Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001041

Physical Location & Seq

Genomic Coordinates Forward (+)

34294981 .. 34296535

Gene Structure 1555 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00110040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGGTGCACACACCAAAAAGAAATCTGGGATATTTTCATCGTTGAGAGGCGATTTACTTGGCCTAGTCATTAACAAGGTCAAGGACAAAGAAGATAGAAACTTTTTTTCCGAGGTCTGCAAGCAATGGTTTAAAGTGGAAGGTCTAGACCGGTCATCACTTTCCCTTGATGTTAATAAGCCCGGATTTTCCCTTCCTGCACTAACTAGATTCCCCAATATAGTCAATTTGACATTGTGGGATTTCAAGACACATAATGACCTCGAATTCATAGCCAAAACATGTCCTAAAATCGAGAGCATCATGATTGAATGCAGAGATGAGAAGCCAAAAGGTGATGGTGGTATTTTAAGCAGAAAAGGTCTGTGTGCTTTGGGAGATGGGTGTCCCAAATTGTCCGAAATTGAAATTATTGGGCCAAATACAATAGGGGATTCTGGAGTTGATGAGCCTTTACATTCAGCACATAACTTGGAGGCCCTGGTTTTGCTAAAGAATAGCTTGATATCGGTGAATGGATCTACCTCAAAAACCCTTAAGAAATTGATCCTTTATACTTTCCCTAAAATCACTAATACTGGGGTCGAGCTTTTGGGCAAAATGTGTAGCTTGGAGCACTTGGAATTGTCCTCTGGGGGAGAAATGAGTCAAATCACTGATATTGGAGGTGTGGCAATCTTTGCAATTCGAACCCTCAAGGAAGTGAGATTGAATCATCTAAACATGTCAGACCCTACCATGGTCGCTCTTGCACAAAATTGCCGCAACTTGGAAATACTTGATTTAGGGGGTTGTGAAAGGGTAACTGGAGCTGGCATTTGTGCATTTTGTGGTCATAAGTGCTTGAAATGCCTTGAATTGCACGAGTTAAATATCAATCTTTCTGATGTGGAATGGATAGTGCTTGGATGCCCTTCATTGGATTCTGTTGTCGTGGATTCTCGTAGGAGGCTTGATCTAACTTGGAGTGATCAATTGTTGCATGACAAAACTAGAAGAGTTCTTAATTTTCATGGTTCAAGTTTTCATGTCTCATTTGTCTTCTCAGATAGCAATGATGCGCAGTCTGCTGTTGCAATGCACTGCTCGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_6

Protein Analysis

364

Amino Acids

39.97

Weight (kDa)

6.46

Isoelectric Point (pI)

