Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004670.1

Orthogroup ID

OG0001041

Physical Location & Seq

Genomic Coordinates Reverse (-)

52853 .. 54009

Gene Structure 1157 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004670.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

atgggtgtacacaccaaaaagaaatctgggatattttcatcgttgagcgacgatttacttggcctagtcattaacaaggttaaggacaaagaagatagaaactcgttacctcggaactgcaagcaatggtttaaattggaaggtctagaccggtcatcactttcccttgatgttaacaagcccggattttcccttcctgcactaactagattccccaatatagtcaatttgacattatgggatttcaagacccacaccgacctcgaattcatagccaaagcatgtcctaaaatcgagagcatcatgattgaatgcagagatgagaagccaaaaggtgatggttgtattttaagccgaaaaggtctctgtgctttgggggatgggtgtcccaaattgtccgaagttgagattattgggccaaacgcaacaggggattctagagttgatgagcttttacattcagcacataacttggagcccctggttttgctaaagaatagcttgatatcgggtgaagccctcagagcaattgggttcacatcttccattagcattttagagttaatacattgttataacattaccgatgagggattggctttttcacttggagcacctggaattgtcctctgggggagatatagtcaaatcactgatattggaggtgtggcaatctctacaattcgaaccctcaaggaattgagattgaatcatctaaacgtgtcagaccctaccatagtcgctcttgcacagaattgccgcaacttggaaattcttgatatagggggttctgaaagggtaactagagctggcatttgtgcattttgcagtcataagtgcttgaaatgccttgaattgcacgagttaaatatcaatctttttgatgtggaatggatagtgcttggatgcccttcattggattctattgtcgtggattcacataggaggcttgatctaacttggagcgatcaattgatgcatgacaaaactaaaagagttgttaagtatgttgtaagttatgctcttgatatgtattttcaggacttttatgttctatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_6

Protein Analysis

352

Amino Acids

39.14

Weight (kDa)

6.22

Isoelectric Point (pI)

