Rh7BG072600

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0001041
Physical Location & Seq
Forward (+)
4926256 .. 4927754
1499 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG072600.1

Sequence Viewer

Length: 1113 bp
ATGGCTGTAGACACCAAAAGCAAATCAGGGAAAATTTCTGTGCTCAGCGACGATTTACTTGGCCTAATCCTCAACCACGTCCCCAACAAAGACGATAGAAAATCGTTCTCCGAGGTTTGCAAGCAATGGCTTAGAGTCGAAGGTCTAAACCGGTCATCACTCTGCTTTGACAAACCGGAAATTCCCCTAGCTGCGTTGACTAGGTTCCCAAACTTAGTCCACTTCGAAACATGGAAGCTTACGACCGACACCGACCTCGAGTTCATAGCCCAAACCTGTCCGCAAATCGAGGTCATCAAGGTCACCAACTATGGTTCACACTTCCTGGGGCGTAAAGGTCTATGGGCTTTGGGGAATGGGTGTCCCAGACTGTCCAAGGTTTCACTTTTCGGAAATAGAATTGGCAACGCTGCGGTTTTTGCTCTTGTGAATTCGGCACACAGTTTGACGTCTTTGGAATTTAGATGTAATTGCTTCATCTCGGATCCAGTACTCAGAGCAATTGGGTCGGCAACTTATATTACGACTCTGGAGTTTACGAGCTGTTGCAACATTACTGATCTCGGTTTGGGATTTTTGGCAAATGGGTGTGTCTCTAAAACCCTCAAGAGATTGGTGCTTGAGGAAATCAAAGGGATCACTGATACTGGGGTTGAGCTTTTGCGCAAAATGTGTAGCTTGGAACAACTCAATGTGTCTTACCGTTTGTCAAACTATTGGCCACAACTGAAGATCACTGACATTGGAGGTGTGGCGATCTCTGCTATTCAGACCCTCAAAGAATTGAGATTGTGTCTTGAGGGCATCTCAGACGCCACCATTGTTGCTCTTGCTGAGAATTGCATCAACTTGGAGATACTTGATTTAAAGGGTTGTCATGAGGTGAGGGGAGATGGCATTCGTGCATTTTCAAGTCACAAGTGCTTGAAACACCTTGTATTGCTCGGTTTGGGGGATTTTGATCTTTCGGATGTGGAAAGCATAGCGCTTGGATGCCCGTTATTGGAGTCTGTTGTGGTGGATTTGAGCTTGAGGCTGGATCCAGCTTGGAGCTCTGAATTGATGCATGACCGCACTAAAAGTGTCATCAAGTTTTCTCAAGTTAGTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

370

Amino Acids

40.74

Weight (kDa)

6.46

Isoelectric Point (pI)

