Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001041

Physical Location & Seq

Genomic Coordinates Reverse (-)

5685265 .. 5686383

Gene Structure 1119 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG073700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGTTTCACATACAAAAGAATTAGGGAAACTTTTCTTGATGAGCGATGATTTTGTTGGTCTAATCATTAGCAAGGTTAGCATCAAAGATGATAGAAAATCGTTCTCTGAGGTCTGCAAGCAATGGTTTAAAGTGGAAGGTCTAAGCCGATCATCACTGCGCGTTTTCGCTGACCGACCTGGCTTTTCCCTGGCTGCACTCACTAGATTCCCAAATCTAGTTCATCTGGAAATATTTGAGCTTCAGACGGACATCGAAATAGAAATCATAGCCCAGACATGCCGCAAAATAGAGAGCATCACGGTTTTCTGCTTTGATGCGCATCAGGAAGGTCATGGTGGTATTTTGAGGGGAAAAGGACTAATGGCTTTGGGAAATGGATGTCCCAAATTGTCCAAAGTTATGCTTGCTGGGGAAGACACGGTCCGGGATTCTGGAATTATTGCACTTCTACATTCAAAACATAGCTTTGACGCTTTGGTTTTCTTATCTAATAGCTTGATCACGGATCAAGCCCTCAGAGCAATTGGTTTGGCATCTTCAATTAGCATTTTGGAGTTGGTAGGTTGTTCCGGCATCAAGGATATGGGATTGGGGTTTTTGGCAAATGGGTCTACCTCGAAAACCCTCAAGAAATTGGTCCTAAATCTTTGCCGGGGAATCACTGATACTGGGGTCAAGCTTTTGCAGAAAATGTGTAGCTTGGAGCACCTGGAATTGTCCTACTGTGGGAGGAGAGGAGAAATCACTGATATTGGAGGTGTGGCAATCTCTGCAATTCAAACGCTCAAGGAAATAAAATTGGATGGTCTTCTGGGTGTATCAGACCCTACCATGCTTGCTCTTGCCCAGAATTGCTGCAACTTGGAAATACTTGATTTAGAGGGATGTCAAGGTGTAACTGGAGCTGGCATTCGTGCATTTTCAAGTCATCAGTGCTTGAAACGCCTTGTGTTGCTAGGCTTAAGGAACTTTAATCTCTCTGATGTGGAGAGCGTAGCGTTTGGATGCCCCTCATTGGAGTCGGAGTCTGTTGTGGTGGATTCACTGTGGAAGCTGGATGCAACATTGATGCAGGACAACACTAGAAGAGTCCTCAAATTCACTGAAATGTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_6

Protein Analysis

372

Amino Acids

40.43

Weight (kDa)

6.46

Isoelectric Point (pI)