40.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box_5	PF18511	18 - 52	3.5e-07	F-box
DUF7885	PF25372	175 - 362	6.6e-07	Leucine Rich Repeat Domain of unknown function (DUF7885)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001041)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40700 FvH4_5g10370 FvH4_5g12160 FvH4_5g12180 FvH4_5g12190 FvH4_5g12200 FvH4_5g12210 FvH4_5g12211
rosa_chinensis	RchiOBHm_Chr5g0073461 RchiOBHm_Chr5g0073471 RchiOBHm_Chr7g0185341 RchiOBHm_Chr7g0185381 RchiOBHm_Chr7g0185401
rosa_laevigata	RLG00000004916 RLG00000004917 RLG00000004921 RLG00000019401 RLG00000036387
rosa_multiflora	Rmu_co8366929.1_g000001 Rmu_co8392105.1_g000001 Rmu_sc0001761.1_g000011 Rmu_sc0001761.1_g000012 Rmu_sc0001761.1_g000013 Rmu_sc0001761.1_g000016 Rmu_sc0004670.1_g000010 Rmu_sc0008496.1_g000005 Rmu_sc0023242.1_g000005 Rmu_sc0023242.1_g000006 Rmu_ssc0000226.1_g000026 Rmu_ssc0000226.1_g000027
rosa_roxburghii	Rroxscaffold_1G00007790 Rroxscaffold_1G00017220 Rroxscaffold_2G00110040 Rroxscaffold_3G00269000 Rroxscaffold_3G00269010
rosa_rugosa	Rorug05G0423700 Rorug06G0468100 Rorug06G0468700
rosa_samantha	Rh2CG354600 Rh2CG354700 Rh2DG393800 Rh5AG481000 Rh5CG455400 Rh5CG524900 Rh5DG514100 Rh7AG074000 Rh7AG074100 Rh7AG074200 Rh7AG074600 Rh7BG072600 Rh7BG073200 Rh7BG073300 Rh7BG073400 Rh7DG073200 Rh7DG073600 Rh7DG073700 Rh7DG073800
rosa_wichuraiana	Rw2G030200 Rw7G006080 Rw7G006120 Rw7G006130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1062
AciI	CCGC	1 cut(s)	763
AclWI	GGATC	2 cut(s)	526, 541
AcsI	RAATTY	1 cut(s)	266
AfiI	CCNNNNNNNGG	3 cut(s)	739, 769, 919
AflII	CTTAAG	1 cut(s)	536
AflIII	ACRYGT	2 cut(s)	281, 723
AgeI	ACCGGT	1 cut(s)	150
AgsI	TTSAA	7 cut(s)	247, 311, 407, 712, 847, 857, 1020
AjnI	CCWGG	1 cut(s)	480
AluBI	AGCT	4 cut(s)	501, 589, 609, 812
AluI	AGCT	4 cut(s)	501, 589, 609, 812
Alw21I	GWGCWC	2 cut(s)	10, 618
Alw26I	GTCTC	1 cut(s)	1036
Alw44I	GTGCAC	1 cut(s)	6
AlwI	GGATC	2 cut(s)	526, 541
AoxI	GGCC	3 cut(s)	61, 416, 477
ApaLI	GTGCAC	1 cut(s)	6
ApoI	RAATTY	1 cut(s)	266
AsiGI	ACCGGT	1 cut(s)	150
AspLEI	GCGC	1 cut(s)	1063
AspS9I	GGNCC	2 cut(s)	416, 478
AsuC2I	CCSGG	1 cut(s)	183
AsuHPI	GGTGA	2 cut(s)	347, 523
AsuII	TTCGAA	1 cut(s)	688
BaeGI	GKGCMC	1 cut(s)	10
BauI	CACGAG	1 cut(s)	863