25.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box_5 PF18511 15 - 52 8.4e-07 F-box
DUF7885 PF25372 184 - 333 1.7e-07 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 452
Acc16I TGCGCA 1 cut(s) 665
AccI GTMKAC 1 cut(s) 9
AciI CCGC 3 cut(s) 281, 413, 1072
AclWI GGATC 5 cut(s) 479, 492, 644, 1034, 1047
AcoI YGGCCR 1 cut(s) 719
AcsI RAATTY 4 cut(s) 33, 180, 430, 458
AcuI CTGAAG 1 cut(s) 749
AcyI GRCGYC 2 cut(s) 449, 813
AfaI GTAC 1 cut(s) 492
AfeI AGCGCT 1 cut(s) 987
AfiI CCNNNNNNNGG 1 cut(s) 1003
AgeI ACCGGT 1 cut(s) 150
AgsI TTSAA 2 cut(s) 912, 928
AjiI CACGTC 1 cut(s) 79
AjnI CCWGG 1 cut(s) 324
AluBI AGCT 8 cut(s) 191, 238, 543, 658, 678, 1029, 1046, 1053
AluI AGCT 8 cut(s) 191, 238, 543, 658, 678, 1029, 1046, 1053
Alw21I GWGCWC 2 cut(s) 45, 1055
Alw26I GTCTC 1 cut(s) 598
AlwI GGATC 5 cut(s) 479, 492, 644, 1034, 1047
Ama87I CYCGRG 1 cut(s) 257
Aor51HI AGCGCT 1 cut(s) 987
AoxI GGCC 2 cut(s) 61, 719
ApeKI GCWGC 2 cut(s) 191, 410
ApoI RAATTY 4 cut(s) 33, 180, 430, 458
AsiGI ACCGGT 1 cut(s) 150
AspLEI GCGC 2 cut(s) 666, 988
AsuHPI GGTGA 2 cut(s) 295, 895
AsuII TTCGAA 1 cut(s) 225
AvaI CYCGRG 1 cut(s) 257
BaeI ACNNNNGTAYC 2 cut(s) 636, 669
BalI TGGCCA 1 cut(s) 721
BamHI GGATCC 2 cut(s) 484, 1039
BanII GRGCYC 1 cut(s) 1055
Bbv12I GWGCWC 2 cut(s) 45, 1055
BbvI GCAGC 2 cut(s) 178, 397
BccI CCATC 1 cut(s) 887
BcgI CGANNNNNNTGC 2 cut(s) 489, 523
BciT130I CCWGG 1 cut(s) 326
BcoDI GTCTC 1 cut(s) 598
BfaI CTAG 2 cut(s) 188, 201
BfmI CTRYAG 1 cut(s) 6
BfoI RGCGCY 1 cut(s) 989
BisI GCNGC 2 cut(s) 192, 411
BlpI GCTNAGC 1 cut(s) 44
BlsI GCNGC 2 cut(s) 193, 412
BmcAI AGTACT 1 cut(s) 492
Bme1390I CCNGG 1 cut(s) 326
BmeT110I CYCGRG 1 cut(s) 257
BmgBI CACGTC 1 cut(s) 79
BmiI GGNNCC 3 cut(s) 206, 486, 1041
BmrFI CCNGG 1 cut(s) 326
BmrI ACTGGG 1 cut(s) 657
BmsI GCATC 4 cut(s) 813, 852, 983, 1053
BmuI ACTGGG 1 cut(s) 657
BplI GAGNNNNNCTC 2 cut(s) 791, 823
BpmI CTGGAG 1 cut(s) 551
Bpu1102I GCTNAGC 1 cut(s) 44
Bpu14I TTCGAA 1 cut(s) 225
BpuEI CTTGAG 5 cut(s) 590, 641, 818, 1051, 1083
BsaBI GATNNNNATC 1 cut(s) 960
BsaHI GRCGYC 2 cut(s) 449, 813
BsaJI CCNNGG 3 cut(s) 111, 325, 375
BsaWI WCCGGW 2 cut(s) 150, 175
Bsc4I CCNNNNNNNGG 1 cut(s) 1003
Bse118I RCCGGY 1 cut(s) 150
Bse1I ACTGG 2 cut(s) 488, 652
Bse3DI GCAATG 1 cut(s) 131
Bse8I GATNNNNATC 1 cut(s) 960
BseBI CCWGG 1 cut(s) 326
BseDI CCNNGG 3 cut(s) 111, 325, 375
BseGI GGATG 2 cut(s) 976, 998
BseJI GATNNNNATC 1 cut(s) 960