31.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box_5	PF18511	14 - 51	6.6e-07	F-box
DUF7885	PF25372	120 - 257	4e-11	Leucine Rich Repeat Domain of unknown function (DUF7885)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001041)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40700 FvH4_5g10370 FvH4_5g12160 FvH4_5g12180 FvH4_5g12190 FvH4_5g12200 FvH4_5g12210 FvH4_5g12211
rosa_chinensis	RchiOBHm_Chr5g0073461 RchiOBHm_Chr5g0073471 RchiOBHm_Chr7g0185341 RchiOBHm_Chr7g0185381 RchiOBHm_Chr7g0185401
rosa_laevigata	RLG00000004916 RLG00000004917 RLG00000004921 RLG00000019401 RLG00000036387
rosa_multiflora	Rmu_co8366929.1_g000001 Rmu_co8392105.1_g000001 Rmu_sc0001761.1_g000011 Rmu_sc0001761.1_g000012 Rmu_sc0001761.1_g000013 Rmu_sc0001761.1_g000016 Rmu_sc0004670.1_g000010 Rmu_sc0008496.1_g000005 Rmu_sc0023242.1_g000005 Rmu_sc0023242.1_g000006 Rmu_ssc0000226.1_g000026 Rmu_ssc0000226.1_g000027
rosa_roxburghii	Rroxscaffold_1G00007790 Rroxscaffold_1G00017220 Rroxscaffold_2G00110040 Rroxscaffold_3G00269000 Rroxscaffold_3G00269010
rosa_rugosa	Rorug05G0423700 Rorug06G0468100 Rorug06G0468700
rosa_samantha	Rh2CG354600 Rh2CG354700 Rh2DG393800 Rh5AG481000 Rh5CG455400 Rh5CG524900 Rh5DG514100 Rh7AG074000 Rh7AG074100 Rh7AG074200 Rh7AG074600 Rh7BG072600 Rh7BG073200 Rh7BG073300 Rh7BG073400 Rh7DG073200 Rh7DG073600 Rh7DG073700 Rh7DG073800
rosa_wichuraiana	Rw2G030200 Rw7G006080 Rw7G006120 Rw7G006130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	321
AccI	GTMKAC	1 cut(s)	614
AccII	CGCG	1 cut(s)	162
AciI	CCGC	1 cut(s)	283
AclWI	GGATC	1 cut(s)	516
AcsI	RAATTY	1 cut(s)	1100
AcuI	CTGAAG	1 cut(s)	227
AfiI	CCNNNNNNNGG	2 cut(s)	729, 1018
AflII	CTTAAG	1 cut(s)	964
AgsI	TTSAA	5 cut(s)	459, 543, 782, 927, 943
AjnI	CCWGG	3 cut(s)	178, 189, 711
AluBI	AGCT	7 cut(s)	241, 468, 498, 682, 702, 908, 1057
AluI	AGCT	7 cut(s)	241, 468, 498, 682, 702, 908, 1057
Alw21I	GWGCWC	1 cut(s)	711
AlwI	GGATC	1 cut(s)	516
ApeKI	GCWGC	2 cut(s)	194, 858
ApoI	RAATTY	1 cut(s)	1100
Asp700I	GAANNNNTTC	1 cut(s)	32
AspLEI	GCGC	2 cut(s)	162, 322
AspS9I	GGNCC	2 cut(s)	424, 640
AsuC2I	CCSGG	2 cut(s)	428, 656
AvaII	GGWCC	2 cut(s)	424, 640
BaeI	ACNNNNGTAYC	2 cut(s)	660, 693
BbsI	GAAGAC	2 cut(s)	423, 803
Bbv12I	GWGCWC	1 cut(s)	711
BbvI	GCAGC	2 cut(s)	181, 845
BccI	CCATC	1 cut(s)	800
BciT130I	CCWGG	3 cut(s)	180, 191, 713
BclI	TGATCA	1 cut(s)	501