BbsI	GAAGAC	1 cut(s)	1033
Bbv12I	GWGCWC	2 cut(s)	10, 618
BccI	CCATC	2 cut(s)	332, 374
BciT130I	CCWGG	1 cut(s)	482
BclI	TGATCA	1 cut(s)	970
BcnI	CCSGG	1 cut(s)	183
BcoDI	GTCTC	1 cut(s)	1036
BfaI	CTAG	4 cut(s)	65, 146, 207, 993
BfrI	CTTAAG	1 cut(s)	536
BisI	GCNGC	1 cut(s)	763
BlsI	GCNGC	1 cut(s)	764
Bme1390I	CCNGG	2 cut(s)	183, 482
BmgT120I	GGNCC	2 cut(s)	416, 478
BmrFI	CCNGG	2 cut(s)	183, 482
BmrI	ACTGGG	1 cut(s)	588
BmsI	GCATC	3 cut(s)	309, 899, 1048
BmuI	ACTGGG	1 cut(s)	588
BpiI	GAAGAC	1 cut(s)	1033
BpmI	CTGGAG	2 cut(s)	459, 828
Bpu14I	TTCGAA	1 cut(s)	688
BpuEI	CTTGAG	1 cut(s)	680
BpuMI	CCSGG	1 cut(s)	183
BsaJI	CCNNGG	3 cut(s)	111, 480, 738
BsaWI	WCCGGW	1 cut(s)	150
Bsc4I	CCNNNNNNNGG	3 cut(s)	739, 769, 919
Bse118I	RCCGGY	1 cut(s)	150
Bse1I	ACTGG	2 cut(s)	583, 811
Bse3DI	GCAATG	3 cut(s)	131, 1060, 1083
BseBI	CCWGG	1 cut(s)	482
BseDI	CCNNGG	3 cut(s)	111, 480, 738
BseGI	GGATG	1 cut(s)	914
BseLI	CCNNNNNNNGG	3 cut(s)	739, 769, 919
BseMI	GCAATG	3 cut(s)	131, 1060, 1083
BseMII	CTCAG	1 cut(s)	1059
BseNI	ACTGG	2 cut(s)	583, 811
BseSI	GKGCMC	1 cut(s)	10
BsgI	GTGCAG	1 cut(s)	183
BshFI	GGCC	3 cut(s)	63, 418, 479
BshTI	ACCGGT	1 cut(s)	150
BsiHKAI	GWGCWC	2 cut(s)	10, 618
BsiSI	CCGG	2 cut(s)	151, 183
BslFI	GGGAC	1 cut(s)	372
BslI	CCNNNNNNNGG	3 cut(s)	739, 769, 919
BsmAI	GTCTC	1 cut(s)	1036
BsmFI	GGGAC	1 cut(s)	372
BsmI	GAATGC	1 cut(s)	317
BsnI	GGCC	3 cut(s)	63, 418, 479
Bsp119I	TTCGAA	1 cut(s)	688
Bsp1286I	GDGCHC	2 cut(s)	10, 618
Bsp143I	GATC	4 cut(s)	518, 546, 955, 970
Bsp19I	CCATGG	1 cut(s)	738
BspACI	CCGC	1 cut(s)	763
BspANI	GGCC	3 cut(s)	63, 418, 479
BspCNI	CTCAG	1 cut(s)	1058
BspHI	TCATGA	1 cut(s)	303
BspPI	GGATC	2 cut(s)	526, 541
BspT104I	TTCGAA	1 cut(s)	688
BspTI	CTTAAG	1 cut(s)	536
BsrDI	GCAATG	3 cut(s)	131, 1060, 1083
BsrFI	RCCGGY	1 cut(s)	150
BsrI	ACTGG	2 cut(s)	583, 811
BssAI	RCCGGY	1 cut(s)	150
BssECI	CCNNGG	3 cut(s)	111, 480, 738
BssMI	GATC	4 cut(s)	518, 546, 955, 970
BssSI	CACGAG	1 cut(s)	863
BssT1I	CCWWGG	1 cut(s)	738
Bst2BI	CACGAG	1 cut(s)	863
Bst2UI	CCWGG	1 cut(s)	482
Bst6I	CTCTTC	1 cut(s)	991
BstAFI	CTTAAG	1 cut(s)	536
BstAPI	GCANNNNNTGC	1 cut(s)	680
BstBI	TTCGAA	1 cut(s)	688
BstC8I	GCNNGC	2 cut(s)	122, 814
BstDEI	CTNAG	1 cut(s)	1045
BstDSI	CCRYGG	1 cut(s)	738
BstF5I	GGATG	1 cut(s)	914
BstHHI	GCGC	1 cut(s)	1063
