Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001041

Physical Location & Seq

Genomic Coordinates Forward (+)

63654018 .. 63655269

Gene Structure 1252 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004917

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGATGAGTAGCTCAAGCCGTTTTGTTCATTGCTTAGCTGCCGCCGGGGAAGATCATCAGGTTAATTTCTCAATATCTGTTTCATTCTCCGCACACACACAGGAGCAAAAGAAGCACAACGGTAGAATGGTTTCACATACAAGAGAATTAGGGAAAATTTTCTTGATGAGCGATGATTTTGTTGGTGTAATCATTAGCAAGGTCAGCATCCAAGATGATAGAAAATCGTTCTCTGAGGTCTGCAAGCAATGGTTTAAAGTGGAAGGTCTAAGCCGATCGTCACTTCGCGTTTTTGCTGACCGACCTGGCTTTTCCCTGGCTGCACTCACTAGATTCCCAAATCTAGTTCATCTGGAAATATTTGAGCTTAAGACGGACATCGAAATCGAAATCATAGCCCAGACATGCCGCAAAATAGAGAGCATCACCGTTTTCTGCTTTGATGCGCATCAGGAAGGTCATGGTGCCCTCAGAGCAATTGGTTTGGCATCTTCAATTAGCATTTTGGAGTTGGTAGGTTGTTCCGGCATCAAGGATATGAGAATGGGGTTTTTGGCAAATGGGTCTACCTCAAAAACCCTCAAGAAATTGGTCCTAAATCTTTGCCGGGGAATCACTGATACTGGGGTCAAGCTTTTGCAGAAAATGTGTAGCTTGGAGCACCTGGAATTGTCCTACTGTGGGAGGAGAGGAGAAATCACTGATATTGGAGGTGTGGCAATCACTGCAATTCAAACGCTCAAGGAAATAAAATTGGATGGTCTTCTGGGTGTATCAGACCCTACCATGCTTGCTCTTGCCCAGAATTGCTGCAACTTGGAAATACTTGATTTAGAGGGATGTCAAGGTGTAACTGGAGCTGGCATTCGTGCATTTTCAAGTCATCAGTGCTTGAAAAGCCTTGTGTTGCTAGGCTTAAGGAACTTTAATCTTTCTGATGTGGAAAGCGTAGCGTTTGGATGCCCCTCATTGGAGTCGGAATCTGTTGTGGTGGATTCACGGTGGAAGCTGGATGCAACATTGATGCAGGATAACACTAGAAGAGTCCTCAAATTCACTGAAATGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_6

Protein Analysis

357

Amino Acids

39.11

Weight (kDa)

6.79

Isoelectric Point (pI)

