Rh7DG073800

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0001041
Physical Location & Seq
Reverse (-)
5687015 .. 5688118
1104 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG073800.1

Sequence Viewer

Length: 1104 bp
ATGGCCGCGCACACCCGAATAGCAGGGCCAATTACTCTGCTGTCCGAAGATTTAGTTGCCTTAATCCTTAACAAGGTGACCGACCTAGACGATAGAAACTCGTGCTCCGAGGTTTGCCAGCTATGGTTAAAAGTCGAAGGTATAAGCCGATCATCACTCTTCGTTCGCAAACCCGGGTTTCCTCTAACTATACTGAACAGGTTCCCGAATTTAGTCCAATTCCAAACCACCCAGCTCACCACCGACTCCGACCTCGAGTTCATCGCCCGAACATGTCCCAAAATCGAGGACTTCAAGGTCGCCGACTTCACTTCACCCGAAGAAGGTTTCTTGGGTCGAAATGGCCTGTCGGCTTTGGCATGTGGGTGTCCCAAATTGTCCAAGGTGTCGCTGATCGGGGACAAGATTGGGAATGCCGGAGTTGTGGAGCTTGTGAATTCTGCCCGGAGTTTGTCGTCTTTGGAATTGGGACATGACCTGATCGGGGACCCGGCTCTCAGAGCAATCGCTTCGTCTTCGATTACGGTTCTCAAGTTGAAGAGCTGCTGCAATGTTACCGATCACGGATTGGGTTGTTTGGCAACTGGGTCTACCTCGAAAACGCTCAGGAAATTGGTGCTGAAGATGTGTGGTAAGATCACTGATGATGGGTTGAAGGATTTGAAGAAAATGCGGAGCTTGGAGGAGCTGACTTTGTCTTGGTGTCAGGGAGAAATAACAGATGTTGGAGGTATGGCAATCTCTGCCATTCGAAATCTTAAAGAATTGAAATTGAATGCTCTTTACGGCTTGTCAGACCTTACCGTTTCTGCTCTCGCATTTTGCAAAAAGTTGCAAGTACTTGATTTAAGCGGTTGTGAAGGGGTGACCGGACCCGGCATTCGTGCATTTTCAAGTCATCAAGGCTTGAGACGCCTCGTGTTGCTCGGTTTGAGGAATCTTCGTCTTGCTGATCTAGAAAGCCTGGCGCTTGGATGCTCGTCGTTGGAGGCTCAATCTGTTGTGGTGGATGAGAGTTGGAGGCAGCATCCGACTTGGAGCGATGAGTTGATGCATGAGAACACTAGAAGAGTTCTCAAGTTCTCTGGATATAGTTATCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

367

Amino Acids

39.86

Weight (kDa)

7.92

Isoelectric Point (pI)

