Rh7BG073200

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0001041
Physical Location & Seq
Reverse (-)
4939342 .. 4940966
1625 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG073200.1

Sequence Viewer

Length: 1095 bp
ATGTGTTTGCACACCAAAAAGAAAACTGGGATATTTTCATCGTTGAGCGATGATTTACTTGGCCTAGTCATTAACAAGGTCAAGGACAAACAAGATAGAAAATCGTTTTCCCAGGTCTGCAAGCAATGGCTTAAAGTCGAAGGTCTAGACCGATCATCACTCTCCCTTTATGTTAAGAGCCCCGGATTTTCCCTTCCTGCACTAACTAGATTCCCAAATATAGTCAATTTGACATTGTGGCATTTCAAGACCCACACTGACCTCGAATTCATAGCCCACACATGTCCTAAACTCGAGAGAATCAGGATTGATTGCAGAGGTAAGGATGGTGGTGATTCGAGCCGAAAAGGTCTGTGCGCTTTGGGAGGTGGGTGTCCCAAATTGTCTGAAGTTATGATTTTCGGGAAGGGAATAGGGAATTCTGGAGTTGGTGGGCTTTTGCATTCAGCACATAACTTGGAGGCCCTGGTTTTGATAAACAGCTCTATATCGGATGAAGCCCTCAGAGTAATTGGCTCCACATCTTCCATTAGCATTTTAAAGTTAAGACGTTGTTATAACATTACTGATGAGGGATTGGCTTTTTTGGCGAATGGATCTACCTCGAAAACCCTTAAGAAATTGGTCCTTGAGAGGTGCCCTATTATCACTGATACTGGGGTCAAGCTTTTGGGCAAAATGTGTAGTTTGGAGCACCTGAAATTGTCTTATGAGGGAGGAGTCAGTCAAATCACTGATATTGGAGGTGTGGGAATTTCTGCAATTCGAACCCTCAGGGAATTGATATTGAATTATGTGAACGTGTCGGACCCTACCATGGCCGCTCTTGCACAGAATTGCCGCAACTTGGAAATGCTTGATTTAGGGGGTTATGAAAAGGTAACCGGAGCTGGCATTCGTGCATTTTGCAGTCACAAGTGCTTGAAATTCCTTGAATTGCGAGGGTTAACCAACTTCAGTCTTTCTGATGTGGAACAGATAGTGCCTGGATGCCCATCATTGGATTCTGTTGTGGTGGATTCACATAAGAGGTTTGATCCGACTTGGAAGATGCACGACAAAACTAGAGGAGTTATTAAGTGTCGAGTTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

364

Amino Acids

39.77

Weight (kDa)

9.18

Isoelectric Point (pI)

