Rh5CG524900

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0001041
Physical Location & Seq
Reverse (-)
73522396 .. 73523882
1487 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG524900.1

Sequence Viewer

Length: 300 bp
ATGTCATTTCTGGACGACGATGTAGTTGGCCTAATTGCTACCAAGGTTTGTGAGAAAGATGATAGAAAGTCCTTCTCCGAGGTCTGCAAGCAATGGTGTAGAGTAGAAGGTCTAAGCCGATCATCACTTGAGGTTTTCCATAACCGGCCCGGTTTGCCCCTTGGTGCACTAACTAGATTCCCAAATGTAGTCGATTTGGAAGTAAAGTATGTTAGAACTGAGGCCGACCTTGAATTCATAGCCCAAACTTGTCCTAGACTCGAGAGCATTACGGTCCACTCCGATATCCGATCCGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

99

Amino Acids

11.21

Weight (kDa)

5.32

Isoelectric Point (pI)

38.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box_5 PF18511 4 - 41 1.6e-06 F-box
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 285
AcsI RAATTY 1 cut(s) 233
AgsI TTSAA 1 cut(s) 233
Alw21I GWGCWC 1 cut(s) 169
Alw44I GTGCAC 1 cut(s) 165
AlwI GGATC 1 cut(s) 285
Ama87I CYCGRG 1 cut(s) 260
AoxI GGCC 3 cut(s) 28, 146, 222
ApaLI GTGCAC 1 cut(s) 165
ApoI RAATTY 1 cut(s) 233
AspS9I GGNCC 2 cut(s) 147, 274
AsuC2I CCSGG 1 cut(s) 150
AvaI CYCGRG 1 cut(s) 260
AvaII GGWCC 1 cut(s) 274
BaeGI GKGCMC 1 cut(s) 169
Bbv12I GWGCWC 1 cut(s) 169
BcnI CCSGG 1 cut(s) 150
BfaI CTAG 2 cut(s) 174, 255
Bme1390I CCNGG 1 cut(s) 150
Bme18I GGWCC 1 cut(s) 274
BmeT110I CYCGRG 1 cut(s) 260
BmgT120I GGNCC 2 cut(s) 147, 274
BmrFI CCNGG 1 cut(s) 150
BpuEI CTTGAG 1 cut(s) 149
BpuMI CCSGG 1 cut(s) 150
BsaJI CCNNGG 3 cut(s) 42, 78, 160
Bse118I RCCGGY 1 cut(s) 144
Bse3DI GCAATG 1 cut(s) 98
BseDI CCNNGG 3 cut(s) 42, 78, 160
BseMI GCAATG 1 cut(s) 98
BseMII CTCAG 1 cut(s) 210
BseSI GKGCMC 1 cut(s) 169
BshFI GGCC 3 cut(s) 30, 148, 224
BsiHKAI GWGCWC 1 cut(s) 169
BsiHKCI CYCGRG 1 cut(s) 260
BsiSI CCGG 2 cut(s) 145, 150
BsnI GGCC 3 cut(s) 30, 148, 224
BsoBI CYCGRG 1 cut(s) 260
Bsp1286I GDGCHC 1 cut(s) 169
Bsp143I GATC 2 cut(s) 119, 290
BspANI GGCC 3 cut(s) 30, 148, 224
BspCNI CTCAG 1 cut(s) 211
BspPI GGATC 1 cut(s) 285
BsrDI GCAATG 1 cut(s) 98
BsrFI RCCGGY 1 cut(s) 144
BssAI RCCGGY 1 cut(s) 144
BssECI CCNNGG 3 cut(s) 42, 78, 160
BssMI GATC 2 cut(s) 119, 290
BssT1I CCWWGG 2 cut(s) 42, 160
Bst4CI ACNGT 1 cut(s) 274
BstC8I GCNNGC 1 cut(s) 89
BstDEI CTNAG 2 cut(s) 113, 219
BstKTI GATC 2 cut(s) 122, 293
BstMBI GATC 2 cut(s) 119, 290
BstMWI GCNNNNNNNGC 1 cut(s) 154
BstSCI CCNGG 1 cut(s) 148