36.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 296
AccI GTMKAC 1 cut(s) 590
AccII CGCG 1 cut(s) 8
AciI CCGC 3 cut(s) 6, 673, 852
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 208, 436
AcuI CTGAAG 1 cut(s) 641
AcyI GRCGYC 1 cut(s) 913
AfaI GTAC 1 cut(s) 840
AfiI CCNNNNNNNGG 3 cut(s) 73, 323, 484
AflIII ACRYGT 1 cut(s) 272
AgsI TTSAA 7 cut(s) 295, 538, 655, 664, 769, 775, 894
AjnI CCWGG 1 cut(s) 963
AluBI AGCT 6 cut(s) 121, 235, 430, 543, 678, 688
AluI AGCT 6 cut(s) 121, 235, 430, 543, 678, 688
Alw21I GWGCWC 1 cut(s) 107
Alw26I GTCTC 1 cut(s) 904
Ama87I CYCGRG 2 cut(s) 173, 254
AoxI GGCC 3 cut(s) 3, 26, 343
ApeKI GCWGC 3 cut(s) 543, 546, 1024
ApoI RAATTY 2 cut(s) 208, 436
ArsI GACNNNNNNTTYG 2 cut(s) 864, 896
Asp700I GAANNNNTTC 1 cut(s) 200
AspLEI GCGC 2 cut(s) 10, 970
AspS9I GGNCC 3 cut(s) 26, 487, 872
AsuC2I CCSGG 5 cut(s) 174, 175, 445, 491, 876
AsuHPI GGTGA 4 cut(s) 88, 229, 306, 877
AsuII TTCGAA 1 cut(s) 751
AvaI CYCGRG 2 cut(s) 173, 254
AvaII GGWCC 2 cut(s) 487, 872
BauI CACGAG 2 cut(s) 100, 917
BbsI GAAGAC 1 cut(s) 507
Bbv12I GWGCWC 1 cut(s) 107
BbvI GCAGC 3 cut(s) 530, 533, 1036
BccI CCATC 1 cut(s) 641
BceAI ACGGC 1 cut(s) 802
BcgI CGANNNNNNTGC 2 cut(s) 492, 526
BciT130I CCWGG 1 cut(s) 965
BcnI CCSGG 5 cut(s) 174, 175, 445, 491, 876
BcoDI GTCTC 1 cut(s) 904
BfaI CTAG 4 cut(s) 86, 956, 1065, 1102
BfoI RGCGCY 1 cut(s) 971
BisI GCNGC 4 cut(s) 6, 544, 547, 1025
BlsI GCNGC 4 cut(s) 7, 545, 548, 1026
BmcAI AGTACT 1 cut(s) 840
Bme1390I CCNGG 6 cut(s) 174, 175, 445, 491, 876, 965
Bme18I GGWCC 2 cut(s) 487, 872
BmeT110I CYCGRG 2 cut(s) 173, 254
BmgT120I GGNCC 3 cut(s) 26, 487, 872
BmiI GGNNCC 4 cut(s) 203, 488, 489, 874
BmrFI CCNGG 6 cut(s) 174, 175, 445, 491, 876, 965
BmrI ACTGGG 1 cut(s) 594
BmsI GCATC 3 cut(s) 965, 1036, 1041
BmuI ACTGGG 1 cut(s) 594
BpiI GAAGAC 1 cut(s) 507
Bpu10I CCTNAGC 1 cut(s) 605
Bpu14I TTCGAA 1 cut(s) 751
BpuEI CTTGAG 3 cut(s) 515, 928, 1061
BpuMI CCSGG 5 cut(s) 174, 175, 445, 491, 876
BsaHI GRCGYC 1 cut(s) 913
BsaJI CCNNGG 3 cut(s) 108, 173, 381
BsaWI WCCGGW 1 cut(s) 869
BsaXI ACNNNNNCTCC 2 cut(s) 89, 119
Bsc4I CCNNNNNNNGG 3 cut(s) 73, 323, 484
Bse1I ACTGG 1 cut(s) 589
Bse3DI GCAATG 1 cut(s) 556
BseBI CCWGG 1 cut(s) 965
BseDI CCNNGG 3 cut(s) 108, 173, 381
BseGI GGATG 3 cut(s) 980, 1015, 1027
BseLI CCNNNNNNNGG 3 cut(s) 73, 323, 484
BseMI GCAATG 1 cut(s) 556
BseMII CTCAG 2 cut(s) 511, 619
BseNI ACTGG 1 cut(s) 589
BseRI GAGGAG 1 cut(s) 698
BseXI GCAGC 3 cut(s) 530, 533, 1036
BseYI CCCAGC 1 cut(s) 231
Bsh1236I CGCG 1 cut(s) 8
BshFI GGCC 3 cut(s) 5, 28, 345
BsiHKAI GWGCWC 1 cut(s) 107
BsiHKCI CYCGRG 2 cut(s) 173, 254