BcnI	CCSGG	2 cut(s)	428, 656
BfaI	CTAG	4 cut(s)	204, 218, 959, 1086
BfrI	CTTAAG	1 cut(s)	964
BisI	GCNGC	3 cut(s)	195, 283, 859
BlsI	GCNGC	3 cut(s)	196, 284, 860
Bme1390I	CCNGG	5 cut(s)	180, 191, 428, 656, 713
Bme18I	GGWCC	2 cut(s)	424, 640
BmgT120I	GGNCC	2 cut(s)	424, 640
BmrFI	CCNGG	5 cut(s)	180, 191, 428, 656, 713
BmrI	ACTGGG	1 cut(s)	681
BmsI	GCATC	9 cut(s)	90, 306, 307, 331, 545, 585, 998, 1051, 1062
BmuI	ACTGGG	1 cut(s)	681
BpiI	GAAGAC	2 cut(s)	423, 803
BpmI	CTGGAG	1 cut(s)	924
BpuEI	CTTGAG	2 cut(s)	614, 773
BpuMI	CCSGG	2 cut(s)	428, 656
BsaBI	GATNNNNATC	1 cut(s)	321
BsaJI	CCNNGG	2 cut(s)	189, 655
BsaXI	ACNNNNNCTCC	2 cut(s)	1013, 1043
Bsc4I	CCNNNNNNNGG	2 cut(s)	729, 1018
Bse1I	ACTGG	2 cut(s)	676, 907
Bse3DI	GCAATG	1 cut(s)	128
Bse8I	GATNNNNATC	1 cut(s)	321
BseBI	CCWGG	3 cut(s)	180, 191, 713
BseDI	CCNNGG	2 cut(s)	189, 655
BseGI	GGATG	5 cut(s)	386, 811, 893, 1013, 1066
BseJI	GATNNNNATC	1 cut(s)	321
BseLI	CCNNNNNNNGG	2 cut(s)	729, 1018
BseMI	GCAATG	1 cut(s)	128
BseMII	CTCAG	2 cut(s)	99, 532
BseNI	ACTGG	2 cut(s)	676, 907
BseRI	GAGGAG	2 cut(s)	748, 753
BseXI	GCAGC	2 cut(s)	181, 845
BseYI	CCCAGC	1 cut(s)	410
BsgI	GTGCAG	1 cut(s)	180
Bsh1236I	CGCG	1 cut(s)	162
BsiHKAI	GWGCWC	1 cut(s)	711
BsiSI	CCGG	3 cut(s)	427, 573, 655
BslFI	GGGAC	1 cut(s)	369
BslI	CCNNNNNNNGG	2 cut(s)	729, 1018
BsmFI	GGGAC	1 cut(s)	369
BsmI	GAATGC	1 cut(s)	912
Bsp1286I	GDGCHC	1 cut(s)	711
Bsp143I	GATC	3 cut(s)	149, 501, 508
BspACI	CCGC	1 cut(s)	283
BspCNI	CTCAG	2 cut(s)	100, 531
BspFNI	CGCG	1 cut(s)	162
BspPI	GGATC	1 cut(s)	516
BspTI	CTTAAG	1 cut(s)	964
BsrDI	GCAATG	1 cut(s)	128
BsrI	ACTGG	2 cut(s)	676, 907
BssECI	CCNNGG	2 cut(s)	189, 655
BssMI	GATC	3 cut(s)	149, 501, 508
Bst2UI	CCWGG	3 cut(s)	180, 191, 713
Bst4CI	ACNGT	4 cut(s)	304, 424, 728, 1050
Bst6I	CTCTTC	1 cut(s)	1084
BstAFI	CTTAAG	1 cut(s)	964
BstAPI	GCANNNNNTGC	1 cut(s)	773
BstC8I	GCNNGC	4 cut(s)	119, 408, 840, 910
BstDEI	CTNAG	3 cut(s)	108, 143, 518
BstF5I	GGATG	5 cut(s)	386, 811, 893, 1013, 1066
BstFNI	CGCG	1 cut(s)	162
BstHHI	GCGC	2 cut(s)	162, 322
BstKTI	GATC	3 cut(s)	152, 504, 511
BstMBI	GATC	3 cut(s)	149, 501, 508
BstMWI	GCNNNNNNNGC	4 cut(s)	78, 521, 773, 945
BstNI	CCWGG	3 cut(s)	180, 191, 713
BstNSI	RCATGY	1 cut(s)	282
BstSCI	CCNGG	5 cut(s)	178, 189, 426, 654, 711
BstUI	CGCG	1 cut(s)	162
BstV1I	GCAGC	2 cut(s)	181, 845
BstV2I	GAAGAC	2 cut(s)	423, 803
BtgZI	GCGATG	1 cut(s)	60
