Isoelectric Point (pI)

31.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7885 PF25372 51 - 165 3.2e-07 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 458
AccI GTMKAC 1 cut(s) 130
AccIII TCCGGA 1 cut(s) 580
AciI CCGC 1 cut(s) 614
AclWI GGATC 2 cut(s) 388, 706
AcsI RAATTY 1 cut(s) 199
AfaI GTAC 1 cut(s) 9
AfiI CCNNNNNNNGG 1 cut(s) 107
AflIII ACRYGT 2 cut(s) 53, 585
AgsI TTSAA 3 cut(s) 83, 228, 709
AjiI CACGTC 1 cut(s) 586
AjnI CCWGG 2 cut(s) 471, 480
AloI GAACNNNNNNTCC 2 cut(s) 493, 525
AluBI AGCT 2 cut(s) 217, 674
AluI AGCT 2 cut(s) 217, 674
Alw21I GWGCWC 1 cut(s) 305
Alw44I GTGCAC 1 cut(s) 301
AlwI GGATC 2 cut(s) 388, 706
Aor13HI TCCGGA 1 cut(s) 580
ApaLI GTGCAC 1 cut(s) 301
ApoI RAATTY 1 cut(s) 199
AseI ATTAAT 1 cut(s) 566
AspLEI GCGC 1 cut(s) 459
AspS9I GGNCC 1 cut(s) 393
AvaII GGWCC 1 cut(s) 393
BaeGI GKGCMC 1 cut(s) 305
BaeI ACNNNNGTAYC 2 cut(s) 429, 462
BanII GRGCYC 1 cut(s) 122
Bbv12I GWGCWC 1 cut(s) 305
BciT130I CCWGG 2 cut(s) 473, 482
BclI TGATCA 1 cut(s) 408
BfaI CTAG 1 cut(s) 323
BfmI CTRYAG 1 cut(s) 669
Bme1390I CCNGG 2 cut(s) 473, 482
Bme18I GGWCC 1 cut(s) 393
BmgBI CACGTC 1 cut(s) 586
BmgT120I GGNCC 1 cut(s) 393
BmiI GGNNCC 1 cut(s) 395
BmrFI CCNGG 2 cut(s) 473, 482
BmrI ACTGGG 1 cut(s) 450
BmsI GCATC 1 cut(s) 232
BmuI ACTGGG 1 cut(s) 450
BpmI CTGGAG 2 cut(s) 225, 494
BpuEI CTTGAG 4 cut(s) 56, 373, 383, 542
BsaAI YACGTR 2 cut(s) 11, 134
BsaJI CCNNGG 1 cut(s) 247
BsaWI WCCGGW 1 cut(s) 580
Bsc4I CCNNNNNNNGG 1 cut(s) 107
Bse118I RCCGGY 1 cut(s) 100
Bse1I ACTGG 2 cut(s) 445, 636
BseAI TCCGGA 1 cut(s) 580
BseBI CCWGG 2 cut(s) 473, 482
BseDI CCNNGG 1 cut(s) 247
BseGI GGATG 3 cut(s) 247, 577, 735
BseLI CCNNNNNNNGG 1 cut(s) 107
BseMII CTCAG 1 cut(s) 301
BseNI ACTGG 2 cut(s) 445, 636
BseSI GKGCMC 1 cut(s) 305
BsiHKAI GWGCWC 1 cut(s) 305
BsiSI CCGG 2 cut(s) 101, 581
BslFI GGGAC 2 cut(s) 42, 138
BslI CCNNNNNNNGG 1 cut(s) 107
BsmFI GGGAC 2 cut(s) 42, 138
BsmI GAATGC 2 cut(s) 89, 318
Bsp1286I GDGCHC 2 cut(s) 122, 305
Bsp13I TCCGGA 1 cut(s) 580
Bsp143I GATC 3 cut(s) 380, 408, 711
BspACI CCGC 1 cut(s) 614
BspCNI CTCAG 1 cut(s) 300
BspEI TCCGGA 1 cut(s) 580
BspLI GGNNCC 1 cut(s) 395
BspPI GGATC 2 cut(s) 388, 706
BsrFI RCCGGY 1 cut(s) 100
BsrI ACTGG 2 cut(s) 445, 636
BssAI RCCGGY 1 cut(s) 100
BssECI CCNNGG 1 cut(s) 247
BssMI GATC 3 cut(s) 380, 408, 711
BssT1I CCWWGG 1 cut(s) 247
Bst2UI CCWGG 2 cut(s) 473, 482