BsiSI CCGG 6 cut(s) 174, 417, 445, 491, 870, 876
BslFI GGGAC 5 cut(s) 261, 354, 413, 483, 500
BslI CCNNNNNNNGG 3 cut(s) 73, 323, 484
BsmAI GTCTC 1 cut(s) 904
BsmBI CGTCTC 1 cut(s) 904
BsmFI GGGAC 5 cut(s) 261, 354, 413, 483, 500
BsmI GAATGC 3 cut(s) 418, 781, 879
BsnI GGCC 3 cut(s) 5, 28, 345
BsoBI CYCGRG 2 cut(s) 173, 254
Bsp119I TTCGAA 1 cut(s) 751
Bsp1286I GDGCHC 1 cut(s) 107
Bsp143I GATC 6 cut(s) 149, 393, 480, 559, 636, 952
BspACI CCGC 3 cut(s) 6, 673, 852
BspANI GGCC 3 cut(s) 5, 28, 345
BspCNI CTCAG 2 cut(s) 510, 618
BspFNI CGCG 1 cut(s) 8
BspLI GGNNCC 4 cut(s) 203, 488, 489, 874
BspQI GCTCTTC 1 cut(s) 533
BspT104I TTCGAA 1 cut(s) 751
BsrDI GCAATG 1 cut(s) 556
BsrI ACTGG 1 cut(s) 589
BssECI CCNNGG 3 cut(s) 108, 173, 381
BssMI GATC 6 cut(s) 149, 393, 480, 559, 636, 952
BssNI GRCGYC 1 cut(s) 913
BssSI CACGAG 2 cut(s) 100, 917
BssT1I CCWWGG 1 cut(s) 381
Bst2BI CACGAG 2 cut(s) 100, 917
Bst2UI CCWGG 1 cut(s) 965
Bst4CI ACNGT 2 cut(s) 526, 805
Bst6I CTCTTC 3 cut(s) 164, 533, 1063
BstACI GRCGYC 1 cut(s) 913
BstAPI GCANNNNNTGC 1 cut(s) 743
BstBI TTCGAA 1 cut(s) 751
BstC8I GCNNGC 1 cut(s) 119
BstDEI CTNAG 2 cut(s) 497, 605
BstEII GGTNACC 2 cut(s) 76, 865
BstENI CCTNNNNNAGG 1 cut(s) 71
BstF5I GGATG 3 cut(s) 980, 1015, 1027
BstFNI CGCG 1 cut(s) 8
BstH2I RGCGCY 1 cut(s) 971
BstHHI GCGC 2 cut(s) 10, 970
BstKTI GATC 6 cut(s) 152, 396, 483, 562, 639, 955
BstMAI GTCTC 1 cut(s) 904
BstMBI GATC 6 cut(s) 149, 393, 480, 559, 636, 952
BstMWI GCNNNNNNNGC 3 cut(s) 500, 743, 912
BstNI CCWGG 1 cut(s) 965
BstNSI RCATGY 2 cut(s) 276, 363
BstPI GGTNACC 2 cut(s) 76, 865
BstSCI CCNGG 6 cut(s) 172, 173, 443, 489, 874, 963
BstUI CGCG 1 cut(s) 8
BstV1I GCAGC 3 cut(s) 530, 533, 1036
BstV2I GAAGAC 1 cut(s) 507
BsuRI GGCC 3 cut(s) 5, 28, 345
BtgZI GCGATG 2 cut(s) 247, 1056
BtsCI GGATG 3 cut(s) 980, 1015, 1027
BtsIMutI CAGTG 1 cut(s) 639
Cac8I GCNNGC 1 cut(s) 119
CfoI GCGC 2 cut(s) 10, 970
Cfr13I GGNCC 3 cut(s) 26, 487, 872
Cfr9I CCCGGG 1 cut(s) 173
CseI GACGC 1 cut(s) 921
Csp6I GTAC 1 cut(s) 839
CviAII CATG 4 cut(s) 273, 360, 473, 1055
CviQI GTAC 1 cut(s) 839
DdeI CTNAG 2 cut(s) 497, 605
DpnI GATC 6 cut(s) 151, 395, 482, 561, 638, 954
DpnII GATC 6 cut(s) 149, 393, 480, 559, 636, 952
DrdI GACNNNNNNGTC 1 cut(s) 296
DseDI GACNNNNNNGTC 1 cut(s) 296
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 164, 533, 1063
EarI CTCTTC 3 cut(s) 164, 533, 1063
Eco130I CCWWGG 1 cut(s) 381
Eco47I GGWCC 2 cut(s) 487, 872
Eco57I CTGAAG 1 cut(s) 641
Eco88I CYCGRG 2 cut(s) 173, 254
Eco91I GGTNACC 2 cut(s) 76, 865
EcoNI CCTNNNNNAGG 1 cut(s) 71
EcoO109I RGGNCCY 1 cut(s) 487
EcoO65I GGTNACC 2 cut(s) 76, 865
EcoRI GAATTC 1 cut(s) 436