33.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box_5	PF18511	56 - 93	6.2e-07	F-box
DUF7885	PF25372	120 - 313	4.8e-08	Leucine Rich Repeat Domain of unknown function (DUF7885)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001041)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40700 FvH4_5g10370 FvH4_5g12160 FvH4_5g12180 FvH4_5g12190 FvH4_5g12200 FvH4_5g12210 FvH4_5g12211
rosa_chinensis	RchiOBHm_Chr5g0073461 RchiOBHm_Chr5g0073471 RchiOBHm_Chr7g0185341 RchiOBHm_Chr7g0185381 RchiOBHm_Chr7g0185401
rosa_laevigata	RLG00000004916 RLG00000004917 RLG00000004921 RLG00000019401 RLG00000036387
rosa_multiflora	Rmu_co8366929.1_g000001 Rmu_co8392105.1_g000001 Rmu_sc0001761.1_g000011 Rmu_sc0001761.1_g000012 Rmu_sc0001761.1_g000013 Rmu_sc0001761.1_g000016 Rmu_sc0004670.1_g000010 Rmu_sc0008496.1_g000005 Rmu_sc0023242.1_g000005 Rmu_sc0023242.1_g000006 Rmu_ssc0000226.1_g000026 Rmu_ssc0000226.1_g000027
rosa_roxburghii	Rroxscaffold_1G00007790 Rroxscaffold_1G00017220 Rroxscaffold_2G00110040 Rroxscaffold_3G00269000 Rroxscaffold_3G00269010
rosa_rugosa	Rorug05G0423700 Rorug06G0468100 Rorug06G0468700
rosa_samantha	Rh2CG354600 Rh2CG354700 Rh2DG393800 Rh5AG481000 Rh5CG455400 Rh5CG524900 Rh5DG514100 Rh7AG074000 Rh7AG074100 Rh7AG074200 Rh7AG074600 Rh7BG072600 Rh7BG073200 Rh7BG073300 Rh7BG073400 Rh7DG073200 Rh7DG073600 Rh7DG073700 Rh7DG073800
rosa_wichuraiana	Rw2G030200 Rw7G006080 Rw7G006120 Rw7G006130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	447
AccB1I	GGYRCC	1 cut(s)	464
AccI	GTMKAC	1 cut(s)	566
AccII	CGCG	1 cut(s)	288
AciI	CCGC	3 cut(s)	42, 90, 409
AcsI	RAATTY	2 cut(s)	156, 1052
AfiI	CCNNNNNNNGG	2 cut(s)	681, 970
AflII	CTTAAG	2 cut(s)	368, 916
AgsI	TTSAA	4 cut(s)	495, 734, 879, 895
AjnI	CCWGG	3 cut(s)	304, 315, 663
AluBI	AGCT	7 cut(s)	12, 38, 367, 634, 654, 860, 1009
AluI	AGCT	7 cut(s)	12, 38, 367, 634, 654, 860, 1009
Alw21I	GWGCWC	1 cut(s)	663
ApeKI	GCWGC	3 cut(s)	38, 320, 810
ApoI	RAATTY	2 cut(s)	156, 1052
Asp700I	GAANNNNTTC	2 cut(s)	130, 158
AspLEI	GCGC	1 cut(s)	448
AspS9I	GGNCC	1 cut(s)	592
AsuC2I	CCSGG	2 cut(s)	46, 608
AsuHPI	GGTGA	1 cut(s)	418
AvaII	GGWCC	1 cut(s)	592
BaeGI	GKGCMC	1 cut(s)	469
BaeI	ACNNNNGTAYC	2 cut(s)	612, 645
BanI	GGYRCC	1 cut(s)	464
BbsI	GAAGAC	1 cut(s)	755
Bbv12I	GWGCWC	1 cut(s)	663
BbvI	GCAGC	3 cut(s)	25, 307, 797
BccI	CCATC	1 cut(s)	752
BceAI	ACGGC	1 cut(s)	3
