Rroxscaffold_1G00007790

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0001041
Physical Location & Seq
Forward (+)
9947486 .. 9948668
1183 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00007790.1

Sequence Viewer

Length: 849 bp
ATGTCGTTTCTGGACGACGATGTAGTTGGGCTAATTGCTGACAAGGTTTGTGAGAAAGATGATAGAAAGTCCTTCTCCGAGATTCCCAAATGTAGTCGATTTGGAAGTGAAGTATATGTTAGGACTGAGGCCGACCTTGAATTCATAGCCCAAACTTGTCCTAGACTCGAGAGCATTACGGTCCACTCCGTTATCTTTATAGAGACTGATGATATTGTTTTGGGGCCAAGAAGTCTAGTTGCTTTGGGGAATGGGTGTCCACAATTGTCCAAAGTTAAGCTTGTGGGGAGGGAAGCAGTAGGGGATTCGGGAGTTGTGGCGCTTGTTCATTCAGCACGGAACTTGAAGGCTCTGGTTTTGGCATGTGATTTGTGGATCTCAGATGAAGCATTGAGAGCCATTGGGTACGCATCTTCCATTAGCACGTTGAAGTTGCCAGGGTCTCGCATTAAGGATGTGGAATTGCTTGTTTTAGCAAATGGGACATCTTCCATTAGCACTTTGGAGTTGGTAAGGTGTCGCAAGATTACGGATGTGGGATTGGGTTTTTTGGCAAATGGGTCTATCTCGAAAACCCTCAAGAAATTGGTCCTTGATGGCTGCAACAAAATCACTGATACTGGAGTCCAGCTTTTGCGGAAAATGGAATTGCTATTGGTTAATCTTCAGACCGTGTCAAACAGTACCATGGTTGCTCTTGCATGGAACTGCCCCAACTTGGAAATACTTGATTTACGGGGCTTGATTTTCAGAACTAGAAGAGTCGTCAAGTTCATTGATATCTTCATGCAGTCCTTCACATTGAATGTAATATTCATGCAGTCCTTCAGATTGAATGAGCAGATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

282

Amino Acids

31.06

Weight (kDa)

7.51

Isoelectric Point (pI)