EcoRII CCWGG 1 cut(s) 963
EcoT14I CCWWGG 1 cut(s) 381
EcoT22I ATGCAT 1 cut(s) 1056
ErhI CCWWGG 1 cut(s) 381
Esp3I CGTCTC 1 cut(s) 904
FaeI CATG 4 cut(s) 276, 363, 476, 1058
FaiI YATR 9 cut(s) 124, 143, 191, 274, 361, 474, 734, 1056, 1092
FaqI GGGAC 5 cut(s) 261, 354, 413, 483, 500
FatI CATG 4 cut(s) 272, 359, 472, 1054
FblI GTMKAC 1 cut(s) 590
Fnu4HI GCNGC 4 cut(s) 6, 544, 547, 1025
FokI GGATG 3 cut(s) 987, 1014, 1022
Fsp4HI GCNGC 4 cut(s) 6, 544, 547, 1025
FspBI CTAG 4 cut(s) 86, 956, 1065, 1102
GlaI GCGC 2 cut(s) 9, 969
GluI GCNGC 4 cut(s) 6, 544, 547, 1025
GsaI CCCAGC 1 cut(s) 235
HaeII RGCGCY 1 cut(s) 971
HaeIII GGCC 3 cut(s) 5, 28, 345
HapII CCGG 6 cut(s) 174, 417, 445, 491, 870, 876
HgaI GACGC 1 cut(s) 921
HhaI GCGC 2 cut(s) 10, 970
Hin1I GRCGYC 1 cut(s) 913
Hin1II CATG 4 cut(s) 276, 363, 476, 1058
Hin6I GCGC 2 cut(s) 8, 968
HinP1I GCGC 2 cut(s) 8, 968
HinfI GANTC 2 cut(s) 245, 937
HpaII CCGG 6 cut(s) 174, 417, 445, 491, 870, 876
HphI GGTGA 4 cut(s) 88, 229, 306, 877
Hpy166II GTNNAC 1 cut(s) 591
Hpy188I TCNGA 6 cut(s) 46, 109, 250, 500, 796, 1032
Hpy188III TCNNGA 4 cut(s) 205, 607, 956, 1086
Hpy8I GTNNAC 1 cut(s) 591
Hpy99I CGWCG 1 cut(s) 985
HpyAV CCTTC 4 cut(s) 131, 317, 649, 854
HpyCH4III ACNGT 2 cut(s) 526, 805
HpyCH4V TGCA 5 cut(s) 549, 825, 835, 887, 1054
HpyF10VI GCNNNNNNNGC 3 cut(s) 500, 743, 912
HpyF3I CTNAG 2 cut(s) 497, 605
Hsp92I GRCGYC 1 cut(s) 913
Hsp92II CATG 4 cut(s) 276, 363, 476, 1058
HspAI GCGC 2 cut(s) 8, 968
KflI GGGWCCC 1 cut(s) 487
Kzo9I GATC 6 cut(s) 149, 393, 480, 559, 636, 952
LguI GCTCTTC 1 cut(s) 533
LmnI GCTCC 5 cut(s) 110, 427, 675, 685, 1038
Lsp1109I GCAGC 3 cut(s) 530, 533, 1036
LweI GCATC 3 cut(s) 965, 1036, 1041
MaeI CTAG 4 cut(s) 86, 956, 1065, 1102
MaeIII GTNAC 3 cut(s) 76, 553, 865
MalI GATC 6 cut(s) 151, 395, 482, 561, 638, 954
MboI GATC 6 cut(s) 149, 393, 480, 559, 636, 952
MboII GAAGA 9 cut(s) 59, 151, 332, 507, 550, 634, 676, 932, 1080
MhlI GDGCHC 1 cut(s) 107
MluCI AATT 9 cut(s) 30, 208, 218, 374, 436, 464, 611, 764, 770
MlyI GAGTC 1 cut(s) 239
MmeI TCCRAC 5 cut(s) 273, 706, 966, 998, 1055
Mph1103I ATGCAT 1 cut(s) 1056
MroXI GAANNNNTTC 1 cut(s) 200
MseI TTAA 5 cut(s) 62, 69, 128, 759, 848
MslI CAYNNNNRTG 1 cut(s) 364
MspI CCGG 6 cut(s) 174, 417, 445, 491, 870, 876
MspR9I CCNGG 6 cut(s) 174, 175, 445, 491, 876, 965
Mva1269I GAATGC 3 cut(s) 418, 781, 879
MvaI CCWGG 1 cut(s) 965
MvnI CGCG 1 cut(s) 8
MwoI GCNNNNNNNGC 3 cut(s) 500, 743, 912
NciI CCSGG 5 cut(s) 174, 175, 445, 491, 876
NdeII GATC 6 cut(s) 149, 393, 480, 559, 636, 952
NlaIII CATG 4 cut(s) 276, 363, 476, 1058
NlaIV GGNNCC 4 cut(s) 203, 488, 489, 874
