Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001041

Physical Location & Seq

Genomic Coordinates Forward (+)

5300394 .. 5301503

Gene Structure 1110 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG074100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGAGCGATGATTTTGTTGGTCTAATCATTAGCAAGGTTAGCATCAAAGATGATAGAAAATCGTTCTCTGAGGTCTGCAAGCAATGGTTTAAAGTGGTAGGTCTAAGCCGATCATCACTTCGCGTTTTCGCTGACCGACCTGGCTTTTCCCTGGCTGCACTCACTAGATTCCCAAATCTAGTTCATCTGGAAATATTTGAGCTTCAGACGGACTTCGAAATAGAAATCATAGCCCAGACATGCCGCAAAATAGAGAGCATCACGGTTTTCTGCTTTGATGCGCATCAGGAAGGTCATGGTGGTATTTTGAGGGGAAAAGGACTAATGGCTTTGGGAAATGGATGTCCCAAATTGTCCAAAGTTATGCTTGTTGGGGAAGACACGGTCCGGGATTCTGGAATTATTGCACTTCTACATTCAAAACATAGCTTTGACGCTTTGGTTTTCTTATCTAATAGCTTGATCACGGATCAAGCCCTCAGAGCAATTGGTTTGGCATCTTCAATTAGCATTTTGGAGTTGGTAGGTTGTTCCGGCATCAAGGATATGGGATTGGGGTTTTTGGCAAATGGGTCTACCTCGAAAACCCTCAAGAAATTGGTCCTAAATCTTTGCCGGGGAATCACTGATACTGGGGTCAAGCTTTTGCAGAAAATGTGTAGCTTGGAGCACCTGGAATTGTCCTACTGTGGGAGGAGAGGAGAAATCACTGATATTGGAGGTGTGGCAATCTCTGCAATTCAAACGCTCAAGGAAATAAAATTGGATGGTCTTCTGGGTGTATCAGGCCCTACCATGCTTGCTCTTGCCCAGAATTGCTGCAACTTGGAAATACTTGATTTAGAGGGATGTCAAGGTGTAACTGGAGCTGGCATTCGTGCATTTTCAAGTCATCAGTGCTTGAAACGCCTTGTGTTGCTAGGCTTAAGGAACTTTAATCTCTCTGATGTGGAGAGCGTAGCGTTTGGATGCCCCTCATTGGAGTCGGAATCTGTTGTGGTGGATTCACTGTGGAAGCTGGATGCAACATTGATGCAGGACAAGACAACACTAGAAGAGTCCTCAAATTCACTGAAATGTCGTAGCTTTTCAGTCTTGGATCTATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_6

Protein Analysis

369

Amino Acids

39.94

Weight (kDa)

6.19

Isoelectric Point (pI)

