Rh5AG481000

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0001041
Physical Location & Seq
Reverse (-)
82476360 .. 82479383
3024 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG481000.1

Sequence Viewer

Length: 1182 bp
ATGTCATTTCTGGACGACGATGTAGTTGCCCTAATTGCTAACGAGGTTTGTGAGAAAGATGATAGAAAGTCCTTCTCCGAGGTCTGCAAGCAATGGTGTAGAGTAGAAGGTCTAAGCCGATCATCACTTGAGGTTTTCCATAACTGGCCCGGTTTGCCCCTTGGTGCACTAACTAGATTCCCAAATGTAGTCGATTTGGAAGTAAAGTATGTTAGAACTGAGGCTGACCTTGAATTCATAGCCCAAACTTGTCCTAGACTCGAGAGCATTACGGTCCACTCCGATATCCGTATAGAGAGTGATGACATTGTTTTGGGGCCAAAAAGTCTAGTTGCTTTGGGGAATGGGTGTCCACAATTGTCCAGAGTTAAGCTTGTGGGGAGGGAAGCAGTAGGGGATTCGGGAGTTGTGGCGCTTGTTCATTCAGCACGAAACTTGAAGGCTCTGGTTTTGGCATGTGATTTGTGGATCTCAGATGAAGCCTTGAGAGCCATTGGGTCCGCATCTTCCATTGGCACGTTGAAGTTGCCAGGGTCTCGCATTAAGGATGTGGAATTGGGTGTTTTAGCAAATGGGACATCTTCCATCAGCACTTTGGAGTTGGTAAGGTGTCGCAAGATTACGGATGTGGGATTGGGTTTTTTGGCAAATTGGTCTATCTCGAAAACCCTCAAGAAATTGGTCCTTGATGGCTGCAACAAAATCACTGATACTGGAGTCCAGCTTTTGCGGAAAATGTGTAGCTTGGAGCGCCTAGATTTGTCTAACTGTGGGAGTAGAATCACTAATGCTGGAGGTTCAGCAATCTCTGCAATTCAAACCCTCAGGGAATTGCTATTGGTTAATCTTCAGACCGTGTCAAACAGTACCATGGTTGCTCTTGCATGGAATTGCCCCAACTTGGAAATACTTGATTTACGGGGCTGTAAAGCTGTAACAGGAGCTGGCATTCGTGCATTTTCAGGTCATAAGTGTTTGAAACGCCTTGTATTGCTTAACTTACCCTTTCACAATTTTAATGAAGCTGATTTGGAAAGCATAGCCCTTGGATGCCCGTCGTTGGAGTCAGAATCTGTTCTGGTGGACAATGTGATTAAAGTGGTGCACGACAACACTCGAAGAGTCGTCAAGTTCATTAGTATATTCACGCTGTCCTTCAGATTGAATATTGAGCAGATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

393

Amino Acids

42.81

Weight (kDa)

6.98

Isoelectric Point (pI)