BstSLI GKGCMC 1 cut(s) 169
BsuRI GGCC 3 cut(s) 30, 148, 224
Cac8I GCNNGC 1 cut(s) 89
Cfr10I RCCGGY 1 cut(s) 144
Cfr13I GGNCC 2 cut(s) 147, 274
CviJI RGCY 5 cut(s) 30, 117, 148, 224, 242
CviKI_1 RGCY 5 cut(s) 30, 117, 148, 224, 242
DdeI CTNAG 2 cut(s) 113, 219
DpnI GATC 2 cut(s) 121, 292
DpnII GATC 2 cut(s) 119, 290
Eco130I CCWWGG 2 cut(s) 42, 160
Eco32I GATATC 1 cut(s) 286
Eco47I GGWCC 1 cut(s) 274
Eco88I CYCGRG 1 cut(s) 260
EcoRI GAATTC 1 cut(s) 233
EcoRV GATATC 1 cut(s) 286
EcoT14I CCWWGG 2 cut(s) 42, 160
ErhI CCWWGG 2 cut(s) 42, 160
FaiI YATR 4 cut(s) 141, 210, 239, 298
FspBI CTAG 2 cut(s) 174, 255
HaeIII GGCC 3 cut(s) 30, 148, 224
HapII CCGG 2 cut(s) 145, 150
HinfI GANTC 2 cut(s) 177, 258
HpaII CCGG 2 cut(s) 145, 150
Hpy166II GTNNAC 2 cut(s) 167, 277
Hpy188I TCNGA 3 cut(s) 79, 283, 290
Hpy188III TCNNGA 2 cut(s) 11, 262
Hpy8I GTNNAC 2 cut(s) 167, 277
Hpy99I CGWCG 1 cut(s) 20
HpyAV CCTTC 2 cut(s) 82, 101
HpyCH4III ACNGT 1 cut(s) 274
HpyCH4V TGCA 2 cut(s) 87, 167
HpyF10VI GCNNNNNNNGC 1 cut(s) 154
HpyF3I CTNAG 2 cut(s) 113, 219
Kzo9I GATC 2 cut(s) 119, 290
LpnPI CCDG 2 cut(s) 158, 163
MaeI CTAG 2 cut(s) 174, 255
MalI GATC 2 cut(s) 121, 292
MboI GATC 2 cut(s) 119, 290
MhlI GDGCHC 1 cut(s) 169
MluCI AATT 2 cut(s) 33, 233
MlyI GAGTC 1 cut(s) 252
MnlI CCTC 3 cut(s) 73, 124, 214
MspI CCGG 2 cut(s) 145, 150
MspR9I CCNGG 1 cut(s) 150
MwoI GCNNNNNNNGC 1 cut(s) 154
NciI CCSGG 1 cut(s) 150
NdeII GATC 2 cut(s) 119, 290
PaeR7I CTCGAG 1 cut(s) 260
PfeI GAWTC 1 cut(s) 177
PleI GAGTC 1 cut(s) 252
PpsI GAGTC 1 cut(s) 252
PspPI GGNCC 2 cut(s) 147, 274
Sau3AI GATC 2 cut(s) 119, 290
Sau96I GGNCC 2 cut(s) 147, 274
SchI GAGTC 1 cut(s) 252
ScrFI CCNGG 1 cut(s) 150
SduI GDGCHC 1 cut(s) 169
SetI ASST 5 cut(s) 48, 84, 112, 135, 231
Sfr274I CTCGAG 1 cut(s) 260
SinI GGWCC 1 cut(s) 274
SlaI CTCGAG 1 cut(s) 260
SmlI CTYRAG 2 cut(s) 128, 260
SmoI CTYRAG 2 cut(s) 128, 260
Sse9I AATT 2 cut(s) 33, 233
SspMI CTAG 2 cut(s) 174, 255
StyD4I CCNGG 1 cut(s) 148
StyI CCWWGG 2 cut(s) 42, 160
TaaI ACNGT 1 cut(s) 274
TaqI TCGA 2 cut(s) 192, 261
TasI AATT 2 cut(s) 33, 233
TfiI GAWTC 1 cut(s) 177
TspDTI ATGAA 1 cut(s) 226
TspGWI ACGGA 1 cut(s) 283
VneI GTGCAC 1 cut(s) 165
VpaK11BI GGWCC 1 cut(s) 274
XapI RAATTY 1 cut(s) 233
XhoI CTCGAG 1 cut(s) 260
XspI CTAG 2 cut(s) 174, 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.