Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001041

Physical Location & Seq

Genomic Coordinates Forward (+)

6869360 .. 6870100

Gene Structure 741 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g12210.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGGTGTACACACCAAGAAGAAATCAGGGATATTTTCGTCATTAAGCGACGATTTACTTGGCCTAGTGATTAACAAGGTCAAGGACAAACGAGACAGAAAATCGTTTTCCGAGGTCTGCAAGCAATGGTTCAAAGTGGAAGGTCTAGACCGATCAAAGCTTATCCTTTATGTTAACGATCCCGGGTCTTCGCTTTCTGTACTAACTAGATTCCCAAATATTGTCACTTTGTGGCTGTTGGGTTGCAATACTCACCCCGACCTTGAATTCGTAGCTCAAACATGTCCCAGAATCGAGCGCATCATGATTGAATGTAGAGATGAGAAGCAAACAGGTGATGGTGGTGTTTTGAACCCCAAAGGTCTATGTGGTTTGGGAGAAGGGTGTCCCAGATTGTCCCATGTTGAGATCATGGGGCTAAATGCAATAGGGAATTCTGGAGTTGTTGAGCTTGTACATTCAGCACATAACTTGGAGTCCCTTGTTTTGCTAAACAATAAGTTGATATCAAATGAAGCCCTCAGAGGAATTGGGTCCGCATCTTCCATTAGCATTTTACAGCTAATACGTTGCGATAACGTTACTGATGAGGGATTGGCTTTTTTGGCGAATGGATCTACCTCAAAAACCCTCAAGAAATTGAACCTTGAGTGTTGCCCTAAAATTACTGATACTGGGGTCGACCTTTTGCGCAAAATGTGTAGCCTGGAGCATCTGAAAATTTCCGAGTCGAATCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_6

Protein Analysis

247

Amino Acids

26.91

Weight (kDa)

8.02

Isoelectric Point (pI)

