FvH4_5g12160

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0001041
Physical Location & Seq
Forward (+)
6857648 .. 6859286
1639 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g12160.t1

Sequence Viewer

Length: 1101 bp
ATGTCTGCCCAAACCGAAGAAACAGGGCCAATTTCTCTTCTGAGCGAAGATTTACTGTCCTTGATCCTCAACAACGTCACCGACCAAGAACATAGAAACTGGTGCTCCGAGGTTTGCAAGCAATGGCTTAAACTCGAAGGTCTAAGCCGATCATCACTCTCCGCTCGCAAACCCGAGTTTCCTCTTGCTATACTGAACAGGTTCCCGAATCTTGTCCAATTCCAAACCACCCAACTCACGACAGATTCCGACCTCGAACTCCTCGCCCGGAAATGTCCCAAACTTGAGGAAGTCAAGGTGGTGGATTTCACCTCATGCCAACAAGGCTTCTTGGGTCGGAAAGGCATGTCGGCATTGGGATATGGTTGTCCTAAATTGTCCAAGGTCTCGCTGATTGGGGACAAGATTGGAAATGCTGCCGTTGTGGAGCTTGTGAATGTTGCGCGGAGCTTGTCGTCATTGGTATTGGGGCATAATTTGATTGGGGATATTGCTCTCAGAGCCATTGCATGGTCTTCGGTTACGATTCTCGAGTTGAAGAGCTGCTGCAATGTTACCGATGACGGGTTGGGTTGTTTGGCTAGCGGGTTTACCTTGAAAAGACTCAAGACATTGGTGGTAAAGAGGTGTAAGGTCACGGATGATGGGGTGAAGAGTTTGAAGAAAATGCGCAGCTTGGAGAAGCTGAGTTTGTGTTGGTGTACCGGAGAGATTACAGATGTTGGAGGAATGGCGATATCTGCGATTCGGAATCTCAAGGAGTTGAAATTGAAGGGGATATATGGCGTGTCAGACCTTACCGTTTCCGCGCTTGCATTTTGCAAGAAGTTGGAAGTGCTTGATTTAAGTGGCTGTGAAGGGGTGACAGGACCTGGCATTCGTGCATTTTCAAGTCACCAAGGCTTGAGGCGCCTTGTGTTGCTCGGTTTGAGGAGTTTTGGTCTTTCTGATGTAGAGACCTTGGTGCTTGGGTGCCCGTCGTTGGACGTTGATTCTGTTGTGGTGGAAGAAAGATGGAGGAAGGATCCTACTTGGAGAGATGAGTTGATGCATTGGAAAACTAGATTAGTTCTCAAGTTCTCTAAATATAAGCATCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

367

Amino Acids

40.32

Weight (kDa)

8.86

Isoelectric Point (pI)