BseLI CCNNNNNNNGG 1 cut(s) 1003
BseMI GCAATG 1 cut(s) 131
BseMII CTCAG 4 cut(s) 58, 508, 822, 825
BseNI ACTGG 2 cut(s) 488, 652
BseXI GCAGC 2 cut(s) 178, 397
Bsh1285I CGRYCG 1 cut(s) 246
BshFI GGCC 2 cut(s) 63, 721
BshTI ACCGGT 1 cut(s) 150
BsiEI CGRYCG 1 cut(s) 246
BsiHKAI GWGCWC 2 cut(s) 45, 1055
BsiHKCI CYCGRG 1 cut(s) 257
BsiSI CCGG 2 cut(s) 151, 176
BslFI GGGAC 2 cut(s) 65, 348
BslI CCNNNNNNNGG 1 cut(s) 1003
BsmAI GTCTC 1 cut(s) 598
BsmFI GGGAC 2 cut(s) 65, 348
BsmI GAATGC 1 cut(s) 897
BsnI GGCC 2 cut(s) 63, 721
BsoBI CYCGRG 1 cut(s) 257
Bsp119I TTCGAA 1 cut(s) 225
Bsp1286I GDGCHC 2 cut(s) 45, 1055
Bsp143I GATC 7 cut(s) 484, 559, 636, 732, 756, 961, 1039
Bsp1720I GCTNAGC 1 cut(s) 44
BspACI CCGC 3 cut(s) 281, 413, 1072
BspANI GGCC 2 cut(s) 63, 721
BspCNI CTCAG 4 cut(s) 57, 507, 821, 826
BspHI TCATGA 1 cut(s) 877
BspLI GGNNCC 3 cut(s) 206, 486, 1041
BspPI GGATC 5 cut(s) 479, 492, 644, 1034, 1047
BspT104I TTCGAA 1 cut(s) 225
BsrDI GCAATG 1 cut(s) 131
BsrFI RCCGGY 1 cut(s) 150
BsrI ACTGG 2 cut(s) 488, 652
BssAI RCCGGY 1 cut(s) 150
BssECI CCNNGG 3 cut(s) 111, 325, 375
BssMI GATC 7 cut(s) 484, 559, 636, 732, 756, 961, 1039
BssNI GRCGYC 2 cut(s) 449, 813
BssT1I CCWWGG 1 cut(s) 375
Bst2UI CCWGG 1 cut(s) 326
Bst4CI ACNGT 3 cut(s) 372, 443, 704
BstACI GRCGYC 2 cut(s) 449, 813
BstBI TTCGAA 1 cut(s) 225
BstC8I GCNNGC 1 cut(s) 122
BstDEI CTNAG 6 cut(s) 44, 131, 214, 494, 808, 834
BstEII GGTNACC 1 cut(s) 301
BstF5I GGATG 2 cut(s) 976, 998
BstH2I RGCGCY 1 cut(s) 989
BstHHI GCGC 2 cut(s) 666, 988
BstKTI GATC 7 cut(s) 487, 562, 639, 735, 759, 964, 1042
BstMAI GTCTC 1 cut(s) 598
BstMBI GATC 7 cut(s) 484, 559, 636, 732, 756, 961, 1039
BstMCI CGRYCG 1 cut(s) 246
BstMWI GCNNNNNNNGC 2 cut(s) 419, 761
BstNI CCWGG 1 cut(s) 326
BstPI GGTNACC 1 cut(s) 301
BstSCI CCNGG 1 cut(s) 324
BstSFI CTRYAG 1 cut(s) 6
BstV1I GCAGC 2 cut(s) 178, 397
BstX2I RGATCY 2 cut(s) 484, 1039
BstYI RGATCY 2 cut(s) 484, 1039
BsuRI GGCC 2 cut(s) 63, 721
BtrI CACGTC 1 cut(s) 79
BtsCI GGATG 2 cut(s) 976, 998
BtsIMutI CAGTG 2 cut(s) 639, 735
Cac8I GCNNGC 1 cut(s) 122
CciI TCATGA 1 cut(s) 877
CfoI GCGC 2 cut(s) 666, 988
Cfr10I RCCGGY 1 cut(s) 150
CseI GACGC 1 cut(s) 821
Csp6I GTAC 1 cut(s) 491
CspAI ACCGGT 1 cut(s) 150
CspCI CAANNNNNGTGG 2 cut(s) 805, 840
CviAII CATG 3 cut(s) 231, 878, 1067
CviQI GTAC 1 cut(s) 491
DdeI CTNAG 6 cut(s) 44, 131, 214, 494, 808, 834
DpnI GATC 7 cut(s) 486, 561, 638, 734, 758, 963, 1041
