Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001041

Physical Location & Seq

Genomic Coordinates Reverse (-)

49339377 .. 49340488

Gene Structure 1112 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G030200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGGTGTACACACCAAAAAGAAATCTGGGATATTTTCATCGTTGAGCAACGATTTACTTGGCCTAGTCATTAACAAGGTTAAGGACAAAGAAGATAGAAACTCGTTACCTCGGAACTGCAAGAAATGGTTTAAATTGGAAGGTCTAGACCGGTCATCACTTTCCCTTGATGTTAACAAGCCCGGATTTTCCCTTCCTGCACTAAATAGATTCCCCAATATAGTCAATTTGACATTATGGGATTTCAAGACCCACACCGACCTCAAATTCATAGCCAAAGCATGTCCTAAAATCGAGAGCATCATGATTGAATGCAGAGATGAGAAGCCAAAAGGTGATGGTTGTATTTTAAGCCAAAAAGGTCTTTGTGCTTTGGGAGATGGGTGTCCCAAATTGTCCGAAGTTGAGATTATTGGGCCAAACGCAACAGCGGATTCTAGAGTTGATGAGCTTTTACATTCAGCACATAACTTGGAGCCCCTGGTTTTGCTAAAGAATAGCTTGATATCGGGTGAAGCCCTCAGAGCAATTGGGTTCACATCTTCCATTAGCATTTTAGAGTTAATACATTGTTATAACATTACCGATGAGGGATTGGCTTTTTCAGTGAATGGATCTACCTCAAAAACCCTTAAGAAATTCGTCCTTTATACTTGTTGTAAAATCACTAATACTGGGGTCGAGCTTTTGGGCAAAATTCAAATCACTGATATTGGAGGTGTGGCAATCTCTGCAATTCGAACCCTCAAGGAATTGAGATTGAATCATCTAAACGTGTCAGACCCTACCATAGTCGCTCTTGCACAGAATTGCCGCAACGTGGAAATACTTGATATAGGGGGTTCTGAAAGGATAACTGGAGCTGGCATTTGTGCATTTTTCAATCATAAGTGCTTGAAATGCCTTGAATTGCACGAGTTAAATATCAATCTTTTTTATGTGGAACGGATAGTGCTTGGATGCCCTTCATTGGATTCTATTGTCGTGGATTCACGTAGGAGGCTTGATCTAACTTGGAGCGATCAATTGATGCATGACAAAACTAAAAGAGTTGTAAGTATGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_6

Protein Analysis

355

Amino Acids

39.17

Weight (kDa)

8.46

Isoelectric Point (pI)