36.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 671
AccB1I GGYRCC 2 cut(s) 909, 972
AccB7I CCANNNNNTGG 1 cut(s) 510
AccBSI CCGCTC 1 cut(s) 164
AccII CGCG 2 cut(s) 445, 809
AciI CCGC 4 cut(s) 162, 445, 585, 807
AclWI GGATC 3 cut(s) 58, 1019, 1032
AcyI GRCGYC 1 cut(s) 910
AfaI GTAC 1 cut(s) 703
AfiI CCNNNNNNNGG 3 cut(s) 510, 564, 982
AgsI TTSAA 6 cut(s) 538, 598, 661, 766, 772, 891
AjnI CCWGG 1 cut(s) 871
AluBI AGCT 5 cut(s) 430, 450, 543, 675, 685
AluI AGCT 5 cut(s) 430, 450, 543, 675, 685
Alw21I GWGCWC 1 cut(s) 107
Alw26I GTCTC 2 cut(s) 391, 950
AlwI GGATC 3 cut(s) 58, 1019, 1032
AlwNI CAGNNNCTG 1 cut(s) 872
Ama87I CYCGRG 2 cut(s) 173, 530
AoxI GGCC 1 cut(s) 26
ApeKI GCWGC 4 cut(s) 416, 543, 546, 672
ArsI GACNNNNNNTTYG 2 cut(s) 861, 893
Asp700I GAANNNNTTC 1 cut(s) 200
AspLEI GCGC 4 cut(s) 445, 672, 811, 912
AspS9I GGNCC 2 cut(s) 26, 869
AsuC2I CCSGG 1 cut(s) 268
AsuHPI GGTGA 5 cut(s) 70, 301, 661, 874, 887
AsuNHI GCTAGC 1 cut(s) 581
AvaI CYCGRG 2 cut(s) 173, 530
AvaII GGWCC 1 cut(s) 869
BaeGI GKGCMC 1 cut(s) 977
BamHI GGATCC 1 cut(s) 1024
BanI GGYRCC 2 cut(s) 909, 972
BbsI GAAGAC 1 cut(s) 507
Bbv12I GWGCWC 1 cut(s) 107
BbvI GCAGC 4 cut(s) 403, 530, 533, 684
BccI CCATC 2 cut(s) 638, 1008
BceAI ACGGC 1 cut(s) 404
BcgI CGANNNNNNTGC 2 cut(s) 498, 532
BciT130I CCWGG 1 cut(s) 873
BcnI CCSGG 1 cut(s) 268
BcoDI GTCTC 2 cut(s) 391, 950
BfaI CTAG 3 cut(s) 582, 1062, 1099
BfoI RGCGCY 1 cut(s) 913
BglI GCCNNNNNGGC 1 cut(s) 324
BisI GCNGC 4 cut(s) 417, 544, 547, 673
BlsI GCNGC 4 cut(s) 418, 545, 548, 674
Bme1390I CCNGG 2 cut(s) 268, 873
Bme18I GGWCC 1 cut(s) 869
BmeT110I CYCGRG 2 cut(s) 173, 530
BmgT120I GGNCC 2 cut(s) 26, 869
BmiI GGNNCC 4 cut(s) 203, 911, 974, 1026
BmrFI CCNGG 2 cut(s) 268, 873
BmsI GCATC 1 cut(s) 1038
BmtI GCTAGC 1 cut(s) 585
BpiI GAAGAC 1 cut(s) 507
BpuEI CTTGAG 5 cut(s) 305, 590, 740, 925, 1058
BpuMI CCSGG 1 cut(s) 268
BsaHI GRCGYC 1 cut(s) 910
BsaI GGTCTC 2 cut(s) 391, 950
BsaJI CCNNGG 4 cut(s) 108, 381, 898, 960
BsaWI WCCGGW 1 cut(s) 704
BsaXI ACNNNNNCTCC 4 cut(s) 89, 119, 925, 955
Bsc4I CCNNNNNNNGG 3 cut(s) 510, 564, 982
Bse1I ACTGG 1 cut(s) 104
Bse3DI GCAATG 3 cut(s) 128, 504, 556
BseBI CCWGG 1 cut(s) 873
BseDI CCNNGG 4 cut(s) 108, 381, 898, 960
BseGI GGATG 1 cut(s) 646
BseLI CCNNNNNNNGG 3 cut(s) 510, 564, 982
BseMI GCAATG 3 cut(s) 128, 504, 556
BseMII CTCAG 3 cut(s) 32, 511, 677
BseNI ACTGG 1 cut(s) 104
BseRI GAGGAG 2 cut(s) 251, 946
