RLG00000036387

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001041
Physical Location & Seq
Reverse (-)
79882314 .. 79883487
1174 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036387

Sequence Viewer

Length: 930 bp
ATGTCATTTCTGGACGACGATGTAGTTGGCCCAATTGCTAACAAGGTTTGTGAGAAAGATGATAGAAAGTCCTTCTCCGAGGTCTGCAAGCAATGGTGTAGAGTAGAACGTCTAAGCCGATCATCACTCAAGGTTTTCCATAACTGGCCCGGTTTGCCCCTTGGTGCACTAACTAGATTCCCAAATGTAGTCCATTTGGAAGTGAAGTATGTTAGGGCTGAGGCCGACCTTGAATTCATAGCCCAAACTTGTCCTAGACTCGAGAGCATTACGGTCCACTCCGATATCCGAATAGAGAGTGATGATATTGTTTTGGGGCCAAAAACACGTAACTTGAAGGCTCTGGTTTTGGCCTGTGATTTGTGGATCTCAGATGAAGCATTGAGAGCCATTGGGTACGCATCTTCCATTAGCACGTCGAAGTTGCCAGGGTCTGGCATTAAGGATGTGGAATTGGCTGTTTTAGCAAATGGGACATCTTCCATTAGCACTTTGGAGTTGCAAGATTTGTCTAACTGTGGGAGTAGAATCACTAATGCTGGAGGTGTGTCAATCTCTGGAATTCAAACCCTCAGGGAATTGCTATTGGTTAATCTTCAGACCGTAAAAAACAGTACCATGGTTGCTCTTGCATGGGACTGCCCCCACTCGGAAATACTTGATTTACGGGGCTGTAAAGCTGTAACAGGAGCTGGCATTCATGCATTTTCAGGTCATAAGTGTTTGAAACGCCTTGTGTTGCTTAACTTACCCTTTCACAATTTTAATGAAGCTGATTTGGAAAGCATAGCCCTTAAATGCCCGTCGTTGGAGTCAGAATCTGTTCTGGTGGACAATGTGATTAAAGTGGTGCACGACAACACTCGAAGAGTCGTCAAGTTCATTAGTATATTCACGCCGTCCTTCAGATTGAATATTGAGCAGATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

310

Amino Acids

34.02

Weight (kDa)

6.45

Isoelectric Point (pI)