BtsCI	GGATG	5 cut(s)	386, 811, 893, 1013, 1066
BtsI	GCAGTG	1 cut(s)	155
BtsIMutI	CAGTG	6 cut(s)	155, 663, 747, 941, 1046, 1104
Cac8I	GCNNGC	4 cut(s)	119, 408, 840, 910
CfoI	GCGC	2 cut(s)	162, 322
Cfr13I	GGNCC	2 cut(s)	424, 640
CpoI	CGGWCCG	1 cut(s)	424
CseI	GACGC	1 cut(s)	482
CspI	CGGWCCG	1 cut(s)	424
CviAII	CATG	3 cut(s)	279, 335, 835
DdeI	CTNAG	3 cut(s)	108, 143, 518
DpnI	GATC	3 cut(s)	151, 503, 510
DpnII	GATC	3 cut(s)	149, 501, 508
DraI	TTTAAA	1 cut(s)	130
Eam1104I	CTCTTC	1 cut(s)	1084
EarI	CTCTTC	1 cut(s)	1084
Eco47I	GGWCC	2 cut(s)	424, 640
Eco57I	CTGAAG	1 cut(s)	227
EcoRII	CCWGG	3 cut(s)	178, 189, 711
FaeI	CATG	3 cut(s)	282, 338, 838
FaiI	YATR	8 cut(s)	12, 269, 280, 336, 404, 465, 587, 836
FalI	AAGNNNNNCTT	2 cut(s)	390, 422
FaqI	GGGAC	1 cut(s)	369
FatI	CATG	3 cut(s)	278, 334, 834
FbaI	TGATCA	1 cut(s)	501
FblI	GTMKAC	1 cut(s)	614
Fnu4HI	GCNGC	3 cut(s)	195, 283, 859
FokI	GGATG	5 cut(s)	393, 818, 900, 1020, 1073
Fsp4HI	GCNGC	3 cut(s)	195, 283, 859
FspAI	RTGCGCAY	1 cut(s)	321
FspBI	CTAG	4 cut(s)	204, 218, 959, 1086
FspI	TGCGCA	1 cut(s)	321
GlaI	GCGC	2 cut(s)	161, 321
GluI	GCNGC	3 cut(s)	195, 283, 859
GsaI	CCCAGC	1 cut(s)	414
GsuI	CTGGAG	1 cut(s)	924
HapII	CCGG	3 cut(s)	427, 573, 655
HgaI	GACGC	1 cut(s)	482
HhaI	GCGC	2 cut(s)	162, 322
Hin1II	CATG	3 cut(s)	282, 338, 838
Hin6I	GCGC	2 cut(s)	160, 320
HinP1I	GCGC	2 cut(s)	160, 320
HindIII	AAGCTT	1 cut(s)	680
HinfI	GANTC	7 cut(s)	207, 431, 660, 1022, 1028, 1043, 1092
HpaII	CCGG	3 cut(s)	427, 573, 655
Hpy166II	GTNNAC	1 cut(s)	615
Hpy188I	TCNGA	6 cut(s)	109, 246, 521, 826, 985, 1027
Hpy188III	TCNNGA	5 cut(s)	37, 227, 326, 435, 631
Hpy8I	GTNNAC	1 cut(s)	615
HpyAV	CCTTC	2 cut(s)	131, 323
HpyCH4III	ACNGT	4 cut(s)	304, 424, 728, 1050
HpyCH4V	TGCA	9 cut(s)	117, 197, 446, 688, 776, 861, 920, 1064, 1075
HpyF10VI	GCNNNNNNNGC	4 cut(s)	78, 521, 773, 945
HpyF3I	CTNAG	3 cut(s)	108, 143, 518
Hsp92II	CATG	3 cut(s)	282, 338, 838
HspAI	GCGC	2 cut(s)	160, 320
Ksp22I	TGATCA	1 cut(s)	501
Kzo9I	GATC	3 cut(s)	149, 501, 508
LmnI	GCTCC	2 cut(s)	706, 905
Lsp1109I	GCAGC	2 cut(s)	181, 845
LweI	GCATC	9 cut(s)	90, 306, 307, 331, 545, 585, 998, 1051, 1062
MaeI	CTAG	4 cut(s)	204, 218, 959, 1086
MaeIII	GTNAC	1 cut(s)	898
MalI	GATC	3 cut(s)	151, 503, 510
MboI	GATC	3 cut(s)	149, 501, 508
MboII	GAAGA	4 cut(s)	428, 531, 803, 1101
MfeI	CAATTG	1 cut(s)	525
MhlI	GDGCHC	1 cut(s)	711
