RchiOBHm_Chr7g0185341

F-box LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
5499476 .. 5500485
1010 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16539

Sequence Viewer

Length: 429 bp
ATGGGTGGGTGTCCCAGACTGTCCAAGGTTTCACTTTTCGGAAATAGAATTGGCAACTCTGCGGTTTTTGCTCTTTGGAATTTAGATGTAATTGCTTCATCTCCGATCCAGTACTCAGAGCAATTGGGTCGGCAACTTATATTACGACTCTGGAGTTTACGAGCTGTTGCAACATTGCTGATCTCGGTTTGGGATTTTTGGCAAATGGGTGTGTCTCTAAAAAGTAAAACCCTCAAGAGATTGGTGCTTGAGGAAATCAAAGGGATCACTGATACTGGGGTTGACCTTTTGCCCAAAATGTGTAGCTTGGAGCAACTCAATGTGTCTTCCTGTTTGTCAAACTATTGGCCACAACTGAAGATCACTGACATTGGAGGTGTGGCGATCCTCTGCGATTCAGACCCTCAAAGAATTGAGACTGTGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

142

Amino Acids

15.74

Weight (kDa)

8.41

Isoelectric Point (pI)

44.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 62
AclWI GGATC 3 cut(s) 100, 272, 379
AcoI YGGCCR 1 cut(s) 347
AcsI RAATTY 1 cut(s) 79
AcuI CTGAAG 1 cut(s) 377
AfaI GTAC 1 cut(s) 113
AluBI AGCT 2 cut(s) 164, 306
AluI AGCT 2 cut(s) 164, 306
Alw26I GTCTC 2 cut(s) 219, 410
AlwI GGATC 3 cut(s) 100, 272, 379
AoxI GGCC 1 cut(s) 347
ApoI RAATTY 1 cut(s) 79
BaeI ACNNNNGTAYC 2 cut(s) 264, 297
BalI TGGCCA 1 cut(s) 349
BbsI GAAGAC 1 cut(s) 318
BcgI CGANNNNNNTGC 2 cut(s) 110, 144
BcoDI GTCTC 2 cut(s) 219, 410
BmcAI AGTACT 1 cut(s) 113
BmrI ACTGGG 1 cut(s) 285
BmuI ACTGGG 1 cut(s) 285
BpiI GAAGAC 1 cut(s) 318
BpmI CTGGAG 1 cut(s) 172
BpuEI CTTGAG 2 cut(s) 218, 269
BsaJI CCNNGG 1 cut(s) 24
Bse1I ACTGG 2 cut(s) 109, 280
Bse3DI GCAATG 1 cut(s) 173
BseDI CCNNGG 1 cut(s) 24
BseMI GCAATG 1 cut(s) 173
BseMII CTCAG 1 cut(s) 129
BseNI ACTGG 2 cut(s) 109, 280
BshFI GGCC 1 cut(s) 349
BsmAI GTCTC 2 cut(s) 219, 410
BsnI GGCC 1 cut(s) 349
Bsp143I GATC 5 cut(s) 105, 180, 264, 360, 384
BspACI CCGC 1 cut(s) 62
BspANI GGCC 1 cut(s) 349
BspCNI CTCAG 1 cut(s) 128
BspPI GGATC 3 cut(s) 100, 272, 379
BsrDI GCAATG 1 cut(s) 173
BsrI ACTGG 2 cut(s) 109, 280
BssECI CCNNGG 1 cut(s) 24
BssMI GATC 5 cut(s) 105, 180, 264, 360, 384
BssT1I CCWWGG 1 cut(s) 24
Bst4CI ACNGT 2 cut(s) 21, 421
BstDEI CTNAG 1 cut(s) 115
BstKTI GATC 5 cut(s) 108, 183, 267, 363, 387
BstMAI GTCTC 2 cut(s) 219, 410
BstMBI GATC 5 cut(s) 105, 180, 264, 360, 384
BstMWI GCNNNNNNNGC 1 cut(s) 68
BstV2I GAAGAC 1 cut(s) 318