40.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001041)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40700 FvH4_5g10370 FvH4_5g12160 FvH4_5g12180 FvH4_5g12190 FvH4_5g12200 FvH4_5g12210 FvH4_5g12211
rosa_chinensis	RchiOBHm_Chr5g0073461 RchiOBHm_Chr5g0073471 RchiOBHm_Chr7g0185341 RchiOBHm_Chr7g0185381 RchiOBHm_Chr7g0185401
rosa_laevigata	RLG00000004916 RLG00000004917 RLG00000004921 RLG00000019401 RLG00000036387
rosa_multiflora	Rmu_co8366929.1_g000001 Rmu_co8392105.1_g000001 Rmu_sc0001761.1_g000011 Rmu_sc0001761.1_g000012 Rmu_sc0001761.1_g000013 Rmu_sc0001761.1_g000016 Rmu_sc0004670.1_g000010 Rmu_sc0008496.1_g000005 Rmu_sc0023242.1_g000005 Rmu_sc0023242.1_g000006 Rmu_ssc0000226.1_g000026 Rmu_ssc0000226.1_g000027
rosa_roxburghii	Rroxscaffold_1G00007790 Rroxscaffold_1G00017220 Rroxscaffold_2G00110040 Rroxscaffold_3G00269000 Rroxscaffold_3G00269010
rosa_rugosa	Rorug05G0423700 Rorug06G0468100 Rorug06G0468700
rosa_samantha	Rh2CG354600 Rh2CG354700 Rh2DG393800 Rh5AG481000 Rh5CG455400 Rh5CG524900 Rh5DG514100 Rh7AG074000 Rh7AG074100 Rh7AG074200 Rh7AG074600 Rh7BG072600 Rh7BG073200 Rh7BG073300 Rh7BG073400 Rh7DG073200 Rh7DG073600 Rh7DG073700 Rh7DG073800
rosa_wichuraiana	Rw2G030200 Rw7G006080 Rw7G006120 Rw7G006130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	576
AciI	CCGC	1 cut(s)	760
AcsI	RAATTY	2 cut(s)	266, 771
AfaI	GTAC	1 cut(s)	9
AfiI	CCNNNNNNNGG	2 cut(s)	766, 916
AflIII	ACRYGT	1 cut(s)	720
AgeI	ACCGGT	1 cut(s)	150
AgsI	TTSAA	5 cut(s)	247, 311, 709, 844, 854
AjnI	CCWGG	2 cut(s)	480, 616
AluBI	AGCT	3 cut(s)	451, 501, 809
AluI	AGCT	3 cut(s)	451, 501, 809
Alw21I	GWGCWC	1 cut(s)	616
Alw26I	GTCTC	1 cut(s)	368
AoxI	GGCC	2 cut(s)	61, 416
ApoI	RAATTY	2 cut(s)	266, 771
AsiGI	ACCGGT	1 cut(s)	150
AspS9I	GGNCC	1 cut(s)	416
AsuC2I	CCSGG	1 cut(s)	183
AsuHPI	GGTGA	2 cut(s)	347, 524
AsuII	TTCGAA	1 cut(s)	685
BanII	GRGCYC	1 cut(s)	480
BauI	CACGAG	1 cut(s)	860
Bbv12I	GWGCWC	1 cut(s)	616
BccI	CCATC	2 cut(s)	332, 374
BciT130I	CCWGG	2 cut(s)	482, 618
BcnI	CCSGG	1 cut(s)	183
BcoDI	GTCTC	1 cut(s)	368
BfaI	CTAG	5 cut(s)	65, 146, 207, 438, 804
BisI	GCNGC	1 cut(s)	760
BlsI	GCNGC	1 cut(s)	761
Bme1390I	CCNGG	3 cut(s)	183, 482, 618
BmgT120I	GGNCC	1 cut(s)	416
BmiI	GGNNCC	1 cut(s)	477
BmrFI	CCNGG	3 cut(s)	183, 482, 618
BmsI	GCATC	3 cut(s)	309, 896, 966
Bpu14I	TTCGAA	1 cut(s)	685
BpuEI	CTTGAG	1 cut(s)	677
BpuMI	CCSGG	1 cut(s)	183
BsaI	GGTCTC	1 cut(s)	368
BsaJI	CCNNGG	2 cut(s)	110, 480
BsaWI	WCCGGW	1 cut(s)	150
BsaXI	ACNNNNNCTCC	2 cut(s)	628, 658
Bsc4I	CCNNNNNNNGG	2 cut(s)	766, 916
Bse118I	RCCGGY	1 cut(s)	150
Bse3DI	GCAATG	1 cut(s)	131
BseBI	CCWGG	2 cut(s)	482, 618
BseDI	CCNNGG	2 cut(s)	110, 480