40.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box_5 PF18511 5 - 41 2.8e-06 F-box
DUF7885 PF25372 108 - 240 1.3e-07 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 434
AclWI GGATC 1 cut(s) 374
AcsI RAATTY 2 cut(s) 233, 561
AcuI CTGAAG 2 cut(s) 581, 889
AfaI GTAC 2 cut(s) 398, 616
AfiI CCNNNNNNNGG 3 cut(s) 434, 649, 808
AflIII ACRYGT 1 cut(s) 326
AgsI TTSAA 5 cut(s) 233, 337, 566, 727, 913
AjiI CACGTC 1 cut(s) 417
AjnI CCWGG 1 cut(s) 427
AluBI AGCT 3 cut(s) 680, 692, 773
AluI AGCT 3 cut(s) 680, 692, 773
Alw21I GWGCWC 2 cut(s) 169, 855
Alw44I GTGCAC 2 cut(s) 165, 851
AlwI GGATC 1 cut(s) 374
AlwNI CAGNNNCTG 3 cut(s) 434, 692, 821
Ama87I CYCGRG 1 cut(s) 260
AoxI GGCC 5 cut(s) 28, 146, 222, 317, 351
ApaLI GTGCAC 2 cut(s) 165, 851
ApoI RAATTY 2 cut(s) 233, 561
Asp700I GAANNNNTTC 1 cut(s) 822
AspS9I GGNCC 4 cut(s) 29, 147, 274, 317
AsuC2I CCSGG 1 cut(s) 150
AvaI CYCGRG 1 cut(s) 260
AvaII GGWCC 1 cut(s) 274
AxyI CCTNAGG 1 cut(s) 572
BaeGI GKGCMC 2 cut(s) 169, 855
Bbv12I GWGCWC 2 cut(s) 169, 855
BbvCI CCTCAGC 1 cut(s) 219
BceAI ACGGC 1 cut(s) 883
BciT130I CCWGG 1 cut(s) 429
BcnI CCSGG 1 cut(s) 150
BfaI CTAG 2 cut(s) 174, 255
Bme1390I CCNGG 2 cut(s) 150, 429
Bme18I GGWCC 1 cut(s) 274
BmeT110I CYCGRG 1 cut(s) 260
BmgBI CACGTC 1 cut(s) 417
BmgT120I GGNCC 4 cut(s) 29, 147, 274, 317
BmiI GGNNCC 1 cut(s) 318
BmrFI CCNGG 2 cut(s) 150, 429
BmsI GCATC 1 cut(s) 410
BpmI CTGGAG 1 cut(s) 561
Bpu10I CCTNAGC 1 cut(s) 219
BpuEI CTTGAG 1 cut(s) 113
BpuMI CCSGG 1 cut(s) 150
BsaAI YACGTR 1 cut(s) 329
BsaJI CCNNGG 4 cut(s) 78, 160, 428, 618
Bsc4I CCNNNNNNNGG 3 cut(s) 434, 649, 808
Bse1I ACTGG 1 cut(s) 149
Bse21I CCTNAGG 1 cut(s) 572
Bse3DI GCAATG 1 cut(s) 98
BseBI CCWGG 1 cut(s) 429
BseDI CCNNGG 4 cut(s) 78, 160, 428, 618
BseGI GGATG 1 cut(s) 451
BseLI CCNNNNNNNGG 3 cut(s) 434, 649, 808
BseMI GCAATG 1 cut(s) 98
BseMII CTCAG 3 cut(s) 210, 384, 586
BseNI ACTGG 1 cut(s) 149
BseSI GKGCMC 2 cut(s) 169, 855
BshFI GGCC 5 cut(s) 30, 148, 224, 319, 353
BsiHKAI GWGCWC 2 cut(s) 169, 855
BsiHKCI CYCGRG 1 cut(s) 260
BsiSI CCGG 1 cut(s) 150
BslFI GGGAC 2 cut(s) 487, 650
BslI CCNNNNNNNGG 3 cut(s) 434, 649, 808
BsmFI GGGAC 2 cut(s) 487, 650
BsmI GAATGC 1 cut(s) 696
BsnI GGCC 5 cut(s) 30, 148, 224, 319, 353
BsoBI CYCGRG 1 cut(s) 260
Bsp1286I GDGCHC 2 cut(s) 169, 855
Bsp143I GATC 2 cut(s) 119, 366
Bsp19I CCATGG 1 cut(s) 618
BspANI GGCC 5 cut(s) 30, 148, 224, 319, 353
BspCNI CTCAG 3 cut(s) 211, 383, 585
BspLI GGNNCC 1 cut(s) 318
BspPI GGATC 1 cut(s) 374
BsrDI GCAATG 1 cut(s) 98
BsrI ACTGG 1 cut(s) 149