30.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box_5 PF18511 14 - 52 1.1e-08 F-box
DUF7885 PF25372 153 - 229 8.8e-07 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 558
AccB1I GGYRCC 1 cut(s) 636
AccBSI CCGCTC 1 cut(s) 824
AciI CCGC 2 cut(s) 822, 841
AclWI GGATC 2 cut(s) 604, 1031
AcoI YGGCCR 1 cut(s) 819
AcsI RAATTY 4 cut(s) 266, 418, 753, 926
AcuI CTGAAG 2 cut(s) 408, 940
AfiI CCNNNNNNNGG 3 cut(s) 817, 847, 1000
AflII CTTAAG 1 cut(s) 614
AflIII ACRYGT 2 cut(s) 281, 801
AgsI TTSAA 4 cut(s) 247, 790, 925, 935
AjnI CCWGG 3 cut(s) 111, 465, 985
AluBI AGCT 3 cut(s) 483, 667, 890
AluI AGCT 3 cut(s) 483, 667, 890
Alw21I GWGCWC 1 cut(s) 696
AlwI GGATC 2 cut(s) 604, 1031
Ama87I CYCGRG 1 cut(s) 293
AoxI GGCC 3 cut(s) 61, 462, 819
ApoI RAATTY 4 cut(s) 266, 418, 753, 926
AspLEI GCGC 1 cut(s) 359
AspS9I GGNCC 3 cut(s) 463, 625, 808
AsuC2I CCSGG 1 cut(s) 183
AsuHPI GGTGA 1 cut(s) 344
AsuII TTCGAA 1 cut(s) 766
AvaI CYCGRG 1 cut(s) 293
AvaII GGWCC 2 cut(s) 625, 808
AxyI CCTNAGG 1 cut(s) 773
BaeGI GKGCMC 1 cut(s) 641
BaeI ACNNNNGTAYC 2 cut(s) 645, 678
BanI GGYRCC 1 cut(s) 636
BanII GRGCYC 1 cut(s) 182
Bbv12I GWGCWC 1 cut(s) 696
BccI CCATC 2 cut(s) 320, 1003
BciT130I CCWGG 3 cut(s) 113, 467, 987
BcnI CCSGG 1 cut(s) 183
BfaI CTAG 4 cut(s) 65, 146, 207, 1065
BfrI CTTAAG 1 cut(s) 614
BisI GCNGC 2 cut(s) 822, 841
BlsI GCNGC 2 cut(s) 823, 842
Bme1390I CCNGG 4 cut(s) 113, 183, 467, 987
Bme18I GGWCC 2 cut(s) 625, 808
BmeT110I CYCGRG 1 cut(s) 293
BmgT120I GGNCC 3 cut(s) 463, 625, 808
BmiI GGNNCC 3 cut(s) 517, 638, 810
BmrFI CCNGG 4 cut(s) 113, 183, 467, 987
BmrI ACTGGG 2 cut(s) 36, 666
BmsI GCATC 2 cut(s) 980, 1041
BmuI ACTGGG 2 cut(s) 36, 666
BpmI CTGGAG 1 cut(s) 444
Bpu14I TTCGAA 1 cut(s) 766
BpuEI CTTGAG 1 cut(s) 650
BpuMI CCSGG 1 cut(s) 183
BsaBI GATNNNNATC 1 cut(s) 994
BsaJI CCNNGG 4 cut(s) 111, 181, 465, 816
BsaWI WCCGGW 1 cut(s) 884
Bsc4I CCNNNNNNNGG 3 cut(s) 817, 847, 1000
Bse1I ACTGG 2 cut(s) 31, 661
Bse21I CCTNAGG 1 cut(s) 773
Bse3DI GCAATG 1 cut(s) 131
Bse8I GATNNNNATC 1 cut(s) 994
BseBI CCWGG 3 cut(s) 113, 467, 987
BseDI CCNNGG 4 cut(s) 111, 181, 465, 816
BseGI GGATG 3 cut(s) 331, 499, 995
BseJI GATNNNNATC 1 cut(s) 994
BseLI CCNNNNNNNGG 3 cut(s) 817, 847, 1000
BseMI GCAATG 1 cut(s) 131
BseMII CTCAG 2 cut(s) 517, 787
BseNI ACTGG 2 cut(s) 31, 661
BseRI GAGGAG 2 cut(s) 732, 1083
BseSI GKGCMC 1 cut(s) 641
BsgI GTGCAG 1 cut(s) 183
BshFI GGCC 3 cut(s) 63, 464, 821
BshNI GGYRCC 1 cut(s) 636
BsiHKAI GWGCWC 1 cut(s) 696
BsiHKCI CYCGRG 1 cut(s) 293
BsiSI CCGG 2 cut(s) 183, 885
BslFI GGGAC 1 cut(s) 360
BslI CCNNNNNNNGG 3 cut(s) 817, 847, 1000
BsmFI GGGAC 1 cut(s) 360
BsmI GAATGC 2 cut(s) 442, 894
BsnI GGCC 3 cut(s) 63, 464, 821
BsoBI CYCGRG 1 cut(s) 293
Bsp119I TTCGAA 1 cut(s) 766
Bsp1286I GDGCHC 3 cut(s) 182, 641, 696
Bsp143I GATC 3 cut(s) 152, 596, 1036
Bsp19I CCATGG 1 cut(s) 816
BspACI CCGC 2 cut(s) 822, 841
BspANI GGCC 3 cut(s) 63, 464, 821