DpnII GATC 7 cut(s) 484, 559, 636, 732, 756, 961, 1039
DraI TTTAAA 1 cut(s) 867
EaeI YGGCCR 1 cut(s) 719
Ecl136II GAGCTC 1 cut(s) 1053
Eco130I CCWWGG 1 cut(s) 375
Eco24I GRGCYC 1 cut(s) 1055
Eco47III AGCGCT 1 cut(s) 987
Eco53kI GAGCTC 1 cut(s) 1053
Eco57I CTGAAG 1 cut(s) 749
Eco88I CYCGRG 1 cut(s) 257
Eco91I GGTNACC 1 cut(s) 301
EcoICRI GAGCTC 1 cut(s) 1053
EcoO65I GGTNACC 1 cut(s) 301
EcoRI GAATTC 1 cut(s) 430
EcoRII CCWGG 1 cut(s) 324
EcoT14I CCWWGG 1 cut(s) 375
EcoT22I ATGCAT 1 cut(s) 1068
EcoT38I GRGCYC 1 cut(s) 1055
ErhI CCWWGG 1 cut(s) 375
FaeI CATG 3 cut(s) 234, 881, 1070
FaiI YATR 8 cut(s) 232, 266, 312, 343, 519, 879, 983, 1068
FaqI GGGAC 2 cut(s) 65, 348
FatI CATG 3 cut(s) 230, 877, 1066
FblI GTMKAC 1 cut(s) 9
Fnu4HI GCNGC 2 cut(s) 192, 411
FokI GGATG 2 cut(s) 983, 1005
FriOI GRGCYC 1 cut(s) 1055
Fsp4HI GCNGC 2 cut(s) 192, 411
FspBI CTAG 2 cut(s) 188, 201
FspI TGCGCA 1 cut(s) 665
GlaI GCGC 2 cut(s) 665, 987
GluI GCNGC 2 cut(s) 192, 411
GsuI CTGGAG 1 cut(s) 551
HaeII RGCGCY 1 cut(s) 989
HaeIII GGCC 2 cut(s) 63, 721
HapII CCGG 2 cut(s) 151, 176
HgaI GACGC 1 cut(s) 821
HhaI GCGC 2 cut(s) 666, 988
Hin1I GRCGYC 2 cut(s) 449, 813
Hin1II CATG 3 cut(s) 234, 881, 1070
Hin6I GCGC 2 cut(s) 664, 986
HinP1I GCGC 2 cut(s) 664, 986
HincII GTYRAC 1 cut(s) 198
HindII GTYRAC 1 cut(s) 198
HindIII AAGCTT 1 cut(s) 236
HinfI GANTC 3 cut(s) 135, 526, 1007
HpaII CCGG 2 cut(s) 151, 176
HphI GGTGA 2 cut(s) 295, 895
Hpy166II GTNNAC 5 cut(s) 10, 198, 220, 317, 537
Hpy188I TCNGA 8 cut(s) 112, 392, 484, 497, 771, 811, 970, 1057
Hpy188III TCNNGA 4 cut(s) 530, 607, 797, 878
Hpy8I GTNNAC 5 cut(s) 10, 198, 220, 317, 537
Hpy99I CGWCG 1 cut(s) 53
HpyAV CCTTC 1 cut(s) 134
HpyCH4III ACNGT 3 cut(s) 372, 443, 704
HpyCH4IV ACGT 2 cut(s) 78, 449
HpyCH4V TGCA 5 cut(s) 120, 549, 843, 905, 1066
HpyF10VI GCNNNNNNNGC 2 cut(s) 419, 761
HpyF3I CTNAG 6 cut(s) 44, 131, 214, 494, 808, 834
HpySE526I ACGT 2 cut(s) 78, 449
Hsp92I GRCGYC 2 cut(s) 449, 813
Hsp92II CATG 3 cut(s) 234, 881, 1070
HspAI GCGC 2 cut(s) 664, 986
Kzo9I GATC 7 cut(s) 484, 559, 636, 732, 756, 961, 1039
LmnI GCTCC 1 cut(s) 1050
Lsp1109I GCAGC 2 cut(s) 178, 397
LweI GCATC 4 cut(s) 813, 852, 983, 1053
MaeI CTAG 2 cut(s) 188, 201
MaeII ACGT 2 cut(s) 78, 449
MaeIII GTNAC 2 cut(s) 301, 914
MalI GATC 7 cut(s) 486, 561, 638, 734, 758, 963, 1041
MboI GATC 7 cut(s) 484, 559, 636, 732, 756, 961, 1039
MboII GAAGA 1 cut(s) 742
MfeI CAATTG 1 cut(s) 501