BssECI CCNNGG 4 cut(s) 78, 160, 428, 618
BssMI GATC 2 cut(s) 119, 366
BssT1I CCWWGG 2 cut(s) 160, 618
Bst2UI CCWGG 1 cut(s) 429
Bst4CI ACNGT 4 cut(s) 274, 518, 604, 614
Bst6I CTCTTC 1 cut(s) 862
BstBAI YACGTR 1 cut(s) 329
BstC8I GCNNGC 2 cut(s) 89, 694
BstDEI CTNAG 4 cut(s) 113, 219, 370, 572
BstDSI CCRYGG 1 cut(s) 618
BstF5I GGATG 1 cut(s) 451
BstKTI GATC 2 cut(s) 122, 369
BstMBI GATC 2 cut(s) 119, 366
BstMWI GCNNNNNNNGC 3 cut(s) 154, 386, 464
BstNI CCWGG 1 cut(s) 429
BstSCI CCNGG 2 cut(s) 148, 427
BstSLI GKGCMC 2 cut(s) 169, 855
BstX2I RGATCY 1 cut(s) 366
BstYI RGATCY 1 cut(s) 366
Bsu36I CCTNAGG 1 cut(s) 572
BsuRI GGCC 5 cut(s) 30, 148, 224, 319, 353
BtgI CCRYGG 1 cut(s) 618
BtrI CACGTC 1 cut(s) 417
BtsCI GGATG 1 cut(s) 451
Cac8I GCNNGC 2 cut(s) 89, 694
CaiI CAGNNNCTG 3 cut(s) 434, 692, 821
Cfr13I GGNCC 4 cut(s) 29, 147, 274, 317
Csp6I GTAC 2 cut(s) 397, 615
CviAII CATG 3 cut(s) 619, 633, 701
CviQI GTAC 2 cut(s) 397, 615
DdeI CTNAG 4 cut(s) 113, 219, 370, 572
DpnI GATC 2 cut(s) 121, 368
DpnII GATC 2 cut(s) 119, 366
Eam1104I CTCTTC 1 cut(s) 862
EarI CTCTTC 1 cut(s) 862
Eco130I CCWWGG 2 cut(s) 160, 618
Eco32I GATATC 1 cut(s) 286
Eco47I GGWCC 1 cut(s) 274
Eco57I CTGAAG 2 cut(s) 581, 889
Eco81I CCTNAGG 1 cut(s) 572
Eco88I CYCGRG 1 cut(s) 260
EcoRI GAATTC 2 cut(s) 233, 561
EcoRII CCWGG 1 cut(s) 427
EcoRV GATATC 1 cut(s) 286
EcoT14I CCWWGG 2 cut(s) 160, 618
EcoT22I ATGCAT 1 cut(s) 706
ErhI CCWWGG 2 cut(s) 160, 618
FaeI CATG 3 cut(s) 622, 636, 704
FaiI YATR 9 cut(s) 141, 210, 239, 620, 634, 702, 717, 788, 890
FaqI GGGAC 2 cut(s) 487, 650
FatI CATG 3 cut(s) 618, 632, 700
FokI GGATG 1 cut(s) 458
FspBI CTAG 2 cut(s) 174, 255
GsuI CTGGAG 1 cut(s) 561
HaeIII GGCC 5 cut(s) 30, 148, 224, 319, 353
HapII CCGG 1 cut(s) 150
Hin1II CATG 3 cut(s) 622, 636, 704
HinfI GANTC 6 cut(s) 177, 258, 528, 812, 818, 870
HpaII CCGG 1 cut(s) 150
Hpy166II GTNNAC 4 cut(s) 167, 277, 832, 853
Hpy188I TCNGA 8 cut(s) 79, 283, 290, 373, 600, 652, 817, 908
Hpy188III TCNNGA 3 cut(s) 11, 262, 558
Hpy8I GTNNAC 4 cut(s) 167, 277, 832, 853
Hpy99I CGWCG 3 cut(s) 20, 421, 808
HpyAV CCTTC 3 cut(s) 82, 331, 913
HpyCH4III ACNGT 4 cut(s) 274, 518, 604, 614
HpyCH4IV ACGT 3 cut(s) 109, 328, 416
HpyCH4V TGCA 6 cut(s) 87, 167, 502, 632, 704, 853
HpyF10VI GCNNNNNNNGC 3 cut(s) 154, 386, 464
HpyF3I CTNAG 4 cut(s) 113, 219, 370, 572
HpySE526I ACGT 3 cut(s) 109, 328, 416
Hsp92II CATG 3 cut(s) 622, 636, 704
Kzo9I GATC 2 cut(s) 119, 366
LmnI GCTCC 1 cut(s) 689
LweI GCATC 1 cut(s) 410
MaeI CTAG 2 cut(s) 174, 255