36.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001041)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40700 FvH4_5g10370 FvH4_5g12160 FvH4_5g12180 FvH4_5g12190 FvH4_5g12200 FvH4_5g12210 FvH4_5g12211
rosa_chinensis	RchiOBHm_Chr5g0073461 RchiOBHm_Chr5g0073471 RchiOBHm_Chr7g0185341 RchiOBHm_Chr7g0185381 RchiOBHm_Chr7g0185401
rosa_laevigata	RLG00000004916 RLG00000004917 RLG00000004921 RLG00000019401 RLG00000036387
rosa_multiflora	Rmu_co8366929.1_g000001 Rmu_co8392105.1_g000001 Rmu_sc0001761.1_g000011 Rmu_sc0001761.1_g000012 Rmu_sc0001761.1_g000013 Rmu_sc0001761.1_g000016 Rmu_sc0004670.1_g000010 Rmu_sc0008496.1_g000005 Rmu_sc0023242.1_g000005 Rmu_sc0023242.1_g000006 Rmu_ssc0000226.1_g000026 Rmu_ssc0000226.1_g000027
rosa_roxburghii	Rroxscaffold_1G00007790 Rroxscaffold_1G00017220 Rroxscaffold_2G00110040 Rroxscaffold_3G00269000 Rroxscaffold_3G00269010
rosa_rugosa	Rorug05G0423700 Rorug06G0468100 Rorug06G0468700
rosa_samantha	Rh2CG354600 Rh2CG354700 Rh2DG393800 Rh5AG481000 Rh5CG455400 Rh5CG524900 Rh5DG514100 Rh7AG074000 Rh7AG074100 Rh7AG074200 Rh7AG074600 Rh7BG072600 Rh7BG073200 Rh7BG073300 Rh7BG073400 Rh7DG073200 Rh7DG073600 Rh7DG073700 Rh7DG073800
rosa_wichuraiana	Rw2G030200 Rw7G006080 Rw7G006120 Rw7G006130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	576
AciI	CCGC	2 cut(s)	431, 814
AclWI	GGATC	1 cut(s)	622
AcsI	RAATTY	3 cut(s)	266, 638, 696
AfaI	GTAC	1 cut(s)	9
AfiI	CCNNNNNNNGG	2 cut(s)	820, 970
AflII	CTTAAG	1 cut(s)	632
AflIII	ACRYGT	1 cut(s)	774
AgeI	ACCGGT	1 cut(s)	150
AgsI	TTSAA	7 cut(s)	247, 311, 701, 763, 883, 898, 908
AjnI	CCWGG	1 cut(s)	480
AluBI	AGCT	4 cut(s)	451, 501, 685, 863
AluI	AGCT	4 cut(s)	451, 501, 685, 863
AlwI	GGATC	1 cut(s)	622
AoxI	GGCC	2 cut(s)	61, 416
ApoI	RAATTY	3 cut(s)	266, 638, 696
AsiGI	ACCGGT	1 cut(s)	150
AspS9I	GGNCC	1 cut(s)	416
AsuC2I	CCSGG	1 cut(s)	183
AsuHPI	GGTGA	2 cut(s)	347, 524
AsuII	TTCGAA	1 cut(s)	739
BanII	GRGCYC	1 cut(s)	480
BauI	CACGAG	1 cut(s)	914
BccI	CCATC	2 cut(s)	332, 374
BciT130I	CCWGG	1 cut(s)	482
BcnI	CCSGG	1 cut(s)	183
BfaI	CTAG	3 cut(s)	65, 146, 438
BfrI	CTTAAG	1 cut(s)	632
BisI	GCNGC	1 cut(s)	814
BlsI	GCNGC	1 cut(s)	815
Bme1390I	CCNGG	2 cut(s)	183, 482
BmgT120I	GGNCC	1 cut(s)	416
BmiI	GGNNCC	1 cut(s)	477
BmrFI	CCNGG	2 cut(s)	183, 482
BmrI	ACTGGG	1 cut(s)	684
BmsI	GCATC	3 cut(s)	309, 950, 1020
BmuI	ACTGGG	1 cut(s)	684
BpmI	CTGGAG	1 cut(s)	879
Bpu14I	TTCGAA	1 cut(s)	739
BpuEI	CTTGAG	1 cut(s)	731
BpuMI	CCSGG	1 cut(s)	183
BsaAI	YACGTR	1 cut(s)	995
BsaJI	CCNNGG	2 cut(s)	110, 480
BsaWI	WCCGGW	1 cut(s)	150
Bsc4I	CCNNNNNNNGG	2 cut(s)	820, 970
Bse118I	RCCGGY	1 cut(s)	150
Bse1I	ACTGG	2 cut(s)	679, 862
BseBI	CCWGG	1 cut(s)	482
BseDI	CCNNGG	2 cut(s)	110, 480
BseGI	GGATG	1 cut(s)	965
BseLI	CCNNNNNNNGG	2 cut(s)	820, 970