MlyI	GAGTC	3 cut(s)	1031, 1037, 1101
MmeI	TCCRAC	1 cut(s)	1005
MroXI	GAANNNNTTC	1 cut(s)	32
MseI	TTAA	3 cut(s)	129, 965, 975
MslI	CAYNNNNRTG	1 cut(s)	1109
MspCI	CTTAAG	1 cut(s)	964
MspI	CCGG	3 cut(s)	427, 573, 655
MspR9I	CCNGG	5 cut(s)	180, 191, 428, 656, 713
MunI	CAATTG	1 cut(s)	525
Mva1269I	GAATGC	1 cut(s)	912
MvaI	CCWGG	3 cut(s)	180, 191, 713
MvnI	CGCG	1 cut(s)	162
MwoI	GCNNNNNNNGC	4 cut(s)	78, 521, 773, 945
NciI	CCSGG	2 cut(s)	428, 656
NdeII	GATC	3 cut(s)	149, 501, 508
NlaIII	CATG	3 cut(s)	282, 338, 838
NsbI	TGCGCA	1 cut(s)	321
NspI	RCATGY	1 cut(s)	282
PctI	GAATGC	1 cut(s)	912
PdmI	GAANNNNTTC	1 cut(s)	32
PfeI	GAWTC	4 cut(s)	207, 431, 660, 1043
PflFI	GACNNNGTC	1 cut(s)	422
PfoI	TCCNGGA	1 cut(s)	426
PkrI	GCNGC	3 cut(s)	196, 284, 860
PleI	GAGTC	3 cut(s)	1030, 1036, 1100
PpsI	GAGTC	3 cut(s)	1030, 1036, 1100
Psp6I	CCWGG	3 cut(s)	178, 189, 711
PspFI	CCCAGC	1 cut(s)	410
PspGI	CCWGG	3 cut(s)	178, 189, 711
PspPI	GGNCC	2 cut(s)	424, 640
PsyI	GACNNNGTC	1 cut(s)	422
RseI	CAYNNNNRTG	1 cut(s)	1109
Rsr2I	CGGWCCG	1 cut(s)	424
RsrII	CGGWCCG	1 cut(s)	424
SaqAI	TTAA	3 cut(s)	129, 965, 975
SatI	GCNGC	3 cut(s)	195, 283, 859
Sau3AI	GATC	3 cut(s)	149, 501, 508
Sau96I	GGNCC	2 cut(s)	424, 640
SchI	GAGTC	3 cut(s)	1031, 1037, 1101
ScrFI	CCNGG	5 cut(s)	180, 191, 428, 656, 713
SduI	GDGCHC	1 cut(s)	711
SfaNI	GCATC	9 cut(s)	90, 306, 307, 331, 545, 585, 998, 1051, 1062
SinI	GGWCC	2 cut(s)	424, 640
SmiMI	CAYNNNNRTG	1 cut(s)	1109
SmlI	CTYRAG	3 cut(s)	629, 788, 964
SmoI	CTYRAG	3 cut(s)	629, 788, 964
SsiI	CCGC	1 cut(s)	283
SspI	AATATT	1 cut(s)	234
SspMI	CTAG	4 cut(s)	204, 218, 959, 1086
StyD4I	CCNGG	5 cut(s)	178, 189, 426, 654, 711
TaaI	ACNGT	4 cut(s)	304, 424, 728, 1050
TaqI	TCGA	2 cut(s)	255, 620
TaqII	GACCGA	1 cut(s)	189
TauI	GCSGC	1 cut(s)	285
TfiI	GAWTC	4 cut(s)	207, 431, 660, 1043
Tru1I	TTAA	3 cut(s)	129, 965, 975
Tru9I	TTAA	3 cut(s)	129, 965, 975
TscAI	CASTG	6 cut(s)	162, 670, 754, 941, 1053, 1111
TseI	GCWGC	2 cut(s)	194, 858
TspDTI	ATGAA	1 cut(s)	212
TspGWI	ACGGA	2 cut(s)	263, 521
TspRI	CASTG	6 cut(s)	162, 670, 754, 941, 1053, 1111
Tth111I	GACNNNGTC	1 cut(s)	422
Vha464I	CTTAAG	1 cut(s)	964
VpaK11BI	GGWCC	2 cut(s)	424, 640
XapI	RAATTY	1 cut(s)	1100
XceI	RCATGY	1 cut(s)	282
XmiI	GTMKAC	1 cut(s)	614
XmnI	GAANNNNTTC	1 cut(s)	32
XspI	CTAG	4 cut(s)	204, 218, 959, 1086

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.