30.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7885 PF25372 126 - 221 8e-10 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 637
AclWI GGATC 1 cut(s) 383
AcsI RAATTY 1 cut(s) 140
AcuI CTGAAG 2 cut(s) 650, 811
AfaI GTAC 2 cut(s) 407, 685
AfiI CCNNNNNNNGG 1 cut(s) 718
AgsI TTSAA 5 cut(s) 140, 346, 430, 805, 835
AjnI CCWGG 1 cut(s) 436
AluBI AGCT 2 cut(s) 280, 631
AluI AGCT 2 cut(s) 280, 631
Alw26I GTCTC 2 cut(s) 197, 447
AlwI GGATC 1 cut(s) 383
Ama87I CYCGRG 1 cut(s) 167
AoxI GGCC 2 cut(s) 129, 224
ApeKI GCWGC 1 cut(s) 600
ApoI RAATTY 1 cut(s) 140
AspLEI GCGC 1 cut(s) 322
AspS9I GGNCC 3 cut(s) 181, 224, 589
AvaI CYCGRG 1 cut(s) 167
AvaII GGWCC 2 cut(s) 181, 589
BaeI ACNNNNGTAYC 2 cut(s) 609, 642
BbvI GCAGC 1 cut(s) 587
BccI CCATC 1 cut(s) 590
BciT130I CCWGG 1 cut(s) 438
BcoDI GTCTC 2 cut(s) 197, 447
BfaI CTAG 3 cut(s) 162, 236, 756
BfoI RGCGCY 1 cut(s) 323
BisI GCNGC 1 cut(s) 601
BlsI GCNGC 1 cut(s) 602
Bme1390I CCNGG 1 cut(s) 438
Bme18I GGWCC 2 cut(s) 181, 589
BmeT110I CYCGRG 1 cut(s) 167
BmgT120I GGNCC 3 cut(s) 181, 224, 589
BmiI GGNNCC 1 cut(s) 225
BmrFI CCNGG 1 cut(s) 438
BmsI GCATC 1 cut(s) 419
BpmI CTGGAG 1 cut(s) 642
BpuEI CTTGAG 1 cut(s) 563
BsaI GGTCTC 1 cut(s) 447
BsaJI CCNNGG 2 cut(s) 437, 687
Bsc4I CCNNNNNNNGG 1 cut(s) 718
Bse1I ACTGG 1 cut(s) 625
BseBI CCWGG 1 cut(s) 438
BseDI CCNNGG 2 cut(s) 437, 687
BseGI GGATG 2 cut(s) 460, 538
BseLI CCNNNNNNNGG 1 cut(s) 718
BseMII CTCAG 2 cut(s) 117, 393
BseNI ACTGG 1 cut(s) 625
BseXI GCAGC 1 cut(s) 587
BshFI GGCC 2 cut(s) 131, 226
BsiHKCI CYCGRG 1 cut(s) 167
BslFI GGGAC 1 cut(s) 496
BslI CCNNNNNNNGG 1 cut(s) 718
BsmAI GTCTC 2 cut(s) 197, 447
BsmFI GGGAC 1 cut(s) 496
BsnI GGCC 2 cut(s) 131, 226
Bso31I GGTCTC 1 cut(s) 447
BsoBI CYCGRG 1 cut(s) 167
Bsp143I GATC 1 cut(s) 375
Bsp19I CCATGG 1 cut(s) 687
BspACI CCGC 1 cut(s) 637
BspANI GGCC 2 cut(s) 131, 226
BspCNI CTCAG 2 cut(s) 118, 392
BspLI GGNNCC 1 cut(s) 225
BspPI GGATC 1 cut(s) 383
BspTNI GGTCTC 1 cut(s) 447
BsrI ACTGG 1 cut(s) 625
BssECI CCNNGG 2 cut(s) 437, 687
BssMI GATC 1 cut(s) 375
BssT1I CCWWGG 1 cut(s) 687
Bst2UI CCWGG 1 cut(s) 438
Bst4CI ACNGT 3 cut(s) 181, 673, 683
Bst6I CTCTTC 1 cut(s) 754
BstDEI CTNAG 2 cut(s) 126, 379
BstDSI CCRYGG 1 cut(s) 687
BstF5I GGATG 2 cut(s) 460, 538
BstH2I RGCGCY 1 cut(s) 323
BstHHI GCGC 1 cut(s) 322
BstKTI GATC 1 cut(s) 378
BstMAI GTCTC 2 cut(s) 197, 447
BstMBI GATC 1 cut(s) 375
BstMWI GCNNNNNNNGC 1 cut(s) 395
BstNI CCWGG 1 cut(s) 438
BstNSI RCATGY 1 cut(s) 366
BstSCI CCNGG 1 cut(s) 436
BstV1I GCAGC 1 cut(s) 587
BstX2I RGATCY 1 cut(s) 375
BstYI RGATCY 1 cut(s) 375
BsuRI GGCC 2 cut(s) 131, 226
BtgI CCRYGG 1 cut(s) 687
BtsCI GGATG 2 cut(s) 460, 538
BtsIMutI CAGTG 1 cut(s) 612
CfoI GCGC 1 cut(s) 322
Cfr13I GGNCC 3 cut(s) 181, 224, 589
Csp6I GTAC 2 cut(s) 406, 684
CviAII CATG 5 cut(s) 363, 688, 702, 787, 817
CviQI GTAC 2 cut(s) 406, 684
DdeI CTNAG 2 cut(s) 126, 379
DpnI GATC 1 cut(s) 377
DpnII GATC 1 cut(s) 375
Eam1104I CTCTTC 1 cut(s) 754
EarI CTCTTC 1 cut(s) 754
Eco130I CCWWGG 1 cut(s) 687
Eco31I GGTCTC 1 cut(s) 447
Eco32I GATATC 1 cut(s) 781
Eco47I GGWCC 2 cut(s) 181, 589
Eco57I CTGAAG 2 cut(s) 650, 811
Eco88I CYCGRG 1 cut(s) 167
EcoRI GAATTC 1 cut(s) 140
EcoRII CCWGG 1 cut(s) 436
EcoRV GATATC 1 cut(s) 781
EcoT14I CCWWGG 1 cut(s) 687
ErhI CCWWGG 1 cut(s) 687
FaeI CATG 5 cut(s) 366, 691, 705, 790, 820
FaiI YATR 9 cut(s) 115, 117, 146, 200, 364, 689, 703, 788, 818