BciT130I	CCWGG	3 cut(s)	306, 317, 665
BcnI	CCSGG	2 cut(s)	46, 608
BfaI	CTAG	4 cut(s)	330, 344, 911, 1038
BfrI	CTTAAG	2 cut(s)	368, 916
BisI	GCNGC	5 cut(s)	39, 42, 321, 409, 811
BlpI	GCTNAGC	1 cut(s)	34
BlsI	GCNGC	5 cut(s)	40, 43, 322, 410, 812
Bme1390I	CCNGG	5 cut(s)	46, 306, 317, 608, 665
Bme18I	GGWCC	1 cut(s)	592
BmgT120I	GGNCC	1 cut(s)	592
BmiI	GGNNCC	1 cut(s)	466
BmrFI	CCNGG	5 cut(s)	46, 306, 317, 608, 665
BmrI	ACTGGG	1 cut(s)	633
BmsI	GCATC	9 cut(s)	216, 432, 433, 457, 497, 537, 950, 1003, 1014
BmuI	ACTGGG	1 cut(s)	633
BpiI	GAAGAC	1 cut(s)	755
BpmI	CTGGAG	1 cut(s)	876
Bpu1102I	GCTNAGC	1 cut(s)	34
BpuEI	CTTGAG	2 cut(s)	566, 725
BpuMI	CCSGG	2 cut(s)	46, 608
BsaBI	GATNNNNATC	1 cut(s)	447
BsaJI	CCNNGG	3 cut(s)	45, 315, 607
Bsc4I	CCNNNNNNNGG	2 cut(s)	681, 970
Bse1I	ACTGG	2 cut(s)	628, 859
Bse3DI	GCAATG	2 cut(s)	28, 254
Bse8I	GATNNNNATC	1 cut(s)	447
BseBI	CCWGG	3 cut(s)	306, 317, 665
BseDI	CCNNGG	3 cut(s)	45, 315, 607
BseGI	GGATG	5 cut(s)	207, 763, 845, 965, 1018
BseJI	GATNNNNATC	1 cut(s)	447
BseLI	CCNNNNNNNGG	2 cut(s)	681, 970
BseMI	GCAATG	2 cut(s)	28, 254
BseMII	CTCAG	2 cut(s)	225, 484
BseNI	ACTGG	2 cut(s)	628, 859
BseRI	GAGGAG	2 cut(s)	700, 705
BseSI	GKGCMC	1 cut(s)	469
BseXI	GCAGC	3 cut(s)	25, 307, 797
BsgI	GTGCAG	1 cut(s)	306
Bsh1236I	CGCG	1 cut(s)	288
Bsh1285I	CGRYCG	1 cut(s)	278
BshNI	GGYRCC	1 cut(s)	464
BsiEI	CGRYCG	1 cut(s)	278
BsiHKAI	GWGCWC	1 cut(s)	663
BsiSI	CCGG	3 cut(s)	45, 525, 607
BslI	CCNNNNNNNGG	2 cut(s)	681, 970
BsmI	GAATGC	1 cut(s)	864
Bsp1286I	GDGCHC	2 cut(s)	469, 663
Bsp143I	GATC	2 cut(s)	52, 275
Bsp1720I	GCTNAGC	1 cut(s)	34
BspACI	CCGC	3 cut(s)	42, 90, 409
BspCNI	CTCAG	2 cut(s)	226, 483
BspFNI	CGCG	1 cut(s)	288
BspLI	GGNNCC	1 cut(s)	466
BspT107I	GGYRCC	1 cut(s)	464
BspTI	CTTAAG	2 cut(s)	368, 916
BsrDI	GCAATG	2 cut(s)	28, 254
BsrI	ACTGG	2 cut(s)	628, 859
BssECI	CCNNGG	3 cut(s)	45, 315, 607
BssMI	GATC	2 cut(s)	52, 275
Bst2UI	CCWGG	3 cut(s)	306, 317, 665
Bst4CI	ACNGT	4 cut(s)	122, 430, 680, 1002
Bst6I	CTCTTC	1 cut(s)	1036
BstAFI	CTTAAG	2 cut(s)	368, 916
BstAPI	GCANNNNNTGC	1 cut(s)	725
BstC8I	GCNNGC	3 cut(s)	245, 792, 862
BstDEI	CTNAG	4 cut(s)	34, 234, 269, 470
BstF5I	GGATG	5 cut(s)	207, 763, 845, 965, 1018
BstFNI	CGCG	1 cut(s)	288
BstHHI	GCGC	1 cut(s)	448
BstKTI	GATC	2 cut(s)	55, 278
BstMBI	GATC	2 cut(s)	52, 275
BstMCI	CGRYCG	1 cut(s)	278
BstMWI	GCNNNNNNNGC	5 cut(s)	112, 204, 473, 725, 897