29.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7885	PF25372	107 - 244	1.6e-10	Leucine Rich Repeat Domain of unknown function (DUF7885)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001041)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40700 FvH4_5g10370 FvH4_5g12160 FvH4_5g12180 FvH4_5g12190 FvH4_5g12200 FvH4_5g12210 FvH4_5g12211
rosa_chinensis	RchiOBHm_Chr5g0073461 RchiOBHm_Chr5g0073471 RchiOBHm_Chr7g0185341 RchiOBHm_Chr7g0185381 RchiOBHm_Chr7g0185401
rosa_laevigata	RLG00000004916 RLG00000004917 RLG00000004921 RLG00000019401 RLG00000036387
rosa_multiflora	Rmu_co8366929.1_g000001 Rmu_co8392105.1_g000001 Rmu_sc0001761.1_g000011 Rmu_sc0001761.1_g000012 Rmu_sc0001761.1_g000013 Rmu_sc0001761.1_g000016 Rmu_sc0004670.1_g000010 Rmu_sc0008496.1_g000005 Rmu_sc0023242.1_g000005 Rmu_sc0023242.1_g000006 Rmu_ssc0000226.1_g000026 Rmu_ssc0000226.1_g000027
rosa_roxburghii	Rroxscaffold_1G00007790 Rroxscaffold_1G00017220 Rroxscaffold_2G00110040 Rroxscaffold_3G00269000 Rroxscaffold_3G00269010
rosa_rugosa	Rorug05G0423700 Rorug06G0468100 Rorug06G0468700
rosa_samantha	Rh2CG354600 Rh2CG354700 Rh2DG393800 Rh5AG481000 Rh5CG455400 Rh5CG524900 Rh5DG514100 Rh7AG074000 Rh7AG074100 Rh7AG074200 Rh7AG074600 Rh7BG072600 Rh7BG073200 Rh7BG073300 Rh7BG073400 Rh7DG073200 Rh7DG073600 Rh7DG073700 Rh7DG073800
rosa_wichuraiana	Rw2G030200 Rw7G006080 Rw7G006120 Rw7G006130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	282
AccI	GTMKAC	1 cut(s)	575
AccII	CGCG	1 cut(s)	123
AciI	CCGC	1 cut(s)	244
AclWI	GGATC	2 cut(s)	477, 1107
AcsI	RAATTY	1 cut(s)	1066
AcuI	CTGAAG	1 cut(s)	188
AfiI	CCNNNNNNNGG	2 cut(s)	690, 979
AflII	CTTAAG	1 cut(s)	925
AgsI	TTSAA	5 cut(s)	420, 504, 743, 888, 904
AjnI	CCWGG	3 cut(s)	139, 150, 672
AluBI	AGCT	8 cut(s)	202, 429, 459, 643, 663, 869, 1018, 1086
AluI	AGCT	8 cut(s)	202, 429, 459, 643, 663, 869, 1018, 1086
Alw21I	GWGCWC	1 cut(s)	672
AlwI	GGATC	2 cut(s)	477, 1107
AoxI	GGCC	1 cut(s)	787
ApeKI	GCWGC	2 cut(s)	155, 819
ApoI	RAATTY	1 cut(s)	1066
AspLEI	GCGC	1 cut(s)	283
AspS9I	GGNCC	3 cut(s)	385, 601, 788
AsuC2I	CCSGG	2 cut(s)	389, 617
AsuII	TTCGAA	1 cut(s)	216
AvaII	GGWCC	2 cut(s)	385, 601
BaeI	ACNNNNGTAYC	2 cut(s)	621, 654
BbsI	GAAGAC	2 cut(s)	384, 764
Bbv12I	GWGCWC	1 cut(s)	672
BbvI	GCAGC	2 cut(s)	142, 806
BccI	CCATC	1 cut(s)	761
BciT130I	CCWGG	3 cut(s)	141, 152, 674
BclI	TGATCA	1 cut(s)	462
BcnI	CCSGG	2 cut(s)	389, 617