MaeII ACGT 3 cut(s) 109, 328, 416
MaeIII GTNAC 2 cut(s) 329, 682
MalI GATC 2 cut(s) 121, 368
MboI GATC 2 cut(s) 119, 366
MboII GAAGA 4 cut(s) 396, 471, 587, 879
MfeI CAATTG 1 cut(s) 33
MflI RGATCY 1 cut(s) 366
MhlI GDGCHC 2 cut(s) 169, 855
MluCI AATT 6 cut(s) 33, 233, 452, 561, 578, 760
MlyI GAGTC 3 cut(s) 252, 821, 879
MmeI TCCRAC 1 cut(s) 789
MnlI CCTC 4 cut(s) 73, 214, 536, 581
Mph1103I ATGCAT 1 cut(s) 706
MroXI GAANNNNTTC 1 cut(s) 822
MseI TTAA 6 cut(s) 441, 591, 744, 765, 795, 843
MspI CCGG 1 cut(s) 150
MspR9I CCNGG 2 cut(s) 150, 429
MunI CAATTG 1 cut(s) 33
Mva1269I GAATGC 1 cut(s) 696
MvaI CCWGG 1 cut(s) 429
MwoI GCNNNNNNNGC 3 cut(s) 154, 386, 464
NciI CCSGG 1 cut(s) 150
NcoI CCATGG 1 cut(s) 618
NdeII GATC 2 cut(s) 119, 366
NlaIII CATG 3 cut(s) 622, 636, 704
NlaIV GGNNCC 1 cut(s) 318
NsiI ATGCAT 1 cut(s) 706
PaeR7I CTCGAG 1 cut(s) 260
PcsI WCGNNNNNNNCGW 1 cut(s) 115
PctI GAATGC 1 cut(s) 696
PdmI GAANNNNTTC 1 cut(s) 822
PfeI GAWTC 3 cut(s) 177, 528, 818
PflMI CCANNNNNTGG 1 cut(s) 434
PleI GAGTC 3 cut(s) 252, 820, 878
PpsI GAGTC 3 cut(s) 252, 820, 878
Ppu21I YACGTR 1 cut(s) 329
Psp6I CCWGG 1 cut(s) 427
PspGI CCWGG 1 cut(s) 427
PspN4I GGNNCC 1 cut(s) 318
PspPI GGNCC 4 cut(s) 29, 147, 274, 317
PstNI CAGNNNCTG 3 cut(s) 434, 692, 821
PsuI RGATCY 1 cut(s) 366
RsaI GTAC 2 cut(s) 398, 616
RsaNI GTAC 2 cut(s) 397, 615
SaqAI TTAA 6 cut(s) 441, 591, 744, 765, 795, 843
Sau3AI GATC 2 cut(s) 119, 366
Sau96I GGNCC 4 cut(s) 29, 147, 274, 317
SchI GAGTC 3 cut(s) 252, 821, 879
ScrFI CCNGG 2 cut(s) 150, 429
SduI GDGCHC 2 cut(s) 169, 855
SfaNI GCATC 1 cut(s) 410
Sfr274I CTCGAG 1 cut(s) 260
SinI GGWCC 1 cut(s) 274
SlaI CTCGAG 1 cut(s) 260
SmlI CTYRAG 2 cut(s) 128, 260
SmoI CTYRAG 2 cut(s) 128, 260
Sse9I AATT 6 cut(s) 33, 233, 452, 561, 578, 760
SspI AATATT 1 cut(s) 916
SspMI CTAG 2 cut(s) 174, 255
StyD4I CCNGG 2 cut(s) 148, 427
StyI CCWWGG 2 cut(s) 160, 618
TaaI ACNGT 4 cut(s) 274, 518, 604, 614
TaiI ACGT 3 cut(s) 112, 331, 419
TaqI TCGA 3 cut(s) 261, 419, 865
TasI AATT 6 cut(s) 33, 233, 452, 561, 578, 760
TfiI GAWTC 3 cut(s) 177, 528, 818
Tru1I TTAA 6 cut(s) 441, 591, 744, 765, 795, 843
Tru9I TTAA 6 cut(s) 441, 591, 744, 765, 795, 843
TspDTI ATGAA 5 cut(s) 226, 390, 689, 783, 871
Van91I CCANNNNNTGG 1 cut(s) 434
VneI GTGCAC 2 cut(s) 165, 851
VpaK11BI GGWCC 1 cut(s) 274
XapI RAATTY 2 cut(s) 233, 561
XcmI CCANNNNNNNNNTGG 1 cut(s) 490
XhoI CTCGAG 1 cut(s) 260
XmnI GAANNNNTTC 1 cut(s) 822
XspI CTAG 2 cut(s) 174, 255
Zsp2I ATGCAT 1 cut(s) 706
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.