31.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box_5	PF18511	14 - 52	2.2e-10	F-box
DUF7885	PF25372	120 - 243	6.4e-11	Leucine Rich Repeat Domain of unknown function (DUF7885)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001041)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40700 FvH4_5g10370 FvH4_5g12160 FvH4_5g12180 FvH4_5g12190 FvH4_5g12200 FvH4_5g12210 FvH4_5g12211
rosa_chinensis	RchiOBHm_Chr5g0073461 RchiOBHm_Chr5g0073471 RchiOBHm_Chr7g0185341 RchiOBHm_Chr7g0185381 RchiOBHm_Chr7g0185401
rosa_laevigata	RLG00000004916 RLG00000004917 RLG00000004921 RLG00000019401 RLG00000036387
rosa_multiflora	Rmu_co8366929.1_g000001 Rmu_co8392105.1_g000001 Rmu_sc0001761.1_g000011 Rmu_sc0001761.1_g000012 Rmu_sc0001761.1_g000013 Rmu_sc0001761.1_g000016 Rmu_sc0004670.1_g000010 Rmu_sc0008496.1_g000005 Rmu_sc0023242.1_g000005 Rmu_sc0023242.1_g000006 Rmu_ssc0000226.1_g000026 Rmu_ssc0000226.1_g000027
rosa_roxburghii	Rroxscaffold_1G00007790 Rroxscaffold_1G00017220 Rroxscaffold_2G00110040 Rroxscaffold_3G00269000 Rroxscaffold_3G00269010
rosa_rugosa	Rorug05G0423700 Rorug06G0468100 Rorug06G0468700
rosa_samantha	Rh2CG354600 Rh2CG354700 Rh2DG393800 Rh5AG481000 Rh5CG455400 Rh5CG524900 Rh5DG514100 Rh7AG074000 Rh7AG074100 Rh7AG074200 Rh7AG074600 Rh7BG072600 Rh7BG073200 Rh7BG073300 Rh7BG073400 Rh7DG073200 Rh7DG073600 Rh7DG073700 Rh7DG073800
rosa_wichuraiana	Rw2G030200 Rw7G006080 Rw7G006120 Rw7G006130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	692
AccI	GTMKAC	1 cut(s)	681
AciI	CCGC	1 cut(s)	537
AclI	AACGTT	1 cut(s)	579
AclWI	GGATC	2 cut(s)	173, 622
AcsI	RAATTY	3 cut(s)	266, 433, 720
AdeI	CACNNNGTG	1 cut(s)	231
AfaI	GTAC	3 cut(s)	9, 201, 456
AflIII	ACRYGT	1 cut(s)	281
AgsI	TTSAA	5 cut(s)	133, 266, 311, 352, 643
AjnI	CCWGG	1 cut(s)	705
AluBI	AGCT	4 cut(s)	160, 275, 451, 562
AluI	AGCT	4 cut(s)	160, 275, 451, 562
Alw26I	GTCTC	1 cut(s)	87
AlwI	GGATC	2 cut(s)	173, 622
Ama87I	CYCGRG	1 cut(s)	182
AoxI	GGCC	1 cut(s)	61
ApoI	RAATTY	3 cut(s)	266, 433, 720
ArsI	GACNNNNNNTTYG	2 cut(s)	251, 283
AspLEI	GCGC	2 cut(s)	300, 693
AspS9I	GGNCC	1 cut(s)	534
AsuC2I	CCSGG	2 cut(s)	183, 184
AsuHPI	GGTGA	2 cut(s)	245, 347
AvaI	CYCGRG	1 cut(s)	182
AvaII	GGWCC	1 cut(s)	534
BaeI	ACNNNNGTAYC	2 cut(s)	663, 696
BbsI	GAAGAC	1 cut(s)	180
BccI	CCATC	1 cut(s)	332
BciT130I	CCWGG	1 cut(s)	707
BcnI	CCSGG	2 cut(s)	183, 184
BcoDI	GTCTC	1 cut(s)	87
BfaI	CTAG	3 cut(s)	65, 146, 207
Bme1390I	CCNGG	3 cut(s)	183, 184, 707
Bme18I	GGWCC	1 cut(s)	534
BmeT110I	CYCGRG	1 cut(s)	182
BmgT120I	GGNCC	1 cut(s)	534
BmiI	GGNNCC	1 cut(s)	535
BmrFI	CCNGG	3 cut(s)	183, 184, 707
BmrI	ACTGGG	1 cut(s)	684
BmsI	GCATC	3 cut(s)	309, 548, 721
BmuI	ACTGGG	1 cut(s)	684
BpiI	GAAGAC	1 cut(s)	180
BpmI	CTGGAG	2 cut(s)	459, 728
BpuEI	CTTGAG	2 cut(s)	617, 668