32.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7885 PF25372 157 - 227 6.5e-08 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 501, 730
AclWI GGATC 1 cut(s) 476
AcsI RAATTY 1 cut(s) 233
AcuI CTGAAG 2 cut(s) 833, 1141
AfaI GTAC 1 cut(s) 868
AfiI CCNNNNNNNGG 2 cut(s) 901, 1060
AgsI TTSAA 6 cut(s) 233, 439, 523, 818, 979, 1165
AjnI CCWGG 1 cut(s) 529
AluBI AGCT 6 cut(s) 373, 724, 744, 932, 944, 1025
AluI AGCT 6 cut(s) 373, 724, 744, 932, 944, 1025
Alw21I GWGCWC 2 cut(s) 169, 1107
Alw26I GTCTC 1 cut(s) 540
Alw44I GTGCAC 2 cut(s) 165, 1103
AlwI GGATC 1 cut(s) 476
AlwNI CAGNNNCTG 2 cut(s) 944, 1073
Ama87I CYCGRG 1 cut(s) 260
AoxI GGCC 2 cut(s) 146, 317
ApaLI GTGCAC 2 cut(s) 165, 1103
ApeKI GCWGC 1 cut(s) 693
ApoI RAATTY 1 cut(s) 233
Asp700I GAANNNNTTC 1 cut(s) 1074
AspLEI GCGC 2 cut(s) 415, 753
AspS9I GGNCC 5 cut(s) 147, 274, 317, 498, 682
AsuC2I CCSGG 1 cut(s) 150
AvaI CYCGRG 1 cut(s) 260
AvaII GGWCC 3 cut(s) 274, 498, 682
AxyI CCTNAGG 1 cut(s) 824
BaeGI GKGCMC 2 cut(s) 169, 1107
BaeI ACNNNNGTAYC 2 cut(s) 702, 735
Bbv12I GWGCWC 2 cut(s) 169, 1107
BbvI GCAGC 1 cut(s) 680
BccI CCATC 2 cut(s) 593, 683
BcgI CGANNNNNNTGC 2 cut(s) 8, 42
BciT130I CCWGG 1 cut(s) 531
BcnI CCSGG 1 cut(s) 150
BcoDI GTCTC 1 cut(s) 540
BfaI CTAG 4 cut(s) 174, 255, 329, 755
BfoI RGCGCY 2 cut(s) 416, 754
BisI GCNGC 1 cut(s) 694
BlsI GCNGC 1 cut(s) 695
Bme1390I CCNGG 2 cut(s) 150, 531
Bme18I GGWCC 3 cut(s) 274, 498, 682
BmeT110I CYCGRG 1 cut(s) 260
BmgT120I GGNCC 5 cut(s) 147, 274, 317, 498, 682
BmiI GGNNCC 2 cut(s) 318, 499
BmrFI CCNGG 2 cut(s) 150, 531
BmsI GCATC 2 cut(s) 512, 1040
BpmI CTGGAG 2 cut(s) 735, 813
BpuEI CTTGAG 3 cut(s) 149, 505, 656
BpuMI CCSGG 1 cut(s) 150
BsaI GGTCTC 1 cut(s) 540
BsaJI CCNNGG 5 cut(s) 78, 160, 530, 870, 1045
Bsc4I CCNNNNNNNGG 2 cut(s) 901, 1060
Bse1I ACTGG 2 cut(s) 149, 718
Bse21I CCTNAGG 1 cut(s) 824
Bse3DI GCAATG 1 cut(s) 98
BseBI CCWGG 1 cut(s) 531
BseDI CCNNGG 5 cut(s) 78, 160, 530, 870, 1045
BseGI GGATG 3 cut(s) 553, 631, 1055
BseLI CCNNNNNNNGG 2 cut(s) 901, 1060
BseMI GCAATG 1 cut(s) 98
BseMII CTCAG 3 cut(s) 210, 486, 838
BseNI ACTGG 2 cut(s) 149, 718
BseSI GKGCMC 2 cut(s) 169, 1107
BseXI GCAGC 1 cut(s) 680
BshFI GGCC 2 cut(s) 148, 319
BsiHKAI GWGCWC 2 cut(s) 169, 1107
BsiHKCI CYCGRG 1 cut(s) 260
BsiSI CCGG 1 cut(s) 150
BslFI GGGAC 1 cut(s) 589
BslI CCNNNNNNNGG 2 cut(s) 901, 1060
BsmAI GTCTC 1 cut(s) 540
BsmFI GGGAC 1 cut(s) 589
BsmI GAATGC 1 cut(s) 948
BsnI GGCC 2 cut(s) 148, 319
Bso31I GGTCTC 1 cut(s) 540
BsoBI CYCGRG 1 cut(s) 260
Bsp1286I GDGCHC 2 cut(s) 169, 1107
Bsp143I GATC 2 cut(s) 119, 468
Bsp19I CCATGG 1 cut(s) 870
BspACI CCGC 2 cut(s) 501, 730
BspANI GGCC 2 cut(s) 148, 319
BspCNI CTCAG 3 cut(s) 211, 485, 837
BspLI GGNNCC 2 cut(s) 318, 499
BspPI GGATC 1 cut(s) 476
BspTNI GGTCTC 1 cut(s) 540
BsrDI GCAATG 1 cut(s) 98
BsrI ACTGG 2 cut(s) 149, 718