BseGI	GGATG	2 cut(s)	385, 911
BseLI	CCNNNNNNNGG	2 cut(s)	766, 916
BseMI	GCAATG	1 cut(s)	131
BseMII	CTCAG	1 cut(s)	535
BsgI	GTGCAG	1 cut(s)	183
BshFI	GGCC	2 cut(s)	63, 418
BshTI	ACCGGT	1 cut(s)	150
BsiHKAI	GWGCWC	1 cut(s)	616
BsiSI	CCGG	2 cut(s)	151, 183
BslFI	GGGAC	1 cut(s)	372
BslI	CCNNNNNNNGG	2 cut(s)	766, 916
BsmAI	GTCTC	1 cut(s)	368
BsmFI	GGGAC	1 cut(s)	372
BsmI	GAATGC	1 cut(s)	317
BsnI	GGCC	2 cut(s)	63, 418
Bso31I	GGTCTC	1 cut(s)	368
Bsp119I	TTCGAA	1 cut(s)	685
Bsp1286I	GDGCHC	2 cut(s)	480, 616
Bsp1407I	TGTACA	1 cut(s)	7
Bsp143I	GATC	2 cut(s)	952, 967
BspACI	CCGC	1 cut(s)	760
BspANI	GGCC	2 cut(s)	63, 418
BspCNI	CTCAG	1 cut(s)	534
BspHI	TCATGA	1 cut(s)	303
BspLI	GGNNCC	1 cut(s)	477
BspT104I	TTCGAA	1 cut(s)	685
BspTNI	GGTCTC	1 cut(s)	368
BsrDI	GCAATG	1 cut(s)	131
BsrFI	RCCGGY	1 cut(s)	150
BsrGI	TGTACA	1 cut(s)	7
BssAI	RCCGGY	1 cut(s)	150
BssECI	CCNNGG	2 cut(s)	110, 480
BssMI	GATC	2 cut(s)	952, 967
BssSI	CACGAG	1 cut(s)	860
Bst2BI	CACGAG	1 cut(s)	860
Bst2UI	CCWGG	2 cut(s)	482, 618
BstAUI	TGTACA	1 cut(s)	7
BstBI	TTCGAA	1 cut(s)	685
BstC8I	GCNNGC	2 cut(s)	122, 811
BstDEI	CTNAG	1 cut(s)	521
BstF5I	GGATG	2 cut(s)	385, 911
BstKTI	GATC	2 cut(s)	955, 970
BstMAI	GTCTC	1 cut(s)	368
BstMBI	GATC	2 cut(s)	952, 967
BstMWI	GCNNNNNNNGC	2 cut(s)	524, 846
BstNI	CCWGG	2 cut(s)	482, 618
BstNSI	RCATGY	1 cut(s)	285
BstSCI	CCNGG	3 cut(s)	181, 480, 616
BsuRI	GGCC	2 cut(s)	63, 418
BtsCI	GGATG	2 cut(s)	385, 911
BtsIMutI	CAGTG	1 cut(s)	651
Cac8I	GCNNGC	2 cut(s)	122, 811
CciI	TCATGA	1 cut(s)	303
Cfr10I	RCCGGY	1 cut(s)	150
Cfr13I	GGNCC	1 cut(s)	416
Csp6I	GTAC	1 cut(s)	8
CspAI	ACCGGT	1 cut(s)	150
CviAII	CATG	3 cut(s)	282, 304, 980
CviQI	GTAC	1 cut(s)	8
DdeI	CTNAG	1 cut(s)	521
DpnI	GATC	2 cut(s)	954, 969
DpnII	GATC	2 cut(s)	952, 967
DraI	TTTAAA	1 cut(s)	133
Eco24I	GRGCYC	1 cut(s)	480
Eco31I	GGTCTC	1 cut(s)	368
Eco32I	GATATC	1 cut(s)	507
EcoRI	GAATTC	1 cut(s)	266
EcoRII	CCWGG	2 cut(s)	480, 616
EcoRV	GATATC	1 cut(s)	507
EcoT22I	ATGCAT	1 cut(s)	981
EcoT38I	GRGCYC	1 cut(s)	480
FaeI	CATG	3 cut(s)	285, 307, 983
FalI	AAGNNNNNCTT	2 cut(s)	485, 517
FaqI	GGGAC	1 cut(s)	372
FatI	CATG	3 cut(s)	281, 303, 979
Fnu4HI	GCNGC	1 cut(s)	760
FokI	GGATG	2 cut(s)	392, 918
FriOI	GRGCYC	1 cut(s)	480
Fsp4HI	GCNGC	1 cut(s)	760
FspBI	CTAG	5 cut(s)	65, 146, 207, 438, 804
GluI	GCNGC	1 cut(s)	760
HaeIII	GGCC	2 cut(s)	63, 418
HapII	CCGG	2 cut(s)	151, 183
Hin1II	CATG	3 cut(s)	285, 307, 983
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HinfI	GANTC	5 cut(s)	210, 434, 709, 920, 935
HpaI	GTTAAC	1 cut(s)	175
HpaII	CCGG	2 cut(s)	151, 183
HphI	GGTGA	2 cut(s)	347, 524
Hpy166II	GTNNAC	4 cut(s)	8, 10, 175, 537