BsuRI GGCC 1 cut(s) 349
BtsIMutI CAGTG 2 cut(s) 267, 363
Csp6I GTAC 1 cut(s) 112
CviJI RGCY 3 cut(s) 164, 306, 349
CviKI_1 RGCY 3 cut(s) 164, 306, 349
CviQI GTAC 1 cut(s) 112
DdeI CTNAG 1 cut(s) 115
DpnI GATC 5 cut(s) 107, 182, 266, 362, 386
DpnII GATC 5 cut(s) 105, 180, 264, 360, 384
EaeI YGGCCR 1 cut(s) 347
Eco130I CCWWGG 1 cut(s) 24
Eco57I CTGAAG 1 cut(s) 377
EcoT14I CCWWGG 1 cut(s) 24
ErhI CCWWGG 1 cut(s) 24
FaiI YATR 1 cut(s) 140
GsuI CTGGAG 1 cut(s) 172
HaeIII GGCC 1 cut(s) 349
HincII GTYRAC 1 cut(s) 283
HindII GTYRAC 1 cut(s) 283
HinfI GANTC 2 cut(s) 147, 395
Hpy166II GTNNAC 2 cut(s) 158, 283
Hpy188I TCNGA 4 cut(s) 41, 105, 118, 400
Hpy188III TCNNGA 3 cut(s) 151, 235, 426
Hpy8I GTNNAC 2 cut(s) 158, 283
HpyCH4III ACNGT 2 cut(s) 21, 421
HpyCH4V TGCA 1 cut(s) 170
HpyF10VI GCNNNNNNNGC 1 cut(s) 68
HpyF3I CTNAG 1 cut(s) 115
Kzo9I GATC 5 cut(s) 105, 180, 264, 360, 384
LmnI GCTCC 1 cut(s) 310
LpnPI CCDG 5 cut(s) 28, 122, 136, 261, 343
MalI GATC 5 cut(s) 107, 182, 266, 362, 386
MboI GATC 5 cut(s) 105, 180, 264, 360, 384
MboII GAAGA 2 cut(s) 318, 370
MfeI CAATTG 1 cut(s) 122
MlsI TGGCCA 1 cut(s) 349
MluCI AATT 5 cut(s) 48, 79, 90, 122, 411
MluNI TGGCCA 1 cut(s) 349
MlyI GAGTC 1 cut(s) 141
MnlI CCTC 5 cut(s) 242, 244, 368, 398, 414
Mox20I TGGCCA 1 cut(s) 349
MscI TGGCCA 1 cut(s) 349
Msp20I TGGCCA 1 cut(s) 349
MunI CAATTG 1 cut(s) 122
MwoI GCNNNNNNNGC 1 cut(s) 68
NdeII GATC 5 cut(s) 105, 180, 264, 360, 384
PfeI GAWTC 1 cut(s) 395
PflFI GACNNNGTC 1 cut(s) 421
PleI GAGTC 1 cut(s) 141
PpsI GAGTC 1 cut(s) 141
PsyI GACNNNGTC 1 cut(s) 421
RsaI GTAC 1 cut(s) 113
RsaNI GTAC 1 cut(s) 112
Sau3AI GATC 5 cut(s) 105, 180, 264, 360, 384
ScaI AGTACT 1 cut(s) 113
SchI GAGTC 1 cut(s) 141
SetI ASST 5 cut(s) 30, 166, 288, 308, 379
SmlI CTYRAG 2 cut(s) 233, 248
SmoI CTYRAG 2 cut(s) 233, 248
Sse9I AATT 5 cut(s) 48, 79, 90, 122, 411
SsiI CCGC 1 cut(s) 62
StyI CCWWGG 1 cut(s) 24
TaaI ACNGT 2 cut(s) 21, 421
TasI AATT 5 cut(s) 48, 79, 90, 122, 411
TatI WGTACW 1 cut(s) 111
TfiI GAWTC 1 cut(s) 395
TscAI CASTG 2 cut(s) 274, 370
TspDTI ATGAA 1 cut(s) 87
TspRI CASTG 2 cut(s) 274, 370
Tth111I GACNNNGTC 1 cut(s) 421
XapI RAATTY 1 cut(s) 79
ZrmI AGTACT 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.