BssECI CCNNGG 5 cut(s) 78, 160, 530, 870, 1045
BssMI GATC 2 cut(s) 119, 468
BssT1I CCWWGG 3 cut(s) 160, 870, 1045
Bst2UI CCWGG 1 cut(s) 531
Bst4CI ACNGT 4 cut(s) 274, 770, 856, 866
Bst6I CTCTTC 1 cut(s) 1114
BstAPI GCANNNNNTGC 1 cut(s) 809
BstC8I GCNNGC 2 cut(s) 89, 946
BstDEI CTNAG 4 cut(s) 113, 219, 472, 824
BstDSI CCRYGG 1 cut(s) 870
BstF5I GGATG 3 cut(s) 553, 631, 1055
BstH2I RGCGCY 2 cut(s) 416, 754
BstHHI GCGC 2 cut(s) 415, 753
BstKTI GATC 2 cut(s) 122, 471
BstMAI GTCTC 1 cut(s) 540
BstMBI GATC 2 cut(s) 119, 468
BstMWI GCNNNNNNNGC 5 cut(s) 35, 154, 488, 750, 809
BstNI CCWGG 1 cut(s) 531
BstNSI RCATGY 1 cut(s) 459
BstSCI CCNGG 2 cut(s) 148, 529
BstSLI GKGCMC 2 cut(s) 169, 1107
BstV1I GCAGC 1 cut(s) 680
BstX2I RGATCY 1 cut(s) 468
BstYI RGATCY 1 cut(s) 468
Bsu36I CCTNAGG 1 cut(s) 824
BsuRI GGCC 2 cut(s) 148, 319
BtgI CCRYGG 1 cut(s) 870
BtsCI GGATG 3 cut(s) 553, 631, 1055
BtsIMutI CAGTG 1 cut(s) 705
Cac8I GCNNGC 2 cut(s) 89, 946
CaiI CAGNNNCTG 2 cut(s) 944, 1073
CfoI GCGC 2 cut(s) 415, 753
Cfr13I GGNCC 5 cut(s) 147, 274, 317, 498, 682
Csp6I GTAC 1 cut(s) 867
CviAII CATG 3 cut(s) 456, 871, 885
CviQI GTAC 1 cut(s) 867
DdeI CTNAG 4 cut(s) 113, 219, 472, 824
DpnI GATC 2 cut(s) 121, 470
DpnII GATC 2 cut(s) 119, 468
Eam1104I CTCTTC 1 cut(s) 1114
EarI CTCTTC 1 cut(s) 1114
Eco130I CCWWGG 3 cut(s) 160, 870, 1045
Eco31I GGTCTC 1 cut(s) 540
Eco32I GATATC 1 cut(s) 286
Eco47I GGWCC 3 cut(s) 274, 498, 682
Eco57I CTGAAG 2 cut(s) 833, 1141
Eco81I CCTNAGG 1 cut(s) 824
Eco88I CYCGRG 1 cut(s) 260
EcoRI GAATTC 1 cut(s) 233
EcoRII CCWGG 1 cut(s) 529
EcoRV GATATC 1 cut(s) 286
EcoT14I CCWWGG 3 cut(s) 160, 870, 1045
ErhI CCWWGG 3 cut(s) 160, 870, 1045
FaeI CATG 3 cut(s) 459, 874, 888
FaqI GGGAC 1 cut(s) 589
FatI CATG 3 cut(s) 455, 870, 884
Fnu4HI GCNGC 1 cut(s) 694
FokI GGATG 3 cut(s) 560, 638, 1062
Fsp4HI GCNGC 1 cut(s) 694
FspBI CTAG 4 cut(s) 174, 255, 329, 755
GlaI GCGC 2 cut(s) 414, 752
GluI GCNGC 1 cut(s) 694
GsuI CTGGAG 2 cut(s) 735, 813
HaeII RGCGCY 2 cut(s) 416, 754
HaeIII GGCC 2 cut(s) 148, 319
HapII CCGG 1 cut(s) 150
HhaI GCGC 2 cut(s) 415, 753
Hin1II CATG 3 cut(s) 459, 874, 888
Hin6I GCGC 2 cut(s) 413, 751
HinP1I GCGC 2 cut(s) 413, 751
HindIII AAGCTT 1 cut(s) 371
HinfI GANTC 8 cut(s) 177, 258, 398, 717, 780, 1064, 1070, 1122
HpaII CCGG 1 cut(s) 150
Hpy166II GTNNAC 5 cut(s) 167, 277, 353, 1084, 1105
Hpy188I TCNGA 6 cut(s) 79, 283, 475, 852, 1069, 1160
Hpy188III TCNNGA 6 cut(s) 11, 262, 363, 402, 661, 673
Hpy8I GTNNAC 5 cut(s) 167, 277, 353, 1084, 1105
Hpy99I CGWCG 2 cut(s) 20, 1060
HpyAV CCTTC 4 cut(s) 82, 101, 433, 1165
HpyCH4III ACNGT 4 cut(s) 274, 770, 856, 866
HpyCH4IV ACGT 1 cut(s) 518
HpyCH4V TGCA 7 cut(s) 87, 167, 696, 812, 884, 956, 1105
HpyF10VI GCNNNNNNNGC 5 cut(s) 35, 154, 488, 750, 809
HpyF3I CTNAG 4 cut(s) 113, 219, 472, 824
HpySE526I ACGT 1 cut(s) 518
Hsp92II CATG 3 cut(s) 459, 874, 888