BseSI GKGCMC 1 cut(s) 977
BseXI GCAGC 4 cut(s) 403, 530, 533, 684
Bsh1236I CGCG 2 cut(s) 445, 809
BshFI GGCC 1 cut(s) 28
BshNI GGYRCC 2 cut(s) 909, 972
BsiHKAI GWGCWC 1 cut(s) 107
BsiHKCI CYCGRG 2 cut(s) 173, 530
BsiSI CCGG 2 cut(s) 268, 705
BslFI GGGAC 2 cut(s) 261, 413
BslI CCNNNNNNNGG 3 cut(s) 510, 564, 982
BsmAI GTCTC 2 cut(s) 391, 950
BsmFI GGGAC 2 cut(s) 261, 413
BsmI GAATGC 1 cut(s) 876
BsnI GGCC 1 cut(s) 28
Bso31I GGTCTC 2 cut(s) 391, 950
BsoBI CYCGRG 2 cut(s) 173, 530
Bsp1286I GDGCHC 2 cut(s) 107, 977
Bsp143I GATC 3 cut(s) 63, 149, 1024
BspACI CCGC 4 cut(s) 162, 445, 585, 807
BspANI GGCC 1 cut(s) 28
BspCNI CTCAG 3 cut(s) 33, 510, 678
BspFNI CGCG 2 cut(s) 445, 809
BspLI GGNNCC 4 cut(s) 203, 911, 974, 1026
BspOI GCTAGC 1 cut(s) 585
BspPI GGATC 3 cut(s) 58, 1019, 1032
BspQI GCTCTTC 1 cut(s) 533
BspT107I GGYRCC 2 cut(s) 909, 972
BspTNI GGTCTC 2 cut(s) 391, 950
BsrBI CCGCTC 1 cut(s) 164
BsrDI GCAATG 3 cut(s) 128, 504, 556
BsrI ACTGG 1 cut(s) 104
BssECI CCNNGG 4 cut(s) 108, 381, 898, 960
BssMI GATC 3 cut(s) 63, 149, 1024
BssNI GRCGYC 1 cut(s) 910
BssT1I CCWWGG 3 cut(s) 381, 898, 960
Bst2UI CCWGG 1 cut(s) 873
Bst4CI ACNGT 2 cut(s) 57, 802
Bst6I CTCTTC 3 cut(s) 42, 533, 647
BstACI GRCGYC 1 cut(s) 910
BstC8I GCNNGC 4 cut(s) 119, 166, 583, 813
BstDEI CTNAG 4 cut(s) 41, 143, 497, 686
BstF5I GGATG 1 cut(s) 646
BstFNI CGCG 2 cut(s) 445, 809
BstH2I RGCGCY 1 cut(s) 913
BstHHI GCGC 4 cut(s) 445, 672, 811, 912
BstKTI GATC 3 cut(s) 66, 152, 1027
BstMAI GTCTC 2 cut(s) 391, 950
BstMBI GATC 3 cut(s) 63, 149, 1024
BstMWI GCNNNNNNNGC 4 cut(s) 324, 500, 740, 909
BstNI CCWGG 1 cut(s) 873
BstNSI RCATGY 1 cut(s) 349
BstSCI CCNGG 2 cut(s) 266, 871
BstSLI GKGCMC 1 cut(s) 977
BstUI CGCG 2 cut(s) 445, 809
BstV1I GCAGC 4 cut(s) 403, 530, 533, 684
BstV2I GAAGAC 1 cut(s) 507
BstX2I RGATCY 1 cut(s) 1024
BstYI RGATCY 1 cut(s) 1024
BsuRI GGCC 1 cut(s) 28
BtsCI GGATG 1 cut(s) 646
Cac8I GCNNGC 4 cut(s) 119, 166, 583, 813
CaiI CAGNNNCTG 1 cut(s) 872
CfoI GCGC 4 cut(s) 445, 672, 811, 912
Cfr13I GGNCC 2 cut(s) 26, 869
Csp6I GTAC 1 cut(s) 702
CviAII CATG 3 cut(s) 315, 346, 510
CviQI GTAC 1 cut(s) 702
DdeI CTNAG 4 cut(s) 41, 143, 497, 686
DinI GGCGCC 1 cut(s) 911
DpnI GATC 3 cut(s) 65, 151, 1026
DpnII GATC 3 cut(s) 63, 149, 1024
Eam1104I CTCTTC 3 cut(s) 42, 533, 647
EarI CTCTTC 3 cut(s) 42, 533, 647
Eco130I CCWWGG 3 cut(s) 381, 898, 960
Eco31I GGTCTC 2 cut(s) 391, 950
Eco32I GATATC 1 cut(s) 738