BpuMI	CCSGG	2 cut(s)	183, 184
BsaJI	CCNNGG	2 cut(s)	111, 182
Bse1I	ACTGG	1 cut(s)	679
Bse3DI	GCAATG	1 cut(s)	131
BseBI	CCWGG	1 cut(s)	707
BseDI	CCNNGG	2 cut(s)	111, 182
BseMI	GCAATG	1 cut(s)	131
BseMII	CTCAG	1 cut(s)	535
BseNI	ACTGG	1 cut(s)	679
BshFI	GGCC	1 cut(s)	63
BsiHKCI	CYCGRG	1 cut(s)	182
BsiSI	CCGG	1 cut(s)	183
BslFI	GGGAC	4 cut(s)	270, 372, 382, 463
BsmAI	GTCTC	1 cut(s)	87
BsmFI	GGGAC	4 cut(s)	270, 372, 382, 463
BsnI	GGCC	1 cut(s)	63
BsoBI	CYCGRG	1 cut(s)	182
Bsp1407I	TGTACA	2 cut(s)	7, 454
Bsp143I	GATC	4 cut(s)	152, 178, 408, 614
BspACI	CCGC	1 cut(s)	537
BspANI	GGCC	1 cut(s)	63
BspCNI	CTCAG	1 cut(s)	534
BspHI	TCATGA	1 cut(s)	303
BspLI	GGNNCC	1 cut(s)	535
BspPI	GGATC	2 cut(s)	173, 622
BsrDI	GCAATG	1 cut(s)	131
BsrGI	TGTACA	2 cut(s)	7, 454
BsrI	ACTGG	1 cut(s)	679
BssECI	CCNNGG	2 cut(s)	111, 182
BssMI	GATC	4 cut(s)	152, 178, 408, 614
Bst2UI	CCWGG	1 cut(s)	707
BstAUI	TGTACA	2 cut(s)	7, 454
BstC8I	GCNNGC	1 cut(s)	122
BstDEI	CTNAG	1 cut(s)	521
BstHHI	GCGC	2 cut(s)	300, 693
BstKTI	GATC	4 cut(s)	155, 181, 411, 617
BstMAI	GTCTC	1 cut(s)	87
BstMBI	GATC	4 cut(s)	152, 178, 408, 614
BstMWI	GCNNNNNNNGC	1 cut(s)	605
BstNI	CCWGG	1 cut(s)	707
BstNSI	RCATGY	1 cut(s)	285
BstSCI	CCNGG	3 cut(s)	181, 182, 705
BstV2I	GAAGAC	1 cut(s)	180
BstX2I	RGATCY	1 cut(s)	614
BstYI	RGATCY	1 cut(s)	614
BsuRI	GGCC	1 cut(s)	63
BtsIMutI	CAGTG	1 cut(s)	736
Cac8I	GCNNGC	1 cut(s)	122
CciI	TCATGA	1 cut(s)	303
CfoI	GCGC	2 cut(s)	300, 693
Cfr13I	GGNCC	1 cut(s)	534
Cfr9I	CCCGGG	1 cut(s)	182
Csp6I	GTAC	3 cut(s)	8, 200, 455
CviAII	CATG	4 cut(s)	282, 304, 401, 412
CviQI	GTAC	3 cut(s)	8, 200, 455
DdeI	CTNAG	1 cut(s)	521
DpnI	GATC	4 cut(s)	154, 180, 410, 616
DpnII	GATC	4 cut(s)	152, 178, 408, 614
DraIII	CACNNNGTG	1 cut(s)	231
Eco32I	GATATC	1 cut(s)	507
Eco47I	GGWCC	1 cut(s)	534
Eco88I	CYCGRG	1 cut(s)	182
EcoRI	GAATTC	2 cut(s)	266, 433
EcoRII	CCWGG	1 cut(s)	705
EcoRV	GATATC	1 cut(s)	507
FaeI	CATG	4 cut(s)	285, 307, 404, 415
FaiI	YATR	7 cut(s)	171, 283, 305, 367, 402, 413, 468
FaqI	GGGAC	4 cut(s)	270, 372, 382, 463
FatI	CATG	4 cut(s)	281, 303, 400, 411
FblI	GTMKAC	1 cut(s)	681
FspBI	CTAG	3 cut(s)	65, 146, 207
FspI	TGCGCA	1 cut(s)	692
GlaI	GCGC	2 cut(s)	299, 692
GsuI	CTGGAG	2 cut(s)	459, 728
HaeIII	GGCC	1 cut(s)	63
HapII	CCGG	1 cut(s)	183
HhaI	GCGC	2 cut(s)	300, 693
Hin1II	CATG	4 cut(s)	285, 307, 404, 415
Hin6I	GCGC	2 cut(s)	298, 691
HinP1I	GCGC	2 cut(s)	298, 691
HincII	GTYRAC	2 cut(s)	175, 682
HindII	GTYRAC	2 cut(s)	175, 682
HindIII	AAGCTT	1 cut(s)	158
HinfI	GANTC	5 cut(s)	210, 291, 476, 728, 733
HpaI	GTTAAC	1 cut(s)	175
HpaII	CCGG	1 cut(s)	183
HphI	GGTGA	2 cut(s)	245, 347
Hpy166II	GTNNAC	4 cut(s)	8, 10, 175, 682
Hpy188I	TCNGA	4 cut(s)	112, 524, 717, 727
Hpy188III	TCNNGA	4 cut(s)	146, 304, 438, 634