MflI RGATCY 2 cut(s) 484, 1039
MhlI GDGCHC 2 cut(s) 45, 1055
MlsI TGGCCA 1 cut(s) 721
MluNI TGGCCA 1 cut(s) 721
MlyI GAGTC 3 cut(s) 144, 520, 1016
Mox20I TGGCCA 1 cut(s) 721
Mph1103I ATGCAT 1 cut(s) 1068
MscI TGGCCA 1 cut(s) 721
MseI TTAA 1 cut(s) 866
Msp20I TGGCCA 1 cut(s) 721
MspI CCGG 2 cut(s) 151, 176
MspR9I CCNGG 1 cut(s) 326
MunI CAATTG 1 cut(s) 501
Mva1269I GAATGC 1 cut(s) 897
MvaI CCWGG 1 cut(s) 326
MwoI GCNNNNNNNGC 2 cut(s) 419, 761
NdeII GATC 7 cut(s) 484, 559, 636, 732, 756, 961, 1039
NlaIII CATG 3 cut(s) 234, 881, 1070
NlaIV GGNNCC 3 cut(s) 206, 486, 1041
NmuCI GTSAC 2 cut(s) 301, 914
NsbI TGCGCA 1 cut(s) 665
NsiI ATGCAT 1 cut(s) 1068
NspV TTCGAA 1 cut(s) 225
PaeR7I CTCGAG 1 cut(s) 257
PagI TCATGA 1 cut(s) 877
PctI GAATGC 1 cut(s) 897
PinAI ACCGGT 1 cut(s) 150
PkrI GCNGC 2 cut(s) 193, 412
PleI GAGTC 3 cut(s) 143, 520, 1015
PpsI GAGTC 3 cut(s) 143, 520, 1015
Psp124BI GAGCTC 1 cut(s) 1055
Psp6I CCWGG 1 cut(s) 324
PspEI GGTNACC 1 cut(s) 301
PspGI CCWGG 1 cut(s) 324
PspN4I GGNNCC 3 cut(s) 206, 486, 1041
PspXI VCTCGAGB 1 cut(s) 257
PsuI RGATCY 2 cut(s) 484, 1039
RsaI GTAC 1 cut(s) 492
RsaNI GTAC 1 cut(s) 491
SacI GAGCTC 1 cut(s) 1055
SaqAI TTAA 1 cut(s) 866
SatI GCNGC 2 cut(s) 192, 411
Sau3AI GATC 7 cut(s) 484, 559, 636, 732, 756, 961, 1039
ScaI AGTACT 1 cut(s) 492
SchI GAGTC 3 cut(s) 144, 520, 1016
ScrFI CCNGG 1 cut(s) 326
SduI GDGCHC 2 cut(s) 45, 1055
SfaNI GCATC 4 cut(s) 813, 852, 983, 1053
SfcI CTRYAG 1 cut(s) 6
Sfr274I CTCGAG 1 cut(s) 257
SfuI TTCGAA 1 cut(s) 225
SlaI CTCGAG 1 cut(s) 257
SmlI CTYRAG 6 cut(s) 257, 605, 620, 797, 1030, 1098
SmoI CTYRAG 6 cut(s) 257, 605, 620, 797, 1030, 1098
SsiI CCGC 3 cut(s) 281, 413, 1072
SspMI CTAG 2 cut(s) 188, 201
SstI GAGCTC 1 cut(s) 1055
StyD4I CCNGG 1 cut(s) 324
StyI CCWWGG 1 cut(s) 375
TaaI ACNGT 3 cut(s) 372, 443, 704
TaiI ACGT 2 cut(s) 81, 452
TaqI TCGA 4 cut(s) 138, 225, 258, 288
TaqII GACCGA 1 cut(s) 260
TatI WGTACW 1 cut(s) 490
Tru1I TTAA 1 cut(s) 866
Tru9I TTAA 1 cut(s) 866
TscAI CASTG 2 cut(s) 646, 742
TseFI GTSAC 2 cut(s) 301, 914
TseI GCWGC 2 cut(s) 191, 410
Tsp45I GTSAC 2 cut(s) 301, 914
TspDTI ATGAA 2 cut(s) 253, 466
TspRI CASTG 2 cut(s) 646, 742
XapI RAATTY 4 cut(s) 33, 180, 430, 458
XhoI CTCGAG 1 cut(s) 257
XmiI GTMKAC 1 cut(s) 9
XspI CTAG 2 cut(s) 188, 201
ZraI GACGTC 1 cut(s) 450
ZrmI AGTACT 1 cut(s) 492
Zsp2I ATGCAT 1 cut(s) 1068
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.