FalI AAGNNNNNCTT 2 cut(s) 264, 296
FaqI GGGAC 1 cut(s) 496
FatI CATG 5 cut(s) 362, 687, 701, 786, 816
Fnu4HI GCNGC 1 cut(s) 601
FokI GGATG 2 cut(s) 467, 545
Fsp4HI GCNGC 1 cut(s) 601
FspBI CTAG 3 cut(s) 162, 236, 756
GlaI GCGC 1 cut(s) 321
GluI GCNGC 1 cut(s) 601
GsuI CTGGAG 1 cut(s) 642
HaeII RGCGCY 1 cut(s) 323
HaeIII GGCC 2 cut(s) 131, 226
HhaI GCGC 1 cut(s) 322
Hin1II CATG 5 cut(s) 366, 691, 705, 790, 820
Hin6I GCGC 1 cut(s) 320
HinP1I GCGC 1 cut(s) 320
HindIII AAGCTT 1 cut(s) 278
HinfI GANTC 5 cut(s) 82, 165, 305, 624, 762
Hpy166II GTNNAC 2 cut(s) 184, 260
Hpy188I TCNGA 5 cut(s) 79, 382, 669, 752, 830
Hpy188III TCNNGA 5 cut(s) 11, 169, 309, 568, 580
Hpy8I GTNNAC 2 cut(s) 184, 260
Hpy99I CGWCG 1 cut(s) 20
HpyAV CCTTC 4 cut(s) 82, 340, 805, 835
HpyCH4III ACNGT 3 cut(s) 181, 673, 683
HpyCH4IV ACGT 1 cut(s) 425
HpyCH4V TGCA 4 cut(s) 603, 701, 790, 820
HpyF10VI GCNNNNNNNGC 1 cut(s) 395
HpyF3I CTNAG 2 cut(s) 126, 379
HpySE526I ACGT 1 cut(s) 425
Hsp92II CATG 5 cut(s) 366, 691, 705, 790, 820
HspAI GCGC 1 cut(s) 320
Kzo9I GATC 1 cut(s) 375
LpnPI CCDG 5 cut(s) 338, 423, 450, 606, 641
Lsp1109I GCAGC 1 cut(s) 587
LweI GCATC 1 cut(s) 419
MaeI CTAG 3 cut(s) 162, 236, 756
MaeII ACGT 1 cut(s) 425
MalI GATC 1 cut(s) 377
MboI GATC 1 cut(s) 375
MboII GAAGA 5 cut(s) 405, 480, 656, 771, 775
MfeI CAATTG 1 cut(s) 263
MflI RGATCY 1 cut(s) 375
MluCI AATT 6 cut(s) 33, 140, 263, 461, 584, 647
MlyI GAGTC 3 cut(s) 159, 633, 771
MnlI CCTC 3 cut(s) 121, 282, 587
MseI TTAA 3 cut(s) 276, 450, 660
MspR9I CCNGG 1 cut(s) 438
MunI CAATTG 1 cut(s) 263
MvaI CCWGG 1 cut(s) 438
MwoI GCNNNNNNNGC 1 cut(s) 395
NcoI CCATGG 1 cut(s) 687
NdeII GATC 1 cut(s) 375
NlaIII CATG 5 cut(s) 366, 691, 705, 790, 820
NlaIV GGNNCC 1 cut(s) 225
NspI RCATGY 1 cut(s) 366
PaeR7I CTCGAG 1 cut(s) 167
PfeI GAWTC 2 cut(s) 82, 305
PflFI GACNNNGTC 1 cut(s) 673
PkrI GCNGC 1 cut(s) 602
PleI GAGTC 3 cut(s) 159, 632, 770
PpsI GAGTC 3 cut(s) 159, 632, 770
Psp6I CCWGG 1 cut(s) 436
PspGI CCWGG 1 cut(s) 436
PspN4I GGNNCC 1 cut(s) 225
PspPI GGNCC 3 cut(s) 181, 224, 589
PsuI RGATCY 1 cut(s) 375
PsyI GACNNNGTC 1 cut(s) 673
RsaI GTAC 2 cut(s) 407, 685
RsaNI GTAC 2 cut(s) 406, 684
SaqAI TTAA 3 cut(s) 276, 450, 660
SatI GCNGC 1 cut(s) 601
Sau3AI GATC 1 cut(s) 375
Sau96I GGNCC 3 cut(s) 181, 224, 589
SchI GAGTC 3 cut(s) 159, 633, 771
ScrFI CCNGG 1 cut(s) 438
SetI ASST 6 cut(s) 48, 138, 282, 428, 518, 633
SfaNI GCATC 1 cut(s) 419
Sfr274I CTCGAG 1 cut(s) 167
SinI GGWCC 2 cut(s) 181, 589
SlaI CTCGAG 1 cut(s) 167
SmlI CTYRAG 2 cut(s) 167, 578
SmoI CTYRAG 2 cut(s) 167, 578
Sse9I AATT 6 cut(s) 33, 140, 263, 461, 584, 647
SsiI CCGC 1 cut(s) 637
SspI AATATT 1 cut(s) 813
SspMI CTAG 3 cut(s) 162, 236, 756
StyD4I CCNGG 1 cut(s) 436
StyI CCWWGG 1 cut(s) 687
TaaI ACNGT 3 cut(s) 181, 673, 683
TaiI ACGT 1 cut(s) 428
TaqI TCGA 3 cut(s) 97, 168, 569
TasI AATT 6 cut(s) 33, 140, 263, 461, 584, 647
TfiI GAWTC 2 cut(s) 82, 305
Tru1I TTAA 3 cut(s) 276, 450, 660
Tru9I TTAA 3 cut(s) 276, 450, 660
TscAI CASTG 1 cut(s) 619
TseI GCWGC 1 cut(s) 600
TspDTI ATGAA 6 cut(s) 133, 317, 399, 763, 775, 805
TspGWI ACGGA 3 cut(s) 178, 352, 545
TspRI CASTG 1 cut(s) 619
Tth111I GACNNNGTC 1 cut(s) 673
VpaK11BI GGWCC 2 cut(s) 181, 589
XapI RAATTY 1 cut(s) 140
XceI RCATGY 1 cut(s) 366
XcmI CCANNNNNNNNNTGG 1 cut(s) 499
XhoI CTCGAG 1 cut(s) 167
XspI CTAG 3 cut(s) 162, 236, 756
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.