NmuCI GTSAC 2 cut(s) 76, 865
NsiI ATGCAT 1 cut(s) 1056
NspI RCATGY 2 cut(s) 276, 363
NspV TTCGAA 1 cut(s) 751
PaeR7I CTCGAG 1 cut(s) 254
PciI ACATGT 1 cut(s) 272
PciSI GCTCTTC 1 cut(s) 533
PctI GAATGC 3 cut(s) 418, 781, 879
PdmI GAANNNNTTC 1 cut(s) 200
PfeI GAWTC 1 cut(s) 937
PflFI GACNNNGTC 1 cut(s) 694
PkrI GCNGC 4 cut(s) 7, 545, 548, 1026
PleI GAGTC 1 cut(s) 239
PpsI GAGTC 1 cut(s) 239
PpuMI RGGWCCY 1 cut(s) 487
PscI ACATGT 1 cut(s) 272
Psp5II RGGWCCY 1 cut(s) 487
Psp6I CCWGG 1 cut(s) 963
PspEI GGTNACC 2 cut(s) 76, 865
PspFI CCCAGC 1 cut(s) 231
PspGI CCWGG 1 cut(s) 963
PspN4I GGNNCC 4 cut(s) 203, 488, 489, 874
PspPI GGNCC 3 cut(s) 26, 487, 872
PspPPI RGGWCCY 1 cut(s) 487
PspXI VCTCGAGB 1 cut(s) 254
PsyI GACNNNGTC 1 cut(s) 694
RsaI GTAC 1 cut(s) 840
RsaNI GTAC 1 cut(s) 839
RseI CAYNNNNRTG 1 cut(s) 364
SapI GCTCTTC 1 cut(s) 533
SaqAI TTAA 5 cut(s) 62, 69, 128, 759, 848
SatI GCNGC 4 cut(s) 6, 544, 547, 1025
Sau3AI GATC 6 cut(s) 149, 393, 480, 559, 636, 952
Sau96I GGNCC 3 cut(s) 26, 487, 872
ScaI AGTACT 1 cut(s) 840
SchI GAGTC 1 cut(s) 239
ScrFI CCNGG 6 cut(s) 174, 175, 445, 491, 876, 965
SduI GDGCHC 1 cut(s) 107
SfaNI GCATC 3 cut(s) 965, 1036, 1041
Sfr274I CTCGAG 1 cut(s) 254
SfuI TTCGAA 1 cut(s) 751
SinI GGWCC 2 cut(s) 487, 872
SlaI CTCGAG 1 cut(s) 254
SmaI CCCGGG 1 cut(s) 175
SmiMI CAYNNNNRTG 1 cut(s) 364
SmlI CTYRAG 4 cut(s) 254, 530, 907, 1076
SmoI CTYRAG 4 cut(s) 254, 530, 907, 1076
Sse9I AATT 9 cut(s) 30, 208, 218, 374, 436, 464, 611, 764, 770
SsiI CCGC 3 cut(s) 6, 673, 852
SspMI CTAG 4 cut(s) 86, 956, 1065, 1102
StyD4I CCNGG 6 cut(s) 172, 173, 443, 489, 874, 963
StyI CCWWGG 1 cut(s) 381
TaaI ACNGT 2 cut(s) 526, 805
TaqI TCGA 7 cut(s) 135, 255, 285, 337, 518, 596, 751
TaqII GACCGA 1 cut(s) 95
TasI AATT 9 cut(s) 30, 208, 218, 374, 436, 464, 611, 764, 770
TatI WGTACW 1 cut(s) 838
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 1 cut(s) 937
Tru1I TTAA 5 cut(s) 62, 69, 128, 759, 848
Tru9I TTAA 5 cut(s) 62, 69, 128, 759, 848
TscAI CASTG 1 cut(s) 646
TseFI GTSAC 2 cut(s) 76, 865
TseI GCWGC 3 cut(s) 543, 546, 1024
Tsp45I GTSAC 2 cut(s) 76, 865
TspDTI ATGAA 1 cut(s) 250
TspGWI ACGGA 1 cut(s) 579
TspMI CCCGGG 1 cut(s) 173
TspRI CASTG 1 cut(s) 646
Tth111I GACNNNGTC 1 cut(s) 694
VpaK11BI GGWCC 2 cut(s) 487, 872
XagI CCTNNNNNAGG 1 cut(s) 71
XapI RAATTY 2 cut(s) 208, 436
XbaI TCTAGA 1 cut(s) 955
XceI RCATGY 2 cut(s) 276, 363
XhoI CTCGAG 1 cut(s) 254
XmaI CCCGGG 1 cut(s) 173
XmiI GTMKAC 1 cut(s) 590
XmnI GAANNNNTTC 1 cut(s) 200
XspI CTAG 4 cut(s) 86, 956, 1065, 1102
ZrmI AGTACT 1 cut(s) 840
Zsp2I ATGCAT 1 cut(s) 1056
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.