BstKTI	GATC	4 cut(s)	521, 549, 958, 973
BstMAI	GTCTC	1 cut(s)	1036
BstMBI	GATC	4 cut(s)	518, 546, 955, 970
BstMWI	GCNNNNNNNGC	3 cut(s)	680, 849, 1067
BstNI	CCWGG	1 cut(s)	482
BstNSI	RCATGY	2 cut(s)	285, 727
BstSCI	CCNGG	2 cut(s)	181, 480
BstSLI	GKGCMC	1 cut(s)	10
BstV2I	GAAGAC	1 cut(s)	1033
BstX2I	RGATCY	1 cut(s)	518
BstYI	RGATCY	1 cut(s)	518
BsuRI	GGCC	3 cut(s)	63, 418, 479
BtgI	CCRYGG	1 cut(s)	738
BtsCI	GGATG	1 cut(s)	914
BtsI	GCAGTG	1 cut(s)	1081
BtsIMutI	CAGTG	2 cut(s)	654, 1081
Cac8I	GCNNGC	2 cut(s)	122, 814
CciI	TCATGA	1 cut(s)	303
CfoI	GCGC	1 cut(s)	1063
Cfr10I	RCCGGY	1 cut(s)	150
Cfr13I	GGNCC	2 cut(s)	416, 478
CspAI	ACCGGT	1 cut(s)	150
CviAII	CATG	7 cut(s)	282, 304, 724, 739, 983, 1013, 1028
DdeI	CTNAG	1 cut(s)	1045
DpnI	GATC	4 cut(s)	520, 548, 957, 972
DpnII	GATC	4 cut(s)	518, 546, 955, 970
DraI	TTTAAA	1 cut(s)	133
Eam1104I	CTCTTC	1 cut(s)	991
EarI	CTCTTC	1 cut(s)	991
Eco130I	CCWWGG	1 cut(s)	738
Eco32I	GATATC	1 cut(s)	507
EcoO109I	RGGNCCY	1 cut(s)	478
EcoRI	GAATTC	1 cut(s)	266
EcoRII	CCWGG	1 cut(s)	480
EcoRV	GATATC	1 cut(s)	507
EcoT14I	CCWWGG	1 cut(s)	738
ErhI	CCWWGG	1 cut(s)	738
FaeI	CATG	7 cut(s)	285, 307, 727, 742, 986, 1016, 1031
FalI	AAGNNNNNCTT	2 cut(s)	485, 517
FaqI	GGGAC	1 cut(s)	372
FatI	CATG	7 cut(s)	281, 303, 723, 738, 982, 1012, 1027
FbaI	TGATCA	1 cut(s)	970
Fnu4HI	GCNGC	1 cut(s)	763
FokI	GGATG	1 cut(s)	921
Fsp4HI	GCNGC	1 cut(s)	763
FspBI	CTAG	4 cut(s)	65, 146, 207, 993
FspI	TGCGCA	1 cut(s)	1062
GlaI	GCGC	1 cut(s)	1062
GluI	GCNGC	1 cut(s)	763
GsuI	CTGGAG	2 cut(s)	459, 828
HaeIII	GGCC	3 cut(s)	63, 418, 479
HapII	CCGG	2 cut(s)	151, 183
HhaI	GCGC	1 cut(s)	1063
Hin1II	CATG	7 cut(s)	285, 307, 727, 742, 986, 1016, 1031
Hin6I	GCGC	1 cut(s)	1061
HinP1I	GCGC	1 cut(s)	1061
HinfI	GANTC	6 cut(s)	210, 434, 646, 712, 923, 938
HpaII	CCGG	2 cut(s)	151, 183
HphI	GGTGA	2 cut(s)	347, 523
Hpy166II	GTNNAC	1 cut(s)	8
Hpy188I	TCNGA	5 cut(s)	112, 400, 730, 886, 1048
Hpy188III	TCNNGA	5 cut(s)	146, 247, 295, 304, 438
Hpy8I	GTNNAC	1 cut(s)	8
HpyAV	CCTTC	3 cut(s)	134, 203, 924
HpyF10VI	GCNNNNNNNGC	3 cut(s)	680, 849, 1067
HpyF3I	CTNAG	1 cut(s)	1045
Hsp92II	CATG	7 cut(s)	285, 307, 727, 742, 986, 1016, 1031
HspAI	GCGC	1 cut(s)	1061
Ksp22I	TGATCA	1 cut(s)	970
Kzo9I	GATC	4 cut(s)	518, 546, 955, 970
LmnI	GCTCC	2 cut(s)	613, 809
