Rroxscaffold_1G00017220

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0001041
Physical Location & Seq
Reverse (-)
21388845 .. 21394552
5708 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00017220.1

Sequence Viewer

Length: 189 bp
ATGTGGGGAGACATTCAGGCACGGCCTGATGATGTGAATAACCACAACTTCAGTGACTCTGGGCAGAGTCAAACTCGATCGAACTGCTGTAGTTTTAATTACCATGATTTGAACCGGGAGATGAACAGCCACGCCAACCGCCTTGGCGAGGCAACTCTGGCTGATACGTTTCTTGCTGACCGTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

62

Amino Acids

7.06

Weight (kDa)

4.8

Isoelectric Point (pI)

27.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 139
AcuI CTGAAG 1 cut(s) 34
AfiI CCNNNNNNNGG 1 cut(s) 148
AgsI TTSAA 1 cut(s) 112
Alw26I GTCTC 1 cut(s) 3
AoxI GGCC 1 cut(s) 23
AsuC2I CCSGG 1 cut(s) 116
BceAI ACGGC 1 cut(s) 38
BcgI CGANNNNNNTGC 2 cut(s) 66, 100
BcnI CCSGG 1 cut(s) 116
BcoDI GTCTC 1 cut(s) 3
BfmI CTRYAG 1 cut(s) 88
Bme1390I CCNGG 1 cut(s) 116
BmrFI CCNGG 1 cut(s) 116
BplI GAGNNNNNCTC 2 cut(s) 58, 90
BpuMI CCSGG 1 cut(s) 116
BsaJI CCNNGG 1 cut(s) 142
Bsc4I CCNNNNNNNGG 1 cut(s) 148
BseDI CCNNGG 1 cut(s) 142
BseLI CCNNNNNNNGG 1 cut(s) 148
Bsh1285I CGRYCG 1 cut(s) 80
BshFI GGCC 1 cut(s) 25
BsiEI CGRYCG 1 cut(s) 80
BsiSI CCGG 1 cut(s) 115
BslI CCNNNNNNNGG 1 cut(s) 148
BsmAI GTCTC 1 cut(s) 3
BsnI GGCC 1 cut(s) 25
Bsp143I GATC 1 cut(s) 77
BspACI CCGC 1 cut(s) 139
BspANI GGCC 1 cut(s) 25
BssECI CCNNGG 1 cut(s) 142
BssMI GATC 1 cut(s) 77
BssT1I CCWWGG 1 cut(s) 142
Bst4CI ACNGT 1 cut(s) 182
BstENI CCTNNNNNAGG 1 cut(s) 146
BstKTI GATC 1 cut(s) 80
BstMAI GTCTC 1 cut(s) 3
BstMBI GATC 1 cut(s) 77
BstMCI CGRYCG 1 cut(s) 80
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstSCI CCNGG 1 cut(s) 114
BstSFI CTRYAG 1 cut(s) 88
BsuRI GGCC 1 cut(s) 25
BtsIMutI CAGTG 1 cut(s) 58
CviAII CATG 1 cut(s) 104
CviJI RGCY 3 cut(s) 25, 129, 161
CviKI_1 RGCY 3 cut(s) 25, 129, 161
DpnI GATC 1 cut(s) 79
DpnII GATC 1 cut(s) 77
Eco130I CCWWGG 1 cut(s) 142
Eco57I CTGAAG 1 cut(s) 34
EcoNI CCTNNNNNAGG 1 cut(s) 146
EcoT14I CCWWGG 1 cut(s) 142
ErhI CCWWGG 1 cut(s) 142
FaeI CATG 1 cut(s) 107
FaiI YATR 1 cut(s) 105
FatI CATG 1 cut(s) 103
HaeIII GGCC 1 cut(s) 25
HapII CCGG 1 cut(s) 115
Hin1II CATG 1 cut(s) 107
HinfI GANTC 2 cut(s) 56, 67
HpaII CCGG 1 cut(s) 115
HpyCH4III ACNGT 1 cut(s) 182
HpyCH4IV ACGT 1 cut(s) 167
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
HpySE526I ACGT 1 cut(s) 167
Hsp92II CATG 1 cut(s) 107
Kzo9I GATC 1 cut(s) 77
LpnPI CCDG 5 cut(s) 2, 39, 45, 128, 143
MaeII ACGT 1 cut(s) 167
MaeIII GTNAC 1 cut(s) 53
MalI GATC 1 cut(s) 79
MboI GATC 1 cut(s) 77
MluCI AATT 1 cut(s) 97
MlyI GAGTC 2 cut(s) 50, 76
MnlI CCTC 1 cut(s) 142
MseI TTAA 1 cut(s) 96
MspI CCGG 1 cut(s) 115
MspR9I CCNGG 1 cut(s) 116
MwoI GCNNNNNNNGC 1 cut(s) 158
NciI CCSGG 1 cut(s) 116
NdeII GATC 1 cut(s) 77
NlaIII CATG 1 cut(s) 107
NmuCI GTSAC 1 cut(s) 53
Ple19I CGATCG 1 cut(s) 80
PleI GAGTC 2 cut(s) 50, 75
PpsI GAGTC 2 cut(s) 50, 75
PvuI CGATCG 1 cut(s) 80
SaqAI TTAA 1 cut(s) 96
Sau3AI GATC 1 cut(s) 77
SchI GAGTC 2 cut(s) 50, 76
ScrFI CCNGG 1 cut(s) 116
SetI ASST 1 cut(s) 170
SfcI CTRYAG 1 cut(s) 88
Sse9I AATT 1 cut(s) 97
SsiI CCGC 1 cut(s) 139
StyD4I CCNGG 1 cut(s) 114
StyI CCWWGG 1 cut(s) 142
TaaI ACNGT 1 cut(s) 182
TaiI ACGT 1 cut(s) 170
TaqI TCGA 2 cut(s) 76, 80
TasI AATT 1 cut(s) 97
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TscAI CASTG 1 cut(s) 58
TseFI GTSAC 1 cut(s) 53
Tsp45I GTSAC 1 cut(s) 53
TspDTI ATGAA 1 cut(s) 137
TspRI CASTG 1 cut(s) 58
XagI CCTNNNNNAGG 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.