Eco47I GGWCC 1 cut(s) 869
Eco88I CYCGRG 2 cut(s) 173, 530
EcoO109I RGGNCCY 1 cut(s) 869
EcoRII CCWGG 1 cut(s) 871
EcoRV GATATC 1 cut(s) 738
EcoT14I CCWWGG 3 cut(s) 381, 898, 960
EcoT22I ATGCAT 1 cut(s) 1053
EgeI GGCGCC 1 cut(s) 911
EheI GGCGCC 1 cut(s) 911
ErhI CCWWGG 3 cut(s) 381, 898, 960
FaeI CATG 3 cut(s) 318, 349, 513
FaqI GGGAC 2 cut(s) 261, 413
FatI CATG 3 cut(s) 314, 345, 509
FauI CCCGC 1 cut(s) 578
Fnu4HI GCNGC 4 cut(s) 417, 544, 547, 673
FokI GGATG 1 cut(s) 653
Fsp4HI GCNGC 4 cut(s) 417, 544, 547, 673
FspBI CTAG 3 cut(s) 582, 1062, 1099
FspI TGCGCA 1 cut(s) 671
GlaI GCGC 4 cut(s) 444, 671, 810, 911
GluI GCNGC 4 cut(s) 417, 544, 547, 673
HaeII RGCGCY 1 cut(s) 913
HaeIII GGCC 1 cut(s) 28
HapII CCGG 2 cut(s) 268, 705
HhaI GCGC 4 cut(s) 445, 672, 811, 912
Hin1I GRCGYC 1 cut(s) 910
Hin1II CATG 3 cut(s) 318, 349, 513
Hin6I GCGC 4 cut(s) 443, 670, 809, 910
HinP1I GCGC 4 cut(s) 443, 670, 809, 910
HinfI GANTC 7 cut(s) 208, 245, 526, 603, 745, 751, 992
HpaII CCGG 2 cut(s) 268, 705
HphI GGTGA 5 cut(s) 70, 301, 661, 874, 887
Hpy166II GTNNAC 2 cut(s) 591, 702
Hpy188I TCNGA 8 cut(s) 42, 109, 250, 339, 500, 750, 793, 949
Hpy188III TCNNGA 4 cut(s) 205, 238, 530, 607
Hpy8I GTNNAC 2 cut(s) 591, 702
Hpy99I CGWCG 1 cut(s) 982
HpyAV CCTTC 4 cut(s) 131, 766, 851, 1015
HpyCH4III ACNGT 2 cut(s) 57, 802
HpyCH4IV ACGT 2 cut(s) 75, 987
HpyCH4V TGCA 7 cut(s) 117, 509, 549, 815, 822, 884, 1051
HpyF10VI GCNNNNNNNGC 4 cut(s) 324, 500, 740, 909
HpyF3I CTNAG 4 cut(s) 41, 143, 497, 686
HpySE526I ACGT 2 cut(s) 75, 987
Hsp92I GRCGYC 1 cut(s) 910
Hsp92II CATG 3 cut(s) 318, 349, 513
HspAI GCGC 4 cut(s) 443, 670, 809, 910
KasI GGCGCC 1 cut(s) 909
Kzo9I GATC 3 cut(s) 63, 149, 1024
LguI GCTCTTC 1 cut(s) 533
LmnI GCTCC 3 cut(s) 110, 427, 447
LpnPI CCDG 8 cut(s) 9, 85, 184, 281, 718, 852, 858, 885
Lsp1109I GCAGC 4 cut(s) 403, 530, 533, 684
LweI GCATC 1 cut(s) 1038
MaeI CTAG 3 cut(s) 582, 1062, 1099
MaeII ACGT 2 cut(s) 75, 987
MaeIII GTNAC 6 cut(s) 76, 520, 553, 634, 862, 893
MalI GATC 3 cut(s) 65, 151, 1026
MbiI CCGCTC 1 cut(s) 164
MboI GATC 3 cut(s) 63, 149, 1024
MboII GAAGA 8 cut(s) 29, 29, 59, 507, 550, 664, 673, 1019
MflI RGATCY 1 cut(s) 1024
MhlI GDGCHC 2 cut(s) 107, 977
MluCI AATT 5 cut(s) 30, 218, 374, 475, 767
Mly113I GGCGCC 1 cut(s) 910
MlyI GAGTC 1 cut(s) 597
MmeI TCCRAC 5 cut(s) 273, 317, 703, 810, 963
Mph1103I ATGCAT 1 cut(s) 1053
MroXI GAANNNNTTC 1 cut(s) 200
MseI TTAA 2 cut(s) 129, 845