HspAI GCGC 2 cut(s) 413, 751
Kzo9I GATC 2 cut(s) 119, 468
LmnI GCTCC 2 cut(s) 748, 941
Lsp1109I GCAGC 1 cut(s) 680
LweI GCATC 2 cut(s) 512, 1040
MaeI CTAG 4 cut(s) 174, 255, 329, 755
MaeII ACGT 1 cut(s) 518
MaeIII GTNAC 1 cut(s) 934
MalI GATC 2 cut(s) 121, 470
MboI GATC 2 cut(s) 119, 468
MboII GAAGA 4 cut(s) 498, 573, 839, 1131
MfeI CAATTG 1 cut(s) 356
MflI RGATCY 1 cut(s) 468
MhlI GDGCHC 2 cut(s) 169, 1107
MlyI GAGTC 4 cut(s) 252, 726, 1073, 1131
MmeI TCCRAC 1 cut(s) 1041
MnlI CCTC 8 cut(s) 37, 73, 124, 214, 375, 680, 788, 833
MroXI GAANNNNTTC 1 cut(s) 1074
MseI TTAA 6 cut(s) 369, 543, 843, 996, 1017, 1095
MspI CCGG 1 cut(s) 150
MspR9I CCNGG 2 cut(s) 150, 531
MunI CAATTG 1 cut(s) 356
Mva1269I GAATGC 1 cut(s) 948
MvaI CCWGG 1 cut(s) 531
MwoI GCNNNNNNNGC 5 cut(s) 35, 154, 488, 750, 809
NciI CCSGG 1 cut(s) 150
NcoI CCATGG 1 cut(s) 870
NdeII GATC 2 cut(s) 119, 468
NlaIII CATG 3 cut(s) 459, 874, 888
NlaIV GGNNCC 2 cut(s) 318, 499
NspI RCATGY 1 cut(s) 459
PaeR7I CTCGAG 1 cut(s) 260
PctI GAATGC 1 cut(s) 948
PdmI GAANNNNTTC 1 cut(s) 1074
PfeI GAWTC 4 cut(s) 177, 398, 780, 1070
PflFI GACNNNGTC 1 cut(s) 856
PkrI GCNGC 1 cut(s) 695
PleI GAGTC 4 cut(s) 252, 725, 1072, 1130
PpsI GAGTC 4 cut(s) 252, 725, 1072, 1130
Psp6I CCWGG 1 cut(s) 529
PspGI CCWGG 1 cut(s) 529
PspN4I GGNNCC 2 cut(s) 318, 499
PspPI GGNCC 5 cut(s) 147, 274, 317, 498, 682
PstNI CAGNNNCTG 2 cut(s) 944, 1073
PsuI RGATCY 1 cut(s) 468
PsyI GACNNNGTC 1 cut(s) 856
RsaI GTAC 1 cut(s) 868
RsaNI GTAC 1 cut(s) 867
SaqAI TTAA 6 cut(s) 369, 543, 843, 996, 1017, 1095
SatI GCNGC 1 cut(s) 694
Sau3AI GATC 2 cut(s) 119, 468
Sau96I GGNCC 5 cut(s) 147, 274, 317, 498, 682
SchI GAGTC 4 cut(s) 252, 726, 1073, 1131
ScrFI CCNGG 2 cut(s) 150, 531
SduI GDGCHC 2 cut(s) 169, 1107
SfaNI GCATC 2 cut(s) 512, 1040
Sfr274I CTCGAG 1 cut(s) 260
SinI GGWCC 3 cut(s) 274, 498, 682
SlaI CTCGAG 1 cut(s) 260
SmlI CTYRAG 4 cut(s) 128, 260, 484, 671
SmoI CTYRAG 4 cut(s) 128, 260, 484, 671
SsiI CCGC 2 cut(s) 501, 730
SspI AATATT 1 cut(s) 1168
SspMI CTAG 4 cut(s) 174, 255, 329, 755
StyD4I CCNGG 2 cut(s) 148, 529
StyI CCWWGG 3 cut(s) 160, 870, 1045
TaaI ACNGT 4 cut(s) 274, 770, 856, 866
TaiI ACGT 1 cut(s) 521
TaqI TCGA 4 cut(s) 192, 261, 662, 1117
TfiI GAWTC 4 cut(s) 177, 398, 780, 1070
Tru1I TTAA 6 cut(s) 369, 543, 843, 996, 1017, 1095
Tru9I TTAA 6 cut(s) 369, 543, 843, 996, 1017, 1095
TscAI CASTG 1 cut(s) 712
TseI GCWGC 1 cut(s) 693
TspDTI ATGAA 5 cut(s) 226, 410, 492, 1035, 1123
TspGWI ACGGA 2 cut(s) 278, 638
TspRI CASTG 1 cut(s) 712
Tth111I GACNNNGTC 1 cut(s) 856
VneI GTGCAC 2 cut(s) 165, 1103
VpaK11BI GGWCC 3 cut(s) 274, 498, 682
XapI RAATTY 1 cut(s) 233
XceI RCATGY 1 cut(s) 459
XcmI CCANNNNNNNNNTGG 1 cut(s) 592
XhoI CTCGAG 1 cut(s) 260
XmnI GAANNNNTTC 1 cut(s) 1074
XspI CTAG 4 cut(s) 174, 255, 329, 755
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.