BstNI	CCWGG	3 cut(s)	306, 317, 665
BstNSI	RCATGY	1 cut(s)	408
BstSCI	CCNGG	5 cut(s)	44, 304, 315, 606, 663
BstSLI	GKGCMC	1 cut(s)	469
BstUI	CGCG	1 cut(s)	288
BstV1I	GCAGC	3 cut(s)	25, 307, 797
BstV2I	GAAGAC	1 cut(s)	755
BtgZI	GCGATG	1 cut(s)	186
BtsCI	GGATG	5 cut(s)	207, 763, 845, 965, 1018
BtsI	GCAGTG	1 cut(s)	723
BtsIMutI	CAGTG	5 cut(s)	615, 699, 723, 893, 1056
Cac8I	GCNNGC	3 cut(s)	245, 792, 862
CfoI	GCGC	1 cut(s)	448
Cfr13I	GGNCC	1 cut(s)	592
CviAII	CATG	3 cut(s)	405, 461, 787
DdeI	CTNAG	4 cut(s)	34, 234, 269, 470
DpnI	GATC	2 cut(s)	54, 277
DpnII	GATC	2 cut(s)	52, 275
DraI	TTTAAA	1 cut(s)	256
Eam1104I	CTCTTC	1 cut(s)	1036
EarI	CTCTTC	1 cut(s)	1036
Eco47I	GGWCC	1 cut(s)	592
EcoRII	CCWGG	3 cut(s)	304, 315, 663
FaeI	CATG	3 cut(s)	408, 464, 790
FaiI	YATR	6 cut(s)	138, 395, 406, 462, 539, 788
FatI	CATG	3 cut(s)	404, 460, 786
FblI	GTMKAC	1 cut(s)	566
Fnu4HI	GCNGC	5 cut(s)	39, 42, 321, 409, 811
FokI	GGATG	5 cut(s)	194, 770, 852, 972, 1025
Fsp4HI	GCNGC	5 cut(s)	39, 42, 321, 409, 811
FspAI	RTGCGCAY	1 cut(s)	447
FspBI	CTAG	4 cut(s)	330, 344, 911, 1038
FspI	TGCGCA	1 cut(s)	447
GlaI	GCGC	1 cut(s)	447
GluI	GCNGC	5 cut(s)	39, 42, 321, 409, 811
GsuI	CTGGAG	1 cut(s)	876
HapII	CCGG	3 cut(s)	45, 525, 607
HhaI	GCGC	1 cut(s)	448
Hin1II	CATG	3 cut(s)	408, 464, 790
Hin6I	GCGC	1 cut(s)	446
HinP1I	GCGC	1 cut(s)	446
HindIII	AAGCTT	1 cut(s)	632
HinfI	GANTC	6 cut(s)	333, 612, 974, 980, 995, 1044
HpaII	CCGG	3 cut(s)	45, 525, 607
HphI	GGTGA	1 cut(s)	418
Hpy166II	GTNNAC	1 cut(s)	567
Hpy188I	TCNGA	5 cut(s)	235, 473, 778, 937, 979
Hpy188III	TCNNGA	4 cut(s)	163, 353, 452, 583
Hpy8I	GTNNAC	1 cut(s)	567
HpyAV	CCTTC	2 cut(s)	257, 449
HpyCH4III	ACNGT	4 cut(s)	122, 430, 680, 1002
HpyCH4V	TGCA	8 cut(s)	243, 323, 640, 728, 813, 872, 1016, 1027
HpyF10VI	GCNNNNNNNGC	5 cut(s)	112, 204, 473, 725, 897
HpyF3I	CTNAG	4 cut(s)	34, 234, 269, 470
Hsp92II	CATG	3 cut(s)	408, 464, 790
HspAI	GCGC	1 cut(s)	446
Kzo9I	GATC	2 cut(s)	52, 275
LmnI	GCTCC	3 cut(s)	103, 658, 857
Lsp1109I	GCAGC	3 cut(s)	25, 307, 797
LweI	GCATC	9 cut(s)	216, 432, 433, 457, 497, 537, 950, 1003, 1014
MaeI	CTAG	4 cut(s)	330, 344, 911, 1038
MaeIII	GTNAC	2 cut(s)	279, 850
MalI	GATC	2 cut(s)	54, 277
MboI	GATC	2 cut(s)	52, 275
MboII	GAAGA	4 cut(s)	62, 483, 755, 1053
MfeI	CAATTG	1 cut(s)	477
MhlI	GDGCHC	2 cut(s)	469, 663
MlyI	GAGTC	2 cut(s)	983, 1053