Hpy188I	TCNGA	5 cut(s)	114, 400, 524, 727, 793
Hpy188III	TCNNGA	8 cut(s)	146, 247, 295, 304, 438, 776, 1025, 1040
Hpy8I	GTNNAC	4 cut(s)	8, 10, 175, 537
Hpy99I	CGWCG	1 cut(s)	53
HpyAV	CCTTC	3 cut(s)	134, 203, 921
HpyCH4IV	ACGT	1 cut(s)	720
HpyCH4V	TGCA	8 cut(s)	120, 200, 315, 749, 821, 828, 859, 979
HpyF10VI	GCNNNNNNNGC	2 cut(s)	524, 846
HpyF3I	CTNAG	1 cut(s)	521
HpySE526I	ACGT	1 cut(s)	720
Hsp92II	CATG	3 cut(s)	285, 307, 983
KspAI	GTTAAC	1 cut(s)	175
Kzo9I	GATC	2 cut(s)	952, 967
LmnI	GCTCC	3 cut(s)	475, 611, 963
LweI	GCATC	3 cut(s)	309, 896, 966
MaeI	CTAG	5 cut(s)	65, 146, 207, 438, 804
MaeII	ACGT	1 cut(s)	720
MaeIII	GTNAC	2 cut(s)	105, 799
MalI	GATC	2 cut(s)	954, 969
MboI	GATC	2 cut(s)	952, 967
MboII	GAAGA	2 cut(s)	104, 534
MfeI	CAATTG	2 cut(s)	528, 971
MhlI	GDGCHC	2 cut(s)	480, 616
MnlI	CCTC	8 cut(s)	120, 272, 530, 583, 638, 656, 701, 939
Mph1103I	ATGCAT	1 cut(s)	981
MseI	TTAA	8 cut(s)	72, 81, 132, 174, 350, 563, 866, 1002
MspI	CCGG	2 cut(s)	151, 183
MspR9I	CCNGG	3 cut(s)	183, 482, 618
MunI	CAATTG	2 cut(s)	528, 971
Mva1269I	GAATGC	1 cut(s)	317
MvaI	CCWGG	2 cut(s)	482, 618
MwoI	GCNNNNNNNGC	2 cut(s)	524, 846
NciI	CCSGG	1 cut(s)	183
NdeII	GATC	2 cut(s)	952, 967
NlaIII	CATG	3 cut(s)	285, 307, 983
NlaIV	GGNNCC	1 cut(s)	477
NsiI	ATGCAT	1 cut(s)	981
NspI	RCATGY	1 cut(s)	285
NspV	TTCGAA	1 cut(s)	685
PagI	TCATGA	1 cut(s)	303
PctI	GAATGC	1 cut(s)	317
PfeI	GAWTC	5 cut(s)	210, 434, 709, 920, 935
PinAI	ACCGGT	1 cut(s)	150
PkrI	GCNGC	1 cut(s)	761
PsiI	TTATAA	1 cut(s)	576
Psp6I	CCWGG	2 cut(s)	480, 616
PspGI	CCWGG	2 cut(s)	480, 616
PspN4I	GGNNCC	1 cut(s)	477
PspPI	GGNCC	1 cut(s)	416
RsaI	GTAC	1 cut(s)	9
RsaNI	GTAC	1 cut(s)	8
SaqAI	TTAA	8 cut(s)	72, 81, 132, 174, 350, 563, 866, 1002
SatI	GCNGC	1 cut(s)	760
Sau3AI	GATC	2 cut(s)	952, 967
Sau96I	GGNCC	1 cut(s)	416
ScrFI	CCNGG	3 cut(s)	183, 482, 618
SduI	GDGCHC	2 cut(s)	480, 616
SfaNI	GCATC	3 cut(s)	309, 896, 966
SfuI	TTCGAA	1 cut(s)	685
SmlI	CTYRAG	1 cut(s)	692
SmoI	CTYRAG	1 cut(s)	692
SsiI	CCGC	1 cut(s)	760
SspMI	CTAG	5 cut(s)	65, 146, 207, 438, 804
StyD4I	CCNGG	3 cut(s)	181, 480, 616
TaiI	ACGT	1 cut(s)	723
TaqI	TCGA	3 cut(s)	264, 294, 685
TatI	WGTACW	1 cut(s)	7
TauI	GCSGC	1 cut(s)	762
TfiI	GAWTC	5 cut(s)	210, 434, 709, 920, 935
Tru1I	TTAA	8 cut(s)	72, 81, 132, 174, 350, 563, 866, 1002
Tru9I	TTAA	8 cut(s)	72, 81, 132, 174, 350, 563, 866, 1002
TscAI	CASTG	1 cut(s)	658
TspDTI	ATGAA	3 cut(s)	27, 259, 903
TspRI	CASTG	1 cut(s)	658
XapI	RAATTY	2 cut(s)	266, 771
XbaI	TCTAGA	2 cut(s)	145, 437
XceI	RCATGY	1 cut(s)	285
XspI	CTAG	5 cut(s)	65, 146, 207, 438, 804
Zsp2I	ATGCAT	1 cut(s)	981

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.