BspCNI CTCAG 2 cut(s) 516, 786
BspHI TCATGA 1 cut(s) 1091
BspLI GGNNCC 3 cut(s) 517, 638, 810
BspPI GGATC 2 cut(s) 604, 1031
BspT104I TTCGAA 1 cut(s) 766
BspT107I GGYRCC 1 cut(s) 636
BspTI CTTAAG 1 cut(s) 614
BsrBI CCGCTC 1 cut(s) 824
BsrDI GCAATG 1 cut(s) 131
BsrI ACTGG 2 cut(s) 31, 661
BssECI CCNNGG 4 cut(s) 111, 181, 465, 816
BssMI GATC 3 cut(s) 152, 596, 1036
BssT1I CCWWGG 1 cut(s) 816
Bst2UI CCWGG 3 cut(s) 113, 467, 987
BstAFI CTTAAG 1 cut(s) 614
BstBI TTCGAA 1 cut(s) 766
BstC8I GCNNGC 2 cut(s) 122, 892
BstDEI CTNAG 2 cut(s) 503, 773
BstDSI CCRYGG 1 cut(s) 816
BstEII GGTNACC 1 cut(s) 880
BstF5I GGATG 3 cut(s) 331, 499, 995
BstHHI GCGC 1 cut(s) 359
BstKTI GATC 3 cut(s) 155, 599, 1039
BstMBI GATC 3 cut(s) 152, 596, 1036
BstMWI GCNNNNNNNGC 2 cut(s) 587, 827
BstNI CCWGG 3 cut(s) 113, 467, 987
BstNSI RCATGY 1 cut(s) 285
BstPI GGTNACC 1 cut(s) 880
BstSCI CCNGG 4 cut(s) 111, 181, 465, 985
BstSLI GKGCMC 1 cut(s) 641
BstX2I RGATCY 1 cut(s) 596
BstYI RGATCY 1 cut(s) 596
Bsu36I CCTNAGG 1 cut(s) 773
BsuRI GGCC 3 cut(s) 63, 464, 821
BtgI CCRYGG 1 cut(s) 816
BtgZI GCGATG 1 cut(s) 63
BtsCI GGATG 3 cut(s) 331, 499, 995
BtsIMutI CAGTG 3 cut(s) 255, 648, 732
Cac8I GCNNGC 2 cut(s) 122, 892
CciI TCATGA 1 cut(s) 1091
CfoI GCGC 1 cut(s) 359
Cfr13I GGNCC 3 cut(s) 463, 625, 808
CviAII CATG 3 cut(s) 282, 817, 1092
DdeI CTNAG 2 cut(s) 503, 773
DpnI GATC 3 cut(s) 154, 598, 1038
DpnII GATC 3 cut(s) 152, 596, 1036
DraI TTTAAA 1 cut(s) 540
EaeI YGGCCR 1 cut(s) 819
Eco130I CCWWGG 1 cut(s) 816
Eco24I GRGCYC 1 cut(s) 182
Eco47I GGWCC 2 cut(s) 625, 808
Eco57I CTGAAG 2 cut(s) 408, 940
Eco81I CCTNAGG 1 cut(s) 773
Eco88I CYCGRG 1 cut(s) 293
Eco91I GGTNACC 1 cut(s) 880
EcoO109I RGGNCCY 1 cut(s) 463
EcoO65I GGTNACC 1 cut(s) 880
EcoRI GAATTC 2 cut(s) 266, 418
EcoRII CCWGG 3 cut(s) 111, 465, 985
EcoT14I CCWWGG 1 cut(s) 816
EcoT38I GRGCYC 1 cut(s) 182
ErhI CCWWGG 1 cut(s) 816
FaeI CATG 3 cut(s) 285, 820, 1095
FaqI GGGAC 1 cut(s) 360
FatI CATG 3 cut(s) 281, 816, 1091
Fnu4HI GCNGC 2 cut(s) 822, 841
FokI GGATG 3 cut(s) 338, 506, 1002
FriOI GRGCYC 1 cut(s) 182
Fsp4HI GCNGC 2 cut(s) 822, 841
FspBI CTAG 4 cut(s) 65, 146, 207, 1065
GlaI GCGC 1 cut(s) 358
GluI GCNGC 2 cut(s) 822, 841
GsuI CTGGAG 1 cut(s) 444
HaeIII GGCC 3 cut(s) 63, 464, 821
HapII CCGG 2 cut(s) 183, 885
HhaI GCGC 1 cut(s) 359
Hin1II CATG 3 cut(s) 285, 820, 1095
Hin6I GCGC 1 cut(s) 357
HinP1I GCGC 1 cut(s) 357
HincII GTYRAC 1 cut(s) 948
HindII GTYRAC 1 cut(s) 948
HindIII AAGCTT 1 cut(s) 665
HinfI GANTC 6 cut(s) 210, 300, 335, 720, 1004, 1019
HpaI GTTAAC 1 cut(s) 948
HpaII CCGG 2 cut(s) 183, 885
HphI GGTGA 1 cut(s) 344
Hpy166II GTNNAC 2 cut(s) 799, 948
Hpy188I TCNGA 6 cut(s) 388, 493, 506, 808, 967, 1041
Hpy188III TCNNGA 7 cut(s) 146, 247, 295, 304, 403, 423, 1092
Hpy8I GTNNAC 2 cut(s) 799, 948
HpyAV CCTTC 3 cut(s) 134, 203, 400
HpyCH4IV ACGT 2 cut(s) 550, 801
HpyF10VI GCNNNNNNNGC 2 cut(s) 587, 827
