RchiOBHm_Chr5g0073461

F-box LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
79476960 .. 79477409
450 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34834

Sequence Viewer

Length: 324 bp
ATGTCAAATAGTACCATGGTTGCTCTTGCAGAGAACTGCCTTAACTTGGAAATACTTGATTTTTGGGACTGTAAAGCTGTAACAGGAGCTGGCATTTGTGCATTTTCAGGTCATAAGTGTTTGAAACGCCTTGTATTGCTTAACTTACCCTATCACAATTTCGATGAAACTGATTTGGACAGCATAGCCCTTGGACTCCCGTCATTGGAGTCGGAATCAGTTCTGGTGAACGATAGGATTGAATTGGTGCACTACAGAACTAGAAGAGTCGTCAAGTTCATTGATATCTTCATGCAGTCCTTCAGATTGAATGAGCAGATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

107

Amino Acids

12.21

Weight (kDa)

5.22

Isoelectric Point (pI)

53.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 286
AfaI GTAC 1 cut(s) 13
AfiI CCNNNNNNNGG 2 cut(s) 46, 205
AgsI TTSAA 3 cut(s) 124, 242, 310
AluBI AGCT 2 cut(s) 77, 89
AluI AGCT 2 cut(s) 77, 89
Alw21I GWGCWC 1 cut(s) 252
Alw44I GTGCAC 1 cut(s) 248
AlwNI CAGNNNCTG 1 cut(s) 89
ApaLI GTGCAC 1 cut(s) 248
Asp700I GAANNNNTTC 1 cut(s) 219
AsuHPI GGTGA 1 cut(s) 238
BaeGI GKGCMC 1 cut(s) 252
Bbv12I GWGCWC 1 cut(s) 252
BfaI CTAG 1 cut(s) 261
BfmI CTRYAG 1 cut(s) 253
BoxI GACNNNNGTC 1 cut(s) 199
BsaJI CCNNGG 2 cut(s) 15, 190
Bsc4I CCNNNNNNNGG 2 cut(s) 46, 205
BseDI CCNNGG 2 cut(s) 15, 190
BseLI CCNNNNNNNGG 2 cut(s) 46, 205
BseSI GKGCMC 1 cut(s) 252
BsiHKAI GWGCWC 1 cut(s) 252
BslFI GGGAC 1 cut(s) 80
BslI CCNNNNNNNGG 2 cut(s) 46, 205
BsmFI GGGAC 1 cut(s) 80
Bsp1286I GDGCHC 1 cut(s) 252
Bsp19I CCATGG 1 cut(s) 15
BssECI CCNNGG 2 cut(s) 15, 190
BssT1I CCWWGG 2 cut(s) 15, 190
Bst4CI ACNGT 1 cut(s) 71
Bst6I CTCTTC 1 cut(s) 259
BstC8I GCNNGC 1 cut(s) 91
BstDSI CCRYGG 1 cut(s) 15
BstPAI GACNNNNGTC 1 cut(s) 199
BstSFI CTRYAG 1 cut(s) 253
BstSLI GKGCMC 1 cut(s) 252
BtgI CCRYGG 1 cut(s) 15
Cac8I GCNNGC 1 cut(s) 91
CaiI CAGNNNCTG 1 cut(s) 89
Csp6I GTAC 1 cut(s) 12
CviAII CATG 2 cut(s) 16, 292
CviJI RGCY 3 cut(s) 77, 89, 188
CviKI_1 RGCY 3 cut(s) 77, 89, 188
CviQI GTAC 1 cut(s) 12
Eam1104I CTCTTC 1 cut(s) 259
EarI CTCTTC 1 cut(s) 259
Eco130I CCWWGG 2 cut(s) 15, 190
Eco32I GATATC 1 cut(s) 286
Eco57I CTGAAG 1 cut(s) 286
EcoRV GATATC 1 cut(s) 286
EcoT14I CCWWGG 2 cut(s) 15, 190
ErhI CCWWGG 2 cut(s) 15, 190
FaeI CATG 2 cut(s) 19, 295
FaiI YATR 4 cut(s) 17, 114, 185, 293
FaqI GGGAC 1 cut(s) 80
FatI CATG 2 cut(s) 15, 291
FspBI CTAG 1 cut(s) 261
Hin1II CATG 2 cut(s) 19, 295
HinfI GANTC 4 cut(s) 195, 209, 215, 267
HphI GGTGA 1 cut(s) 238
Hpy166II GTNNAC 2 cut(s) 229, 250
Hpy188I TCNGA 2 cut(s) 214, 305
Hpy8I GTNNAC 2 cut(s) 229, 250
HpyAV CCTTC 1 cut(s) 310
HpyCH4III ACNGT 1 cut(s) 71
HpyCH4V TGCA 4 cut(s) 29, 101, 250, 295
Hsp92II CATG 2 cut(s) 19, 295
LmnI GCTCC 1 cut(s) 86
LpnPI CCDG 4 cut(s) 69, 75, 93, 209
MaeI CTAG 1 cut(s) 261
MaeIII GTNAC 1 cut(s) 79
MboII GAAGA 2 cut(s) 276, 280
MhlI GDGCHC 1 cut(s) 252
MluCI AATT 2 cut(s) 157, 242
MlyI GAGTC 3 cut(s) 189, 218, 276
MmeI TCCRAC 1 cut(s) 192
MroXI GAANNNNTTC 1 cut(s) 219
MseI TTAA 2 cut(s) 42, 141
NcoI CCATGG 1 cut(s) 15
NlaIII CATG 2 cut(s) 19, 295
PdmI GAANNNNTTC 1 cut(s) 219
PfeI GAWTC 1 cut(s) 215
PleI GAGTC 3 cut(s) 189, 217, 275
PpsI GAGTC 3 cut(s) 189, 217, 275
PshAI GACNNNNGTC 1 cut(s) 199
PstNI CAGNNNCTG 1 cut(s) 89
RsaI GTAC 1 cut(s) 13
RsaNI GTAC 1 cut(s) 12
SaqAI TTAA 2 cut(s) 42, 141
SchI GAGTC 3 cut(s) 189, 218, 276
SduI GDGCHC 1 cut(s) 252
SetI ASST 3 cut(s) 79, 91, 112
SfcI CTRYAG 1 cut(s) 253
Sse9I AATT 2 cut(s) 157, 242
SspMI CTAG 1 cut(s) 261
StyI CCWWGG 2 cut(s) 15, 190
TaaI ACNGT 1 cut(s) 71
TaqI TCGA 1 cut(s) 162
TasI AATT 2 cut(s) 157, 242
TfiI GAWTC 1 cut(s) 215
Tru1I TTAA 2 cut(s) 42, 141
Tru9I TTAA 2 cut(s) 42, 141
TspDTI ATGAA 3 cut(s) 180, 268, 280
VneI GTGCAC 1 cut(s) 248
XmnI GAANNNNTTC 1 cut(s) 219
XspI CTAG 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.