BseMII	CTCAG	1 cut(s)	535
BseNI	ACTGG	2 cut(s)	679, 862
BsgI	GTGCAG	1 cut(s)	183
BshFI	GGCC	2 cut(s)	63, 418
BshTI	ACCGGT	1 cut(s)	150
BsiSI	CCGG	2 cut(s)	151, 183
BslFI	GGGAC	1 cut(s)	372
BslI	CCNNNNNNNGG	2 cut(s)	820, 970
BsmFI	GGGAC	1 cut(s)	372
BsmI	GAATGC	1 cut(s)	317
BsnI	GGCC	2 cut(s)	63, 418
Bsp119I	TTCGAA	1 cut(s)	739
Bsp1286I	GDGCHC	1 cut(s)	480
Bsp1407I	TGTACA	1 cut(s)	7
Bsp143I	GATC	3 cut(s)	614, 1006, 1021
BspACI	CCGC	2 cut(s)	431, 814
BspANI	GGCC	2 cut(s)	63, 418
BspCNI	CTCAG	1 cut(s)	534
BspHI	TCATGA	1 cut(s)	303
BspLI	GGNNCC	1 cut(s)	477
BspPI	GGATC	1 cut(s)	622
BspT104I	TTCGAA	1 cut(s)	739
BspTI	CTTAAG	1 cut(s)	632
BsrFI	RCCGGY	1 cut(s)	150
BsrGI	TGTACA	1 cut(s)	7
BsrI	ACTGG	2 cut(s)	679, 862
BssAI	RCCGGY	1 cut(s)	150
BssECI	CCNNGG	2 cut(s)	110, 480
BssMI	GATC	3 cut(s)	614, 1006, 1021
BssSI	CACGAG	1 cut(s)	914
Bst2BI	CACGAG	1 cut(s)	914
Bst2UI	CCWGG	1 cut(s)	482
BstAFI	CTTAAG	1 cut(s)	632
BstAPI	GCANNNNNTGC	1 cut(s)	731
BstAUI	TGTACA	1 cut(s)	7
BstBAI	YACGTR	1 cut(s)	995
BstBI	TTCGAA	1 cut(s)	739
BstC8I	GCNNGC	1 cut(s)	865
BstDEI	CTNAG	1 cut(s)	521
BstF5I	GGATG	1 cut(s)	965
BstKTI	GATC	3 cut(s)	617, 1009, 1024
BstMBI	GATC	3 cut(s)	614, 1006, 1021
BstMWI	GCNNNNNNNGC	3 cut(s)	524, 731, 900
BstNI	CCWGG	1 cut(s)	482
BstNSI	RCATGY	1 cut(s)	285
BstSCI	CCNGG	2 cut(s)	181, 480
BstX2I	RGATCY	1 cut(s)	614
BstYI	RGATCY	1 cut(s)	614
BsuRI	GGCC	2 cut(s)	63, 418
BtsCI	GGATG	1 cut(s)	965
BtsIMutI	CAGTG	2 cut(s)	612, 705
Cac8I	GCNNGC	1 cut(s)	865
CciI	TCATGA	1 cut(s)	303
Cfr10I	RCCGGY	1 cut(s)	150
Cfr13I	GGNCC	1 cut(s)	416
Csp6I	GTAC	1 cut(s)	8
CspAI	ACCGGT	1 cut(s)	150
CviAII	CATG	3 cut(s)	282, 304, 1034
CviQI	GTAC	1 cut(s)	8
DdeI	CTNAG	1 cut(s)	521
DpnI	GATC	3 cut(s)	616, 1008, 1023
DpnII	GATC	3 cut(s)	614, 1006, 1021
DraI	TTTAAA	1 cut(s)	133
Eco24I	GRGCYC	1 cut(s)	480
Eco32I	GATATC	1 cut(s)	507
EcoRII	CCWGG	1 cut(s)	480
EcoRV	GATATC	1 cut(s)	507
EcoT22I	ATGCAT	1 cut(s)	1035
EcoT38I	GRGCYC	1 cut(s)	480
FaeI	CATG	3 cut(s)	285, 307, 1037
FalI	AAGNNNNNCTT	2 cut(s)	485, 517
FaqI	GGGAC	1 cut(s)	372
FatI	CATG	3 cut(s)	281, 303, 1033
Fnu4HI	GCNGC	1 cut(s)	814
FokI	GGATG	1 cut(s)	972
FriOI	GRGCYC	1 cut(s)	480
Fsp4HI	GCNGC	1 cut(s)	814
FspBI	CTAG	3 cut(s)	65, 146, 438
GluI	GCNGC	1 cut(s)	814
GsuI	CTGGAG	1 cut(s)	879
HaeIII	GGCC	2 cut(s)	63, 418
HapII	CCGG	2 cut(s)	151, 183
Hin1II	CATG	3 cut(s)	285, 307, 1037
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HinfI	GANTC	5 cut(s)	210, 434, 763, 974, 989
HpaI	GTTAAC	1 cut(s)	175
HpaII	CCGG	2 cut(s)	151, 183
HphI	GGTGA	2 cut(s)	347, 524
Hpy166II	GTNNAC	4 cut(s)	8, 10, 175, 537
Hpy188I	TCNGA	5 cut(s)	114, 400, 524, 781, 847
Hpy188III	TCNNGA	5 cut(s)	146, 247, 295, 304, 438
Hpy8I	GTNNAC	4 cut(s)	8, 10, 175, 537
