Rh2DG393800

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0001041
Physical Location & Seq
Reverse (-)
57173201 .. 57174289
1089 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG393800.1

Sequence Viewer

Length: 801 bp
ATGGGTGTACACACCAAAAAGAAATCTGGGATATTTTCATCGTTGAGCAACGATTTACTTGGCCTAGTCATTAACAAGGTTAAGGACAAAGAAGATAGAAACTCGTTACCTCGGAACTGCAAGAAATGGTTTAAATTGGAAGGTCTAGACCGGTCATCACTTTCCCTTGATGTTAACAAGCCCGGATTTTCCCTTCCTGCACTAAATAGATTCCCCAATATAGTCAATTTGACATTATGGGATTTCAAGACCCACACCGACCTCAAATTCATAGCCAAAGCATGTCCTAAAATCGAGAGCATCATGATTGAATGCAGAGATGAGAAGCCAAAAGGTGATGGTTGTATTTTAAGCCAAAAAGGTCTTTGTGCTTTGGGAGATGGGTGTCCCAAATTGTCCGAAGTTGAGATTATTGGGCCAAACGCAACAGCGGATTCTAGAGTTGATGAGCTTTTACATTCAGCACATAACTTGGAGCCCCTGGTTTTGCTAAAGAATAGCTTGATATCGGGTGAAGCCCTCAGAGCAATTGGGTTCACATCTTCCATTAGCATTTTAGAGTTAATACATTGTTATAACATTACCGATGAGGGATTGGCTTTTTCAGTGAATGGATCTACCTCAAAAACCCTTAAGAAATTCGTCCTTTATACTTGTTGTAAAATCACTAATACTGGGGTCGAGCTTTTGGGCAAAATGTGTAGCTTGGAGCACCTGGAATTGTCCTCTGGGGGAGATATAGTCAAATCACTGATATTGGAGGTGTGGCAATCTCTGCAATTCGAACCCTCAAGGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

266

Amino Acids

29.25

Weight (kDa)

7.99

Isoelectric Point (pI)