Bst4CI ACNGT 1 cut(s) 419
BstBAI YACGTR 2 cut(s) 11, 134
BstC8I GCNNGC 1 cut(s) 676
BstDEI CTNAG 1 cut(s) 287
BstF5I GGATG 3 cut(s) 247, 577, 735
BstHHI GCGC 1 cut(s) 459
BstKTI GATC 3 cut(s) 383, 411, 714
BstMBI GATC 3 cut(s) 380, 408, 711
BstMWI GCNNNNNNNGC 2 cut(s) 371, 477
BstNI CCWGG 2 cut(s) 473, 482
BstNSI RCATGY 1 cut(s) 57
BstSCI CCNGG 2 cut(s) 471, 480
BstSFI CTRYAG 1 cut(s) 669
BstSLI GKGCMC 1 cut(s) 305
BstX2I RGATCY 2 cut(s) 380, 711
BstYI RGATCY 2 cut(s) 380, 711
BtrI CACGTC 1 cut(s) 586
BtsCI GGATG 3 cut(s) 247, 577, 735
BtsIMutI CAGTG 3 cut(s) 27, 432, 516
Cac8I GCNNGC 1 cut(s) 676
CfoI GCGC 1 cut(s) 459
Cfr10I RCCGGY 1 cut(s) 100
Cfr13I GGNCC 1 cut(s) 393
CseI GACGC 1 cut(s) 61
Csp6I GTAC 1 cut(s) 8
CviAII CATG 2 cut(s) 54, 722
CviJI RGCY 9 cut(s) 47, 100, 120, 217, 284, 365, 471, 480, 674
CviKI_1 RGCY 9 cut(s) 47, 100, 120, 217, 284, 365, 471, 480, 674
CviQI GTAC 1 cut(s) 8
DdeI CTNAG 1 cut(s) 287
DpnI GATC 3 cut(s) 382, 410, 713
DpnII GATC 3 cut(s) 380, 408, 711
Eco130I CCWWGG 1 cut(s) 247
Eco24I GRGCYC 1 cut(s) 122
Eco32I GATATC 1 cut(s) 273
Eco47I GGWCC 1 cut(s) 393
EcoO109I RGGNCCY 1 cut(s) 393
EcoRI GAATTC 1 cut(s) 199
EcoRII CCWGG 2 cut(s) 471, 480
EcoRV GATATC 1 cut(s) 273
EcoT14I CCWWGG 1 cut(s) 247
EcoT38I GRGCYC 1 cut(s) 122
ErhI CCWWGG 1 cut(s) 247
FaeI CATG 2 cut(s) 57, 725
FaiI YATR 8 cut(s) 44, 55, 234, 342, 647, 671, 699, 723
FaqI GGGAC 2 cut(s) 42, 138
FatI CATG 2 cut(s) 53, 721
FbaI TGATCA 1 cut(s) 408
FblI GTMKAC 1 cut(s) 130
FokI GGATG 2 cut(s) 254, 564
FriOI GRGCYC 1 cut(s) 122
FspBI CTAG 1 cut(s) 323
FspI TGCGCA 1 cut(s) 458
GlaI GCGC 1 cut(s) 458
GsuI CTGGAG 2 cut(s) 225, 494
HapII CCGG 2 cut(s) 101, 581
HgaI GACGC 1 cut(s) 61
HhaI GCGC 1 cut(s) 459
Hin1II CATG 2 cut(s) 57, 725
Hin6I GCGC 1 cut(s) 457
HinP1I GCGC 1 cut(s) 457
HinfI GANTC 4 cut(s) 508, 537, 574, 593
HpaII CCGG 2 cut(s) 101, 581
Hpy166II GTNNAC 2 cut(s) 131, 303
Hpy188I TCNGA 3 cut(s) 277, 290, 592
Hpy188III TCNNGA 5 cut(s) 67, 204, 323, 400, 581
Hpy8I GTNNAC 2 cut(s) 131, 303
Hpy99I CGWCG 1 cut(s) 356
HpyAV CCTTC 1 cut(s) 140
HpyCH4III ACNGT 1 cut(s) 419
HpyCH4IV ACGT 3 cut(s) 10, 133, 585
HpyCH4V TGCA 5 cut(s) 87, 303, 545, 686, 693
HpyF10VI GCNNNNNNNGC 2 cut(s) 371, 477
HpyF3I CTNAG 1 cut(s) 287
HpySE526I ACGT 3 cut(s) 10, 133, 585
Hsp92II CATG 2 cut(s) 57, 725
HspAI GCGC 1 cut(s) 457
Kpn2I TCCGGA 1 cut(s) 580
Ksp22I TGATCA 1 cut(s) 408