BfaI	CTAG	4 cut(s)	165, 179, 920, 1052
BfrI	CTTAAG	1 cut(s)	925
BisI	GCNGC	3 cut(s)	156, 244, 820
BlsI	GCNGC	3 cut(s)	157, 245, 821
Bme1390I	CCNGG	5 cut(s)	141, 152, 389, 617, 674
Bme18I	GGWCC	2 cut(s)	385, 601
BmgT120I	GGNCC	3 cut(s)	385, 601, 788
BmrFI	CCNGG	5 cut(s)	141, 152, 389, 617, 674
BmrI	ACTGGG	1 cut(s)	642
BmsI	GCATC	9 cut(s)	51, 267, 268, 292, 506, 546, 959, 1012, 1023
BmuI	ACTGGG	1 cut(s)	642
BpiI	GAAGAC	2 cut(s)	384, 764
BpmI	CTGGAG	1 cut(s)	885
Bpu14I	TTCGAA	1 cut(s)	216
BpuEI	CTTGAG	2 cut(s)	575, 734
BpuMI	CCSGG	2 cut(s)	389, 617
BsaBI	GATNNNNATC	1 cut(s)	282
BsaJI	CCNNGG	2 cut(s)	150, 616
Bsc4I	CCNNNNNNNGG	2 cut(s)	690, 979
Bse1I	ACTGG	2 cut(s)	637, 868
Bse3DI	GCAATG	1 cut(s)	89
Bse8I	GATNNNNATC	1 cut(s)	282
BseBI	CCWGG	3 cut(s)	141, 152, 674
BseDI	CCNNGG	2 cut(s)	150, 616
BseGI	GGATG	5 cut(s)	347, 772, 854, 974, 1027
BseJI	GATNNNNATC	1 cut(s)	282
BseLI	CCNNNNNNNGG	2 cut(s)	690, 979
BseMI	GCAATG	1 cut(s)	89
BseMII	CTCAG	2 cut(s)	60, 493
BseNI	ACTGG	2 cut(s)	637, 868
BseRI	GAGGAG	2 cut(s)	709, 714
BseXI	GCAGC	2 cut(s)	142, 806
BsgI	GTGCAG	1 cut(s)	141
Bsh1236I	CGCG	1 cut(s)	123
BshFI	GGCC	1 cut(s)	789
BsiHKAI	GWGCWC	1 cut(s)	672
BsiSI	CCGG	3 cut(s)	388, 534, 616
BslFI	GGGAC	1 cut(s)	330
BslI	CCNNNNNNNGG	2 cut(s)	690, 979
BsmFI	GGGAC	1 cut(s)	330
BsmI	GAATGC	1 cut(s)	873
BsnI	GGCC	1 cut(s)	789
Bsp119I	TTCGAA	1 cut(s)	216
Bsp1286I	GDGCHC	1 cut(s)	672
Bsp143I	GATC	4 cut(s)	110, 462, 469, 1099
BspACI	CCGC	1 cut(s)	244
BspANI	GGCC	1 cut(s)	789
BspCNI	CTCAG	2 cut(s)	61, 492
BspFNI	CGCG	1 cut(s)	123
BspPI	GGATC	2 cut(s)	477, 1107
BspT104I	TTCGAA	1 cut(s)	216
BspTI	CTTAAG	1 cut(s)	925
BsrDI	GCAATG	1 cut(s)	89
BsrI	ACTGG	2 cut(s)	637, 868
BssECI	CCNNGG	2 cut(s)	150, 616
BssMI	GATC	4 cut(s)	110, 462, 469, 1099
Bst2UI	CCWGG	3 cut(s)	141, 152, 674
Bst4CI	ACNGT	4 cut(s)	265, 385, 689, 1011
Bst6I	CTCTTC	1 cut(s)	1050
BstAFI	CTTAAG	1 cut(s)	925
BstAPI	GCANNNNNTGC	1 cut(s)	734
BstBI	TTCGAA	1 cut(s)	216
BstC8I	GCNNGC	3 cut(s)	80, 801, 871
BstDEI	CTNAG	3 cut(s)	69, 104, 479
BstF5I	GGATG	5 cut(s)	347, 772, 854, 974, 1027
BstFNI	CGCG	1 cut(s)	123
BstHHI	GCGC	1 cut(s)	283
BstKTI	GATC	4 cut(s)	113, 465, 472, 1102
BstMBI	GATC	4 cut(s)	110, 462, 469, 1099
BstMWI	GCNNNNNNNGC	4 cut(s)	39, 482, 734, 906
BstNI	CCWGG	3 cut(s)	141, 152, 674
BstNSI	RCATGY	1 cut(s)	243
BstSCI	CCNGG	5 cut(s)	139, 150, 387, 615, 672
BstUI	CGCG	1 cut(s)	123
BstV1I	GCAGC	2 cut(s)	142, 806