36.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box_5 PF18511 14 - 52 7.4e-06 F-box
DUF7885 PF25372 121 - 247 8.3e-07 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 576
AciI CCGC 1 cut(s) 431
AclWI GGATC 1 cut(s) 622
AcsI RAATTY 2 cut(s) 266, 638
AfaI GTAC 1 cut(s) 9
AflII CTTAAG 1 cut(s) 632
AgeI ACCGGT 1 cut(s) 150
AgsI TTSAA 2 cut(s) 247, 311
AjnI CCWGG 2 cut(s) 480, 714
AluBI AGCT 4 cut(s) 451, 501, 685, 705
AluI AGCT 4 cut(s) 451, 501, 685, 705
Alw21I GWGCWC 1 cut(s) 714
AlwI GGATC 1 cut(s) 622
AoxI GGCC 2 cut(s) 61, 416
ApoI RAATTY 2 cut(s) 266, 638
AsiGI ACCGGT 1 cut(s) 150
AspS9I GGNCC 1 cut(s) 416
AsuC2I CCSGG 1 cut(s) 183
AsuHPI GGTGA 2 cut(s) 347, 524
AsuII TTCGAA 1 cut(s) 783
BanII GRGCYC 1 cut(s) 480
Bbv12I GWGCWC 1 cut(s) 714
BccI CCATC 2 cut(s) 332, 374
BciT130I CCWGG 2 cut(s) 482, 716
BcnI CCSGG 1 cut(s) 183
BfaI CTAG 3 cut(s) 65, 146, 438
BfrI CTTAAG 1 cut(s) 632
Bme1390I CCNGG 3 cut(s) 183, 482, 716
BmgT120I GGNCC 1 cut(s) 416
BmiI GGNNCC 1 cut(s) 477
BmrFI CCNGG 3 cut(s) 183, 482, 716
BmrI ACTGGG 1 cut(s) 684
BmsI GCATC 1 cut(s) 309
BmuI ACTGGG 1 cut(s) 684
Bpu14I TTCGAA 1 cut(s) 783
BpuEI CTTGAG 1 cut(s) 775
BpuMI CCSGG 1 cut(s) 183
BsaJI CCNNGG 2 cut(s) 110, 480
BsaWI WCCGGW 1 cut(s) 150
BsaXI ACNNNNNCTCC 2 cut(s) 726, 756
Bse118I RCCGGY 1 cut(s) 150
Bse1I ACTGG 1 cut(s) 679
BseBI CCWGG 2 cut(s) 482, 716
BseDI CCNNGG 2 cut(s) 110, 480
BseMII CTCAG 1 cut(s) 535
BseNI ACTGG 1 cut(s) 679
BsgI GTGCAG 1 cut(s) 183
BshFI GGCC 2 cut(s) 63, 418
BshTI ACCGGT 1 cut(s) 150
BsiHKAI GWGCWC 1 cut(s) 714
BsiSI CCGG 2 cut(s) 151, 183
BslFI GGGAC 1 cut(s) 372
BsmFI GGGAC 1 cut(s) 372
BsmI GAATGC 1 cut(s) 317
BsnI GGCC 2 cut(s) 63, 418
Bsp119I TTCGAA 1 cut(s) 783
Bsp1286I GDGCHC 2 cut(s) 480, 714
Bsp1407I TGTACA 1 cut(s) 7
Bsp143I GATC 1 cut(s) 614
BspACI CCGC 1 cut(s) 431
BspANI GGCC 2 cut(s) 63, 418
BspCNI CTCAG 1 cut(s) 534
BspHI TCATGA 1 cut(s) 303
BspLI GGNNCC 1 cut(s) 477
BspPI GGATC 1 cut(s) 622
BspT104I TTCGAA 1 cut(s) 783
BspTI CTTAAG 1 cut(s) 632
BsrFI RCCGGY 1 cut(s) 150
BsrGI TGTACA 1 cut(s) 7
BsrI ACTGG 1 cut(s) 679
BssAI RCCGGY 1 cut(s) 150
BssECI CCNNGG 2 cut(s) 110, 480
BssMI GATC 1 cut(s) 614
Bst2UI CCWGG 2 cut(s) 482, 716
BstAFI CTTAAG 1 cut(s) 632
BstAPI GCANNNNNTGC 1 cut(s) 775
BstAUI TGTACA 1 cut(s) 7
BstBI TTCGAA 1 cut(s) 783
BstDEI CTNAG 1 cut(s) 521
BstKTI GATC 1 cut(s) 617
BstMBI GATC 1 cut(s) 614
BstMWI GCNNNNNNNGC 2 cut(s) 524, 775
BstNI CCWGG 2 cut(s) 482, 716
BstNSI RCATGY 1 cut(s) 285
BstSCI CCNGG 3 cut(s) 181, 480, 714
BstX2I RGATCY 1 cut(s) 614
BstYI RGATCY 1 cut(s) 614
BsuRI GGCC 2 cut(s) 63, 418
BtsIMutI CAGTG 2 cut(s) 612, 749
CciI TCATGA 1 cut(s) 303
Cfr10I RCCGGY 1 cut(s) 150
Cfr13I GGNCC 1 cut(s) 416
Csp6I GTAC 1 cut(s) 8
CspAI ACCGGT 1 cut(s) 150
CviAII CATG 2 cut(s) 282, 304
CviQI GTAC 1 cut(s) 8
DdeI CTNAG 1 cut(s) 521
DpnI GATC 1 cut(s) 616
DpnII GATC 1 cut(s) 614
DraI TTTAAA 1 cut(s) 133
Eco24I GRGCYC 1 cut(s) 480
Eco32I GATATC 1 cut(s) 507
EcoRII CCWGG 2 cut(s) 480, 714
EcoRV GATATC 1 cut(s) 507