HpyF3I CTNAG 2 cut(s) 503, 773
HpySE526I ACGT 2 cut(s) 550, 801
Hsp92II CATG 3 cut(s) 285, 820, 1095
HspAI GCGC 1 cut(s) 357
KspAI GTTAAC 1 cut(s) 948
Kzo9I GATC 3 cut(s) 152, 596, 1036
LmnI GCTCC 3 cut(s) 521, 691, 887
LweI GCATC 2 cut(s) 980, 1041
MaeI CTAG 4 cut(s) 65, 146, 207, 1065
MaeII ACGT 2 cut(s) 550, 801
MaeIII GTNAC 2 cut(s) 880, 911
MalI GATC 3 cut(s) 154, 598, 1038
MbiI CCGCTC 1 cut(s) 824
MboI GATC 3 cut(s) 152, 596, 1036
MboII GAAGA 2 cut(s) 516, 1060
MflI RGATCY 1 cut(s) 596
MhlI GDGCHC 3 cut(s) 182, 641, 696
MlyI GAGTC 1 cut(s) 729
MmeI TCCRAC 2 cut(s) 786, 1064
MseI TTAA 8 cut(s) 72, 132, 174, 539, 545, 615, 947, 1077
MspCI CTTAAG 1 cut(s) 614
MspI CCGG 2 cut(s) 183, 885
MspR9I CCNGG 4 cut(s) 113, 183, 467, 987
Mva1269I GAATGC 2 cut(s) 442, 894
MvaI CCWGG 3 cut(s) 113, 467, 987
MwoI GCNNNNNNNGC 2 cut(s) 587, 827
NciI CCSGG 1 cut(s) 183
NcoI CCATGG 1 cut(s) 816
NdeII GATC 3 cut(s) 152, 596, 1036
NlaIII CATG 3 cut(s) 285, 820, 1095
NlaIV GGNNCC 3 cut(s) 517, 638, 810
NmuCI GTSAC 1 cut(s) 911
NspI RCATGY 1 cut(s) 285
NspV TTCGAA 1 cut(s) 766
PaeR7I CTCGAG 1 cut(s) 293
PagI TCATGA 1 cut(s) 1091
PciI ACATGT 1 cut(s) 281
PctI GAATGC 2 cut(s) 442, 894
PfeI GAWTC 5 cut(s) 210, 300, 335, 1004, 1019
PkrI GCNGC 2 cut(s) 823, 842
PleI GAGTC 1 cut(s) 728
PpsI GAGTC 1 cut(s) 728
PscI ACATGT 1 cut(s) 281
PsiI TTATAA 1 cut(s) 558
Psp6I CCWGG 3 cut(s) 111, 465, 985
PspEI GGTNACC 1 cut(s) 880
PspGI CCWGG 3 cut(s) 111, 465, 985
PspN4I GGNNCC 3 cut(s) 517, 638, 810
PspPI GGNCC 3 cut(s) 463, 625, 808
PsuI RGATCY 1 cut(s) 596
SaqAI TTAA 8 cut(s) 72, 132, 174, 539, 545, 615, 947, 1077
SatI GCNGC 2 cut(s) 822, 841
Sau3AI GATC 3 cut(s) 152, 596, 1036
Sau96I GGNCC 3 cut(s) 463, 625, 808
SchI GAGTC 1 cut(s) 729
ScrFI CCNGG 4 cut(s) 113, 183, 467, 987
SduI GDGCHC 3 cut(s) 182, 641, 696
SfaNI GCATC 2 cut(s) 980, 1041
Sfr274I CTCGAG 1 cut(s) 293
SfuI TTCGAA 1 cut(s) 766
SinI GGWCC 2 cut(s) 625, 808
SlaI CTCGAG 1 cut(s) 293
SmlI CTYRAG 3 cut(s) 293, 614, 629
SmoI CTYRAG 3 cut(s) 293, 614, 629
SsiI CCGC 2 cut(s) 822, 841
SspMI CTAG 4 cut(s) 65, 146, 207, 1065
StyD4I CCNGG 4 cut(s) 111, 181, 465, 985
StyI CCWWGG 1 cut(s) 816
TaiI ACGT 2 cut(s) 553, 804
TaqI TCGA 7 cut(s) 138, 264, 294, 338, 605, 766, 1084
TaqII GACCGA 1 cut(s) 165
TauI GCSGC 2 cut(s) 824, 843
TfiI GAWTC 5 cut(s) 210, 300, 335, 1004, 1019
Tru1I TTAA 8 cut(s) 72, 132, 174, 539, 545, 615, 947, 1077
Tru9I TTAA 8 cut(s) 72, 132, 174, 539, 545, 615, 947, 1077
TscAI CASTG 3 cut(s) 262, 655, 739
TseFI GTSAC 1 cut(s) 911
Tsp45I GTSAC 1 cut(s) 911
TspDTI ATGAA 5 cut(s) 27, 259, 510, 888, 1080
TspRI CASTG 3 cut(s) 262, 655, 739
Vha464I CTTAAG 1 cut(s) 614
VpaK11BI GGWCC 2 cut(s) 625, 808
XapI RAATTY 4 cut(s) 266, 418, 753, 926
XbaI TCTAGA 1 cut(s) 145
XceI RCATGY 1 cut(s) 285
XhoI CTCGAG 1 cut(s) 293
XspI CTAG 4 cut(s) 65, 146, 207, 1065
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.