HpyAV	CCTTC	3 cut(s)	134, 203, 975
HpyCH4IV	ACGT	3 cut(s)	774, 819, 994
HpyCH4V	TGCA	8 cut(s)	120, 200, 315, 734, 803, 875, 913, 1033
HpyF10VI	GCNNNNNNNGC	3 cut(s)	524, 731, 900
HpyF3I	CTNAG	1 cut(s)	521
HpySE526I	ACGT	3 cut(s)	774, 819, 994
Hsp92II	CATG	3 cut(s)	285, 307, 1037
KspAI	GTTAAC	1 cut(s)	175
Kzo9I	GATC	3 cut(s)	614, 1006, 1021
LmnI	GCTCC	3 cut(s)	475, 860, 1017
LpnPI	CCDG	9 cut(s)	12, 164, 196, 210, 467, 494, 660, 843, 849
LweI	GCATC	3 cut(s)	309, 950, 1020
MaeI	CTAG	3 cut(s)	65, 146, 438
MaeII	ACGT	3 cut(s)	774, 819, 994
MaeIII	GTNAC	1 cut(s)	105
MalI	GATC	3 cut(s)	616, 1008, 1023
MboI	GATC	3 cut(s)	614, 1006, 1021
MboII	GAAGA	2 cut(s)	104, 534
MfeI	CAATTG	2 cut(s)	528, 1025
MflI	RGATCY	1 cut(s)	614
MhlI	GDGCHC	1 cut(s)	480
MnlI	CCTC	8 cut(s)	120, 272, 530, 583, 631, 710, 755, 993
Mph1103I	ATGCAT	1 cut(s)	1035
MseI	TTAA	8 cut(s)	72, 81, 132, 174, 350, 563, 633, 920
MspA1I	CMGCKG	1 cut(s)	431
MspCI	CTTAAG	1 cut(s)	632
MspI	CCGG	2 cut(s)	151, 183
MspR9I	CCNGG	2 cut(s)	183, 482
MunI	CAATTG	2 cut(s)	528, 1025
Mva1269I	GAATGC	1 cut(s)	317
MvaI	CCWGG	1 cut(s)	482
MwoI	GCNNNNNNNGC	3 cut(s)	524, 731, 900
NciI	CCSGG	1 cut(s)	183
NdeII	GATC	3 cut(s)	614, 1006, 1021
NlaIII	CATG	3 cut(s)	285, 307, 1037
NlaIV	GGNNCC	1 cut(s)	477
NsiI	ATGCAT	1 cut(s)	1035
NspI	RCATGY	1 cut(s)	285
NspV	TTCGAA	1 cut(s)	739
PagI	TCATGA	1 cut(s)	303
PctI	GAATGC	1 cut(s)	317
PfeI	GAWTC	5 cut(s)	210, 434, 763, 974, 989
PinAI	ACCGGT	1 cut(s)	150
PkrI	GCNGC	1 cut(s)	815
Ppu21I	YACGTR	1 cut(s)	995
PsiI	TTATAA	1 cut(s)	576
Psp6I	CCWGG	1 cut(s)	480
PspGI	CCWGG	1 cut(s)	480
PspN4I	GGNNCC	1 cut(s)	477
PspPI	GGNCC	1 cut(s)	416
PsuI	RGATCY	1 cut(s)	614
RsaI	GTAC	1 cut(s)	9
RsaNI	GTAC	1 cut(s)	8
SaqAI	TTAA	8 cut(s)	72, 81, 132, 174, 350, 563, 633, 920
SatI	GCNGC	1 cut(s)	814
Sau3AI	GATC	3 cut(s)	614, 1006, 1021
Sau96I	GGNCC	1 cut(s)	416
ScrFI	CCNGG	2 cut(s)	183, 482
SduI	GDGCHC	1 cut(s)	480
SfaNI	GCATC	3 cut(s)	309, 950, 1020
SfuI	TTCGAA	1 cut(s)	739
SmlI	CTYRAG	2 cut(s)	632, 746
SmoI	CTYRAG	2 cut(s)	632, 746
SsiI	CCGC	2 cut(s)	431, 814
SspMI	CTAG	3 cut(s)	65, 146, 438
StyD4I	CCNGG	2 cut(s)	181, 480
TaiI	ACGT	3 cut(s)	777, 822, 997
TaqI	TCGA	3 cut(s)	294, 681, 739
TatI	WGTACW	1 cut(s)	7
TauI	GCSGC	1 cut(s)	816
TfiI	GAWTC	5 cut(s)	210, 434, 763, 974, 989
Tru1I	TTAA	8 cut(s)	72, 81, 132, 174, 350, 563, 633, 920
Tru9I	TTAA	8 cut(s)	72, 81, 132, 174, 350, 563, 633, 920
TscAI	CASTG	2 cut(s)	612, 712
TspDTI	ATGAA	3 cut(s)	27, 259, 957
TspGWI	ACGGA	1 cut(s)	961
TspRI	CASTG	2 cut(s)	612, 712
Vha464I	CTTAAG	1 cut(s)	632
XapI	RAATTY	3 cut(s)	266, 638, 696
XbaI	TCTAGA	2 cut(s)	145, 437
XceI	RCATGY	1 cut(s)	285
XspI	CTAG	3 cut(s)	65, 146, 438
Zsp2I	ATGCAT	1 cut(s)	1035

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.