MspI CCGG 2 cut(s) 268, 705
MspR9I CCNGG 2 cut(s) 268, 873
Mva1269I GAATGC 1 cut(s) 876
MvaI CCWGG 1 cut(s) 873
MvnI CGCG 2 cut(s) 445, 809
MwoI GCNNNNNNNGC 4 cut(s) 324, 500, 740, 909
NarI GGCGCC 1 cut(s) 910
NciI CCSGG 1 cut(s) 268
NdeII GATC 3 cut(s) 63, 149, 1024
NheI GCTAGC 1 cut(s) 581
NlaIII CATG 3 cut(s) 318, 349, 513
NlaIV GGNNCC 4 cut(s) 203, 911, 974, 1026
NmuCI GTSAC 4 cut(s) 76, 634, 862, 893
NsbI TGCGCA 1 cut(s) 671
NsiI ATGCAT 1 cut(s) 1053
NspI RCATGY 1 cut(s) 349
PaeR7I CTCGAG 1 cut(s) 530
PciSI GCTCTTC 1 cut(s) 533
PctI GAATGC 1 cut(s) 876
PdmI GAANNNNTTC 1 cut(s) 200
PfeI GAWTC 6 cut(s) 208, 245, 526, 745, 751, 992
PflMI CCANNNNNTGG 1 cut(s) 510
PkrI GCNGC 4 cut(s) 418, 545, 548, 674
PleI GAGTC 1 cut(s) 597
PluTI GGCGCC 1 cut(s) 913
PpsI GAGTC 1 cut(s) 597
PpuMI RGGWCCY 1 cut(s) 869
Psp5II RGGWCCY 1 cut(s) 869
Psp6I CCWGG 1 cut(s) 871
PspGI CCWGG 1 cut(s) 871
PspN4I GGNNCC 4 cut(s) 203, 911, 974, 1026
PspPI GGNCC 2 cut(s) 26, 869
PspPPI RGGWCCY 1 cut(s) 869
PstNI CAGNNNCTG 1 cut(s) 872
PsuI RGATCY 1 cut(s) 1024
RsaI GTAC 1 cut(s) 703
RsaNI GTAC 1 cut(s) 702
SapI GCTCTTC 1 cut(s) 533
SaqAI TTAA 2 cut(s) 129, 845
SatI GCNGC 4 cut(s) 417, 544, 547, 673
Sau3AI GATC 3 cut(s) 63, 149, 1024
Sau96I GGNCC 2 cut(s) 26, 869
SchI GAGTC 1 cut(s) 597
ScrFI CCNGG 2 cut(s) 268, 873
SduI GDGCHC 2 cut(s) 107, 977
SfaNI GCATC 1 cut(s) 1038
SfoI GGCGCC 1 cut(s) 911
Sfr274I CTCGAG 1 cut(s) 530
SinI GGWCC 1 cut(s) 869
SlaI CTCGAG 1 cut(s) 530
SmlI CTYRAG 6 cut(s) 284, 530, 605, 755, 904, 1073
SmoI CTYRAG 6 cut(s) 284, 530, 605, 755, 904, 1073
Sse9I AATT 5 cut(s) 30, 218, 374, 475, 767
SsiI CCGC 4 cut(s) 162, 445, 585, 807
SspDI GGCGCC 1 cut(s) 909
SspMI CTAG 3 cut(s) 582, 1062, 1099
StyD4I CCNGG 2 cut(s) 266, 871
StyI CCWWGG 3 cut(s) 381, 898, 960
TaaI ACNGT 2 cut(s) 57, 802
TaiI ACGT 2 cut(s) 78, 990
TaqI TCGA 3 cut(s) 135, 255, 531
TasI AATT 5 cut(s) 30, 218, 374, 475, 767
TfiI GAWTC 6 cut(s) 208, 245, 526, 745, 751, 992
Tru1I TTAA 2 cut(s) 129, 845
Tru9I TTAA 2 cut(s) 129, 845
TseFI GTSAC 4 cut(s) 76, 634, 862, 893
TseI GCWGC 4 cut(s) 416, 543, 546, 672
Tsp45I GTSAC 4 cut(s) 76, 634, 862, 893
TspGWI ACGGA 1 cut(s) 653
Van91I CCANNNNNTGG 1 cut(s) 510
VpaK11BI GGWCC 1 cut(s) 869
XceI RCATGY 1 cut(s) 349
XhoI CTCGAG 1 cut(s) 530
XmnI GAANNNNTTC 1 cut(s) 200
XspI CTAG 3 cut(s) 582, 1062, 1099
Zsp2I ATGCAT 1 cut(s) 1053
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.