BstV2I	GAAGAC	2 cut(s)	384, 764
BstX2I	RGATCY	1 cut(s)	1099
BstYI	RGATCY	1 cut(s)	1099
BsuRI	GGCC	1 cut(s)	789
BtgZI	GCGATG	1 cut(s)	21
BtsCI	GGATG	5 cut(s)	347, 772, 854, 974, 1027
BtsIMutI	CAGTG	5 cut(s)	624, 708, 902, 1007, 1070
Cac8I	GCNNGC	3 cut(s)	80, 801, 871
CfoI	GCGC	1 cut(s)	283
Cfr13I	GGNCC	3 cut(s)	385, 601, 788
CpoI	CGGWCCG	1 cut(s)	385
CseI	GACGC	1 cut(s)	443
CspI	CGGWCCG	1 cut(s)	385
CviAII	CATG	3 cut(s)	240, 296, 796
DdeI	CTNAG	3 cut(s)	69, 104, 479
DpnI	GATC	4 cut(s)	112, 464, 471, 1101
DpnII	GATC	4 cut(s)	110, 462, 469, 1099
DraI	TTTAAA	1 cut(s)	91
Eam1104I	CTCTTC	1 cut(s)	1050
EarI	CTCTTC	1 cut(s)	1050
Eco47I	GGWCC	2 cut(s)	385, 601
Eco57I	CTGAAG	1 cut(s)	188
EcoO109I	RGGNCCY	1 cut(s)	788
EcoRII	CCWGG	3 cut(s)	139, 150, 672
FaeI	CATG	3 cut(s)	243, 299, 799
FaiI	YATR	7 cut(s)	230, 241, 297, 365, 426, 548, 797
FalI	AAGNNNNNCTT	2 cut(s)	351, 383
FaqI	GGGAC	1 cut(s)	330
FatI	CATG	3 cut(s)	239, 295, 795
FbaI	TGATCA	1 cut(s)	462
FblI	GTMKAC	1 cut(s)	575
Fnu4HI	GCNGC	3 cut(s)	156, 244, 820
FokI	GGATG	5 cut(s)	354, 779, 861, 981, 1034
Fsp4HI	GCNGC	3 cut(s)	156, 244, 820
FspAI	RTGCGCAY	1 cut(s)	282
FspBI	CTAG	4 cut(s)	165, 179, 920, 1052
FspI	TGCGCA	1 cut(s)	282
GlaI	GCGC	1 cut(s)	282
GluI	GCNGC	3 cut(s)	156, 244, 820
GsuI	CTGGAG	1 cut(s)	885
HaeIII	GGCC	1 cut(s)	789
HapII	CCGG	3 cut(s)	388, 534, 616
HgaI	GACGC	1 cut(s)	443
HhaI	GCGC	1 cut(s)	283
Hin1II	CATG	3 cut(s)	243, 299, 799
Hin6I	GCGC	1 cut(s)	281
HinP1I	GCGC	1 cut(s)	281
HindIII	AAGCTT	1 cut(s)	641
HinfI	GANTC	7 cut(s)	168, 392, 621, 983, 989, 1004, 1058
HpaII	CCGG	3 cut(s)	388, 534, 616
Hpy166II	GTNNAC	1 cut(s)	576
Hpy188I	TCNGA	5 cut(s)	70, 207, 482, 946, 988
Hpy188III	TCNNGA	4 cut(s)	188, 287, 396, 592
Hpy8I	GTNNAC	1 cut(s)	576
HpyAV	CCTTC	1 cut(s)	284
HpyCH4III	ACNGT	4 cut(s)	265, 385, 689, 1011
HpyCH4V	TGCA	9 cut(s)	78, 158, 407, 649, 737, 822, 881, 1025, 1036
HpyF10VI	GCNNNNNNNGC	4 cut(s)	39, 482, 734, 906
HpyF3I	CTNAG	3 cut(s)	69, 104, 479
Hsp92II	CATG	3 cut(s)	243, 299, 799
HspAI	GCGC	1 cut(s)	281
Ksp22I	TGATCA	1 cut(s)	462
Kzo9I	GATC	4 cut(s)	110, 462, 469, 1099
LmnI	GCTCC	2 cut(s)	667, 866
Lsp1109I	GCAGC	2 cut(s)	142, 806
LweI	GCATC	9 cut(s)	51, 267, 268, 292, 506, 546, 959, 1012, 1023
MaeI	CTAG	4 cut(s)	165, 179, 920, 1052
MaeIII	GTNAC	1 cut(s)	859
MalI	GATC	4 cut(s)	112, 464, 471, 1101
MboI	GATC	4 cut(s)	110, 462, 469, 1099
MboII	GAAGA	4 cut(s)	389, 492, 764, 1067