MmeI	TCCRAC	1 cut(s)	957
MroXI	GAANNNNTTC	2 cut(s)	130, 158
MseI	TTAA	5 cut(s)	63, 255, 369, 917, 927
MslI	CAYNNNNRTG	1 cut(s)	1061
MspCI	CTTAAG	2 cut(s)	368, 916
MspI	CCGG	3 cut(s)	45, 525, 607
MspR9I	CCNGG	5 cut(s)	46, 306, 317, 608, 665
MunI	CAATTG	1 cut(s)	477
Mva1269I	GAATGC	1 cut(s)	864
MvaI	CCWGG	3 cut(s)	306, 317, 665
MvnI	CGCG	1 cut(s)	288
MwoI	GCNNNNNNNGC	5 cut(s)	112, 204, 473, 725, 897
NciI	CCSGG	2 cut(s)	46, 608
NdeII	GATC	2 cut(s)	52, 275
NlaIII	CATG	3 cut(s)	408, 464, 790
NlaIV	GGNNCC	1 cut(s)	466
NmuCI	GTSAC	1 cut(s)	279
NsbI	TGCGCA	1 cut(s)	447
NspI	RCATGY	1 cut(s)	408
PctI	GAATGC	1 cut(s)	864
PdmI	GAANNNNTTC	2 cut(s)	130, 158
PfeI	GAWTC	4 cut(s)	333, 612, 980, 995
PkrI	GCNGC	5 cut(s)	40, 43, 322, 410, 812
Ple19I	CGATCG	1 cut(s)	278
PleI	GAGTC	2 cut(s)	982, 1052
PpsI	GAGTC	2 cut(s)	982, 1052
Psp6I	CCWGG	3 cut(s)	304, 315, 663
PspGI	CCWGG	3 cut(s)	304, 315, 663
PspN4I	GGNNCC	1 cut(s)	466
PspPI	GGNCC	1 cut(s)	592
PvuI	CGATCG	1 cut(s)	278
RseI	CAYNNNNRTG	1 cut(s)	1061
SaqAI	TTAA	5 cut(s)	63, 255, 369, 917, 927
SatI	GCNGC	5 cut(s)	39, 42, 321, 409, 811
Sau3AI	GATC	2 cut(s)	52, 275
Sau96I	GGNCC	1 cut(s)	592
SchI	GAGTC	2 cut(s)	983, 1053
ScrFI	CCNGG	5 cut(s)	46, 306, 317, 608, 665
SduI	GDGCHC	2 cut(s)	469, 663
SfaNI	GCATC	9 cut(s)	216, 432, 433, 457, 497, 537, 950, 1003, 1014
SinI	GGWCC	1 cut(s)	592
SmiMI	CAYNNNNRTG	1 cut(s)	1061
SmlI	CTYRAG	5 cut(s)	13, 368, 581, 740, 916
SmoI	CTYRAG	5 cut(s)	13, 368, 581, 740, 916
SsiI	CCGC	3 cut(s)	42, 90, 409
SspI	AATATT	1 cut(s)	360
SspMI	CTAG	4 cut(s)	330, 344, 911, 1038
StyD4I	CCNGG	5 cut(s)	44, 304, 315, 606, 663
TaaI	ACNGT	4 cut(s)	122, 430, 680, 1002
TaqI	TCGA	2 cut(s)	381, 387
TaqII	GACCGA	1 cut(s)	315
TauI	GCSGC	2 cut(s)	44, 411
TfiI	GAWTC	4 cut(s)	333, 612, 980, 995
Tru1I	TTAA	5 cut(s)	63, 255, 369, 917, 927
Tru9I	TTAA	5 cut(s)	63, 255, 369, 917, 927
TscAI	CASTG	5 cut(s)	622, 706, 730, 893, 1063
TseFI	GTSAC	1 cut(s)	279
TseI	GCWGC	3 cut(s)	38, 320, 810
Tsp45I	GTSAC	1 cut(s)	279
TspDTI	ATGAA	3 cut(s)	17, 72, 338
TspGWI	ACGGA	1 cut(s)	389
TspRI	CASTG	5 cut(s)	622, 706, 730, 893, 1063
Vha464I	CTTAAG	2 cut(s)	368, 916
VpaK11BI	GGWCC	1 cut(s)	592
XapI	RAATTY	2 cut(s)	156, 1052
XceI	RCATGY	1 cut(s)	408
XmiI	GTMKAC	1 cut(s)	566
XmnI	GAANNNNTTC	2 cut(s)	130, 158
XspI	CTAG	4 cut(s)	330, 344, 911, 1038

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.