Kzo9I GATC 3 cut(s) 380, 408, 711
LweI GCATC 1 cut(s) 232
MaeI CTAG 1 cut(s) 323
MaeII ACGT 3 cut(s) 10, 133, 585
MaeIII GTNAC 1 cut(s) 664
MalI GATC 3 cut(s) 382, 410, 713
MboI GATC 3 cut(s) 380, 408, 711
MboII GAAGA 2 cut(s) 300, 721
MflI RGATCY 2 cut(s) 380, 711
MhlI GDGCHC 2 cut(s) 122, 305
MluCI AATT 8 cut(s) 158, 199, 294, 404, 485, 546, 563, 619
MlyI GAGTC 2 cut(s) 517, 587
MnlI CCTC 8 cut(s) 284, 296, 349, 397, 407, 521, 566, 720
MroI TCCGGA 1 cut(s) 580
MseI TTAA 1 cut(s) 566
MspI CCGG 2 cut(s) 101, 581
MspR9I CCNGG 2 cut(s) 473, 482
Mva1269I GAATGC 2 cut(s) 89, 318
MvaI CCWGG 2 cut(s) 473, 482
MwoI GCNNNNNNNGC 2 cut(s) 371, 477
NdeII GATC 3 cut(s) 380, 408, 711
NlaIII CATG 2 cut(s) 57, 725
NlaIV GGNNCC 1 cut(s) 395
NsbI TGCGCA 1 cut(s) 458
NspI RCATGY 1 cut(s) 57
PciI ACATGT 1 cut(s) 53
PctI GAATGC 2 cut(s) 89, 318
PfeI GAWTC 2 cut(s) 537, 574
PleI GAGTC 2 cut(s) 516, 587
PpsI GAGTC 2 cut(s) 516, 587
Ppu21I YACGTR 2 cut(s) 11, 134
PpuMI RGGWCCY 1 cut(s) 393
PscI ACATGT 1 cut(s) 53
PshBI ATTAAT 1 cut(s) 566
Psp5II RGGWCCY 1 cut(s) 393
Psp6I CCWGG 2 cut(s) 471, 480
PspGI CCWGG 2 cut(s) 471, 480
PspN4I GGNNCC 1 cut(s) 395
PspPI GGNCC 1 cut(s) 393
PspPPI RGGWCCY 1 cut(s) 393
PsuI RGATCY 2 cut(s) 380, 711
RsaI GTAC 1 cut(s) 9
RsaNI GTAC 1 cut(s) 8
SaqAI TTAA 1 cut(s) 566
Sau3AI GATC 3 cut(s) 380, 408, 711
Sau96I GGNCC 1 cut(s) 393
SchI GAGTC 2 cut(s) 517, 587
ScrFI CCNGG 2 cut(s) 473, 482
SduI GDGCHC 2 cut(s) 122, 305
SfaNI GCATC 1 cut(s) 232
SfcI CTRYAG 1 cut(s) 669
SinI GGWCC 1 cut(s) 393
SmlI CTYRAG 4 cut(s) 35, 388, 398, 557
SmoI CTYRAG 4 cut(s) 35, 388, 398, 557
Sse9I AATT 8 cut(s) 158, 199, 294, 404, 485, 546, 563, 619
SsiI CCGC 1 cut(s) 614
SspI AATATT 1 cut(s) 570
SspMI CTAG 1 cut(s) 323
StyD4I CCNGG 2 cut(s) 471, 480
StyI CCWWGG 1 cut(s) 247
TaaI ACNGT 1 cut(s) 419
TaiI ACGT 3 cut(s) 13, 136, 588
TaqI TCGA 2 cut(s) 66, 414
TasI AATT 8 cut(s) 158, 199, 294, 404, 485, 546, 563, 619
TfiI GAWTC 2 cut(s) 537, 574
Tru1I TTAA 1 cut(s) 566
Tru9I TTAA 1 cut(s) 566
TscAI CASTG 3 cut(s) 34, 439, 523
TspDTI ATGAA 3 cut(s) 31, 294, 566
TspRI CASTG 3 cut(s) 34, 439, 523
VneI GTGCAC 1 cut(s) 301
VpaK11BI GGWCC 1 cut(s) 393
VspI ATTAAT 1 cut(s) 566
XapI RAATTY 1 cut(s) 199
XbaI TCTAGA 1 cut(s) 322
XceI RCATGY 1 cut(s) 57
XmiI GTMKAC 1 cut(s) 130
XspI CTAG 1 cut(s) 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.