Hpy8I	GTNNAC	4 cut(s)	8, 10, 175, 682
Hpy99I	CGWCG	1 cut(s)	53
HpyAV	CCTTC	2 cut(s)	134, 374
HpyCH4IV	ACGT	2 cut(s)	568, 579
HpyCH4V	TGCA	3 cut(s)	120, 246, 425
HpyF10VI	GCNNNNNNNGC	1 cut(s)	605
HpyF3I	CTNAG	1 cut(s)	521
HpySE526I	ACGT	2 cut(s)	568, 579
Hsp92II	CATG	4 cut(s)	285, 307, 404, 415
HspAI	GCGC	2 cut(s)	298, 691
KspAI	GTTAAC	1 cut(s)	175
Kzo9I	GATC	4 cut(s)	152, 178, 408, 614
LmnI	GCTCC	1 cut(s)	709
LpnPI	CCDG	9 cut(s)	12, 196, 301, 318, 403, 423, 660, 692, 719
LweI	GCATC	3 cut(s)	309, 548, 721
MaeI	CTAG	3 cut(s)	65, 146, 207
MaeII	ACGT	2 cut(s)	568, 579
MaeIII	GTNAC	2 cut(s)	223, 580
MalI	GATC	4 cut(s)	154, 180, 410, 616
MboI	GATC	4 cut(s)	152, 178, 408, 614
MboII	GAAGA	3 cut(s)	31, 180, 534
MflI	RGATCY	1 cut(s)	614
MluCI	AATT	6 cut(s)	266, 433, 528, 638, 663, 720
MlyI	GAGTC	2 cut(s)	485, 737
MnlI	CCTC	6 cut(s)	106, 518, 530, 583, 631, 641
MseI	TTAA	3 cut(s)	44, 72, 174
MspI	CCGG	1 cut(s)	183
MspR9I	CCNGG	3 cut(s)	183, 184, 707
MvaI	CCWGG	1 cut(s)	707
MwoI	GCNNNNNNNGC	1 cut(s)	605
NciI	CCSGG	2 cut(s)	183, 184
NdeII	GATC	4 cut(s)	152, 178, 408, 614
NlaIII	CATG	4 cut(s)	285, 307, 404, 415
NlaIV	GGNNCC	1 cut(s)	535
NmuCI	GTSAC	1 cut(s)	223
NsbI	TGCGCA	1 cut(s)	692
NspI	RCATGY	1 cut(s)	285
PagI	TCATGA	1 cut(s)	303
PciI	ACATGT	1 cut(s)	281
PfeI	GAWTC	3 cut(s)	210, 291, 733
PleI	GAGTC	2 cut(s)	484, 736
PpsI	GAGTC	2 cut(s)	484, 736
PscI	ACATGT	1 cut(s)	281
Psp1406I	AACGTT	1 cut(s)	579
Psp6I	CCWGG	1 cut(s)	705
PspGI	CCWGG	1 cut(s)	705
PspN4I	GGNNCC	1 cut(s)	535
PspPI	GGNCC	1 cut(s)	534
PsuI	RGATCY	1 cut(s)	614
RsaI	GTAC	3 cut(s)	9, 201, 456
RsaNI	GTAC	3 cut(s)	8, 200, 455
SalI	GTCGAC	1 cut(s)	680
SaqAI	TTAA	3 cut(s)	44, 72, 174
Sau3AI	GATC	4 cut(s)	152, 178, 408, 614
Sau96I	GGNCC	1 cut(s)	534
SchI	GAGTC	2 cut(s)	485, 737
ScrFI	CCNGG	3 cut(s)	183, 184, 707
SfaNI	GCATC	3 cut(s)	309, 548, 721
SinI	GGWCC	1 cut(s)	534
SmaI	CCCGGG	1 cut(s)	184
SmlI	CTYRAG	2 cut(s)	632, 647
SmoI	CTYRAG	2 cut(s)	632, 647
Sse9I	AATT	6 cut(s)	266, 433, 528, 638, 663, 720
SsiI	CCGC	1 cut(s)	537
SspI	AATATT	1 cut(s)	220
SspMI	CTAG	3 cut(s)	65, 146, 207
StyD4I	CCNGG	3 cut(s)	181, 182, 705
TaiI	ACGT	2 cut(s)	571, 582
TaqI	TCGA	3 cut(s)	294, 681, 731
TaqII	GACCGA	1 cut(s)	165
TasI	AATT	6 cut(s)	266, 433, 528, 638, 663, 720
TatI	WGTACW	3 cut(s)	7, 199, 454
TfiI	GAWTC	3 cut(s)	210, 291, 733
Tru1I	TTAA	3 cut(s)	44, 72, 174
Tru9I	TTAA	3 cut(s)	44, 72, 174
TseFI	GTSAC	1 cut(s)	223
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	1 cut(s)	528
TspMI	CCCGGG	1 cut(s)	182
VpaK11BI	GGWCC	1 cut(s)	534
XapI	RAATTY	3 cut(s)	266, 433, 720
XbaI	TCTAGA	1 cut(s)	145
XceI	RCATGY	1 cut(s)	285
XmaI	CCCGGG	1 cut(s)	182
XmiI	GTMKAC	1 cut(s)	681
XspI	CTAG	3 cut(s)	65, 146, 207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.