LweI	GCATC	3 cut(s)	309, 899, 1048
MaeI	CTAG	4 cut(s)	65, 146, 207, 993
MaeIII	GTNAC	1 cut(s)	802
MalI	GATC	4 cut(s)	520, 548, 957, 972
MboI	GATC	4 cut(s)	518, 546, 955, 970
MboII	GAAGA	3 cut(s)	104, 1008, 1033
MfeI	CAATTG	1 cut(s)	974
MflI	RGATCY	1 cut(s)	518
MhlI	GDGCHC	2 cut(s)	10, 618
MlyI	GAGTC	1 cut(s)	655
MnlI	CCTC	9 cut(s)	41, 106, 272, 469, 535, 640, 659, 704, 942
MseI	TTAA	7 cut(s)	72, 132, 174, 350, 537, 869, 1005
MspCI	CTTAAG	1 cut(s)	536
MspI	CCGG	2 cut(s)	151, 183
MspR9I	CCNGG	2 cut(s)	183, 482
MunI	CAATTG	1 cut(s)	974
Mva1269I	GAATGC	1 cut(s)	317
MvaI	CCWGG	1 cut(s)	482
MwoI	GCNNNNNNNGC	3 cut(s)	680, 849, 1067
NciI	CCSGG	1 cut(s)	183
NcoI	CCATGG	1 cut(s)	738
NdeII	GATC	4 cut(s)	518, 546, 955, 970
NlaIII	CATG	7 cut(s)	285, 307, 727, 742, 986, 1016, 1031
NsbI	TGCGCA	1 cut(s)	1062
NspI	RCATGY	2 cut(s)	285, 727
NspV	TTCGAA	1 cut(s)	688
PagI	TCATGA	1 cut(s)	303
PciI	ACATGT	2 cut(s)	281, 723
PctI	GAATGC	1 cut(s)	317
PfeI	GAWTC	5 cut(s)	210, 434, 712, 923, 938
PinAI	ACCGGT	1 cut(s)	150
PkrI	GCNGC	1 cut(s)	764
PleI	GAGTC	1 cut(s)	654
PpsI	GAGTC	1 cut(s)	654
PscI	ACATGT	2 cut(s)	281, 723
Psp6I	CCWGG	1 cut(s)	480
PspGI	CCWGG	1 cut(s)	480
PspPI	GGNCC	2 cut(s)	416, 478
PsuI	RGATCY	1 cut(s)	518
SaqAI	TTAA	7 cut(s)	72, 132, 174, 350, 537, 869, 1005
SatI	GCNGC	1 cut(s)	763
Sau3AI	GATC	4 cut(s)	518, 546, 955, 970
Sau96I	GGNCC	2 cut(s)	416, 478
SchI	GAGTC	1 cut(s)	655
ScrFI	CCNGG	2 cut(s)	183, 482
SduI	GDGCHC	2 cut(s)	10, 618
SfaNI	GCATC	3 cut(s)	309, 899, 1048
SfuI	TTCGAA	1 cut(s)	688
SmlI	CTYRAG	2 cut(s)	536, 695
SmoI	CTYRAG	2 cut(s)	536, 695
SsiI	CCGC	1 cut(s)	763
SspMI	CTAG	4 cut(s)	65, 146, 207, 993
StyD4I	CCNGG	2 cut(s)	181, 480
StyI	CCWWGG	1 cut(s)	738
TaqI	TCGA	4 cut(s)	264, 294, 585, 688
TauI	GCSGC	1 cut(s)	765
TfiI	GAWTC	5 cut(s)	210, 434, 712, 923, 938
Tru1I	TTAA	7 cut(s)	72, 132, 174, 350, 537, 869, 1005
Tru9I	TTAA	7 cut(s)	72, 132, 174, 350, 537, 869, 1005
TscAI	CASTG	2 cut(s)	661, 1088
TspDTI	ATGAA	5 cut(s)	27, 259, 906, 1001, 1016
TspRI	CASTG	2 cut(s)	661, 1088
Vha464I	CTTAAG	1 cut(s)	536
VneI	GTGCAC	1 cut(s)	6
XapI	RAATTY	1 cut(s)	266
XbaI	TCTAGA	1 cut(s)	145
XceI	RCATGY	2 cut(s)	285, 727
XspI	CTAG	4 cut(s)	65, 146, 207, 993

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.