EcoT38I GRGCYC 1 cut(s) 480
FaeI CATG 2 cut(s) 285, 307
FaiI YATR 9 cut(s) 221, 238, 272, 283, 305, 468, 576, 651, 740
FalI AAGNNNNNCTT 2 cut(s) 485, 517
FaqI GGGAC 1 cut(s) 372
FatI CATG 2 cut(s) 281, 303
FriOI GRGCYC 1 cut(s) 480
FspBI CTAG 3 cut(s) 65, 146, 438
HaeIII GGCC 2 cut(s) 63, 418
HapII CCGG 2 cut(s) 151, 183
Hin1II CATG 2 cut(s) 285, 307
HincII GTYRAC 1 cut(s) 175
HindII GTYRAC 1 cut(s) 175
HinfI GANTC 2 cut(s) 210, 434
HpaI GTTAAC 1 cut(s) 175
HpaII CCGG 2 cut(s) 151, 183
HphI GGTGA 2 cut(s) 347, 524
Hpy166II GTNNAC 4 cut(s) 8, 10, 175, 537
Hpy188I TCNGA 3 cut(s) 114, 400, 524
Hpy188III TCNNGA 5 cut(s) 146, 247, 295, 304, 438
Hpy8I GTNNAC 4 cut(s) 8, 10, 175, 537
HpyAV CCTTC 2 cut(s) 134, 203
HpyCH4V TGCA 4 cut(s) 120, 200, 315, 778
HpyF10VI GCNNNNNNNGC 2 cut(s) 524, 775
HpyF3I CTNAG 1 cut(s) 521
Hsp92II CATG 2 cut(s) 285, 307
KspAI GTTAAC 1 cut(s) 175
Kzo9I GATC 1 cut(s) 614
LmnI GCTCC 2 cut(s) 475, 709
LweI GCATC 1 cut(s) 309
MaeI CTAG 3 cut(s) 65, 146, 438
MaeIII GTNAC 1 cut(s) 105
MalI GATC 1 cut(s) 616
MboI GATC 1 cut(s) 614
MboII GAAGA 2 cut(s) 104, 534
MfeI CAATTG 1 cut(s) 528
MflI RGATCY 1 cut(s) 614
MhlI GDGCHC 2 cut(s) 480, 714
MluCI AATT 9 cut(s) 134, 226, 266, 392, 528, 638, 719, 779, 796
MnlI CCTC 8 cut(s) 120, 272, 530, 583, 631, 736, 754, 799
MseI TTAA 7 cut(s) 72, 81, 132, 174, 350, 563, 633
MspA1I CMGCKG 1 cut(s) 431
MspCI CTTAAG 1 cut(s) 632
MspI CCGG 2 cut(s) 151, 183
MspR9I CCNGG 3 cut(s) 183, 482, 716
MunI CAATTG 1 cut(s) 528
Mva1269I GAATGC 1 cut(s) 317
MvaI CCWGG 2 cut(s) 482, 716
MwoI GCNNNNNNNGC 2 cut(s) 524, 775
NciI CCSGG 1 cut(s) 183
NdeII GATC 1 cut(s) 614
NlaIII CATG 2 cut(s) 285, 307
NlaIV GGNNCC 1 cut(s) 477
NspI RCATGY 1 cut(s) 285
NspV TTCGAA 1 cut(s) 783
PagI TCATGA 1 cut(s) 303
PctI GAATGC 1 cut(s) 317
PfeI GAWTC 2 cut(s) 210, 434
PinAI ACCGGT 1 cut(s) 150
PsiI TTATAA 1 cut(s) 576
Psp6I CCWGG 2 cut(s) 480, 714
PspGI CCWGG 2 cut(s) 480, 714
PspN4I GGNNCC 1 cut(s) 477
PspPI GGNCC 1 cut(s) 416
PsuI RGATCY 1 cut(s) 614
RsaI GTAC 1 cut(s) 9
RsaNI GTAC 1 cut(s) 8
SaqAI TTAA 7 cut(s) 72, 81, 132, 174, 350, 563, 633
Sau3AI GATC 1 cut(s) 614
Sau96I GGNCC 1 cut(s) 416
ScrFI CCNGG 3 cut(s) 183, 482, 716
SduI GDGCHC 2 cut(s) 480, 714
SfaNI GCATC 1 cut(s) 309
SfuI TTCGAA 1 cut(s) 783
SmlI CTYRAG 2 cut(s) 632, 790
SmoI CTYRAG 2 cut(s) 632, 790
Sse9I AATT 9 cut(s) 134, 226, 266, 392, 528, 638, 719, 779, 796
SsiI CCGC 1 cut(s) 431
SspMI CTAG 3 cut(s) 65, 146, 438
StyD4I CCNGG 3 cut(s) 181, 480, 714
TaqI TCGA 3 cut(s) 294, 681, 783
TasI AATT 9 cut(s) 134, 226, 266, 392, 528, 638, 719, 779, 796
TatI WGTACW 1 cut(s) 7
TfiI GAWTC 2 cut(s) 210, 434
Tru1I TTAA 7 cut(s) 72, 81, 132, 174, 350, 563, 633
Tru9I TTAA 7 cut(s) 72, 81, 132, 174, 350, 563, 633
TscAI CASTG 2 cut(s) 612, 756
TspDTI ATGAA 2 cut(s) 27, 259
TspRI CASTG 2 cut(s) 612, 756
Vha464I CTTAAG 1 cut(s) 632
XapI RAATTY 2 cut(s) 266, 638
XbaI TCTAGA 2 cut(s) 145, 437
XceI RCATGY 1 cut(s) 285
XspI CTAG 3 cut(s) 65, 146, 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.