MfeI	CAATTG	1 cut(s)	486
MflI	RGATCY	1 cut(s)	1099
MhlI	GDGCHC	1 cut(s)	672
MlyI	GAGTC	2 cut(s)	992, 1067
MmeI	TCCRAC	1 cut(s)	966
MseI	TTAA	3 cut(s)	90, 926, 936
MslI	CAYNNNNRTG	1 cut(s)	1075
MspCI	CTTAAG	1 cut(s)	925
MspI	CCGG	3 cut(s)	388, 534, 616
MspR9I	CCNGG	5 cut(s)	141, 152, 389, 617, 674
MunI	CAATTG	1 cut(s)	486
Mva1269I	GAATGC	1 cut(s)	873
MvaI	CCWGG	3 cut(s)	141, 152, 674
MvnI	CGCG	1 cut(s)	123
MwoI	GCNNNNNNNGC	4 cut(s)	39, 482, 734, 906
NciI	CCSGG	2 cut(s)	389, 617
NdeII	GATC	4 cut(s)	110, 462, 469, 1099
NlaIII	CATG	3 cut(s)	243, 299, 799
NsbI	TGCGCA	1 cut(s)	282
NspI	RCATGY	1 cut(s)	243
NspV	TTCGAA	1 cut(s)	216
PctI	GAATGC	1 cut(s)	873
PfeI	GAWTC	5 cut(s)	168, 392, 621, 989, 1004
PflFI	GACNNNGTC	1 cut(s)	383
PfoI	TCCNGGA	1 cut(s)	387
PkrI	GCNGC	3 cut(s)	157, 245, 821
PleI	GAGTC	2 cut(s)	991, 1066
PpsI	GAGTC	2 cut(s)	991, 1066
Psp6I	CCWGG	3 cut(s)	139, 150, 672
PspGI	CCWGG	3 cut(s)	139, 150, 672
PspPI	GGNCC	3 cut(s)	385, 601, 788
PsuI	RGATCY	1 cut(s)	1099
PsyI	GACNNNGTC	1 cut(s)	383
RseI	CAYNNNNRTG	1 cut(s)	1075
Rsr2I	CGGWCCG	1 cut(s)	385
RsrII	CGGWCCG	1 cut(s)	385
SaqAI	TTAA	3 cut(s)	90, 926, 936
SatI	GCNGC	3 cut(s)	156, 244, 820
Sau3AI	GATC	4 cut(s)	110, 462, 469, 1099
Sau96I	GGNCC	3 cut(s)	385, 601, 788
SchI	GAGTC	2 cut(s)	992, 1067
ScrFI	CCNGG	5 cut(s)	141, 152, 389, 617, 674
SduI	GDGCHC	1 cut(s)	672
SfaNI	GCATC	9 cut(s)	51, 267, 268, 292, 506, 546, 959, 1012, 1023
SfuI	TTCGAA	1 cut(s)	216
SinI	GGWCC	2 cut(s)	385, 601
SmiMI	CAYNNNNRTG	1 cut(s)	1075
SmlI	CTYRAG	3 cut(s)	590, 749, 925
SmoI	CTYRAG	3 cut(s)	590, 749, 925
SsiI	CCGC	1 cut(s)	244
SspI	AATATT	1 cut(s)	195
SspMI	CTAG	4 cut(s)	165, 179, 920, 1052
StyD4I	CCNGG	5 cut(s)	139, 150, 387, 615, 672
TaaI	ACNGT	4 cut(s)	265, 385, 689, 1011
TaqI	TCGA	2 cut(s)	216, 581
TaqII	GACCGA	1 cut(s)	150
TauI	GCSGC	1 cut(s)	246
TfiI	GAWTC	5 cut(s)	168, 392, 621, 989, 1004
Tru1I	TTAA	3 cut(s)	90, 926, 936
Tru9I	TTAA	3 cut(s)	90, 926, 936
TscAI	CASTG	5 cut(s)	631, 715, 902, 1014, 1077
TseI	GCWGC	2 cut(s)	155, 819
TspDTI	ATGAA	1 cut(s)	173
TspGWI	ACGGA	2 cut(s)	224, 482
TspRI	CASTG	5 cut(s)	631, 715, 902, 1014, 1077
Tth111I	GACNNNGTC	1 cut(s)	383
Vha464I	CTTAAG	1 cut(s)	925
VpaK11BI	GGWCC	2 cut(s)	385, 601
XapI	RAATTY	1 cut(s)	1066
XceI	RCATGY	1 cut(s)	243
XmiI	GTMKAC	1 cut(s)	575
XspI	CTAG	4 cut(s)	165, 179, 920, 1052

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.