Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001761.1

Orthogroup ID

OG0001041

Physical Location & Seq

Genomic Coordinates Forward (+)

58367 .. 58783

Gene Structure 417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001761.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

atgtgtagcttggagcacctgaaattgtcttatgagggagaagtcagtcaaatcactgatattggaggtgtgggaatttctgcaattagaaccctcagggaattgatattgaattatgtgaacctgtcggaccctaccatggccgctcttgcacagaattgccgcaacttggaaatgcttgatttaggggggttaaccaacttcagtctttctgatgtggaacagatagtgcctggatgcccatcattggattctgttgtggtggattcacataagaggtttgatccgacttggaagatgcacgacaaaactagaggagttattaagtgtccagtttcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_6

Protein Analysis

113

Amino Acids

12.4

Weight (kDa)

5.2

Isoelectric Point (pI)

33.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001041)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40700 FvH4_5g10370 FvH4_5g12160 FvH4_5g12180 FvH4_5g12190 FvH4_5g12200 FvH4_5g12210 FvH4_5g12211
rosa_chinensis	RchiOBHm_Chr5g0073461 RchiOBHm_Chr5g0073471 RchiOBHm_Chr7g0185341 RchiOBHm_Chr7g0185381 RchiOBHm_Chr7g0185401
rosa_laevigata	RLG00000004916 RLG00000004917 RLG00000004921 RLG00000019401 RLG00000036387
rosa_multiflora	Rmu_co8366929.1_g000001 Rmu_co8392105.1_g000001 Rmu_sc0001761.1_g000011 Rmu_sc0001761.1_g000012 Rmu_sc0001761.1_g000013 Rmu_sc0001761.1_g000016 Rmu_sc0004670.1_g000010 Rmu_sc0008496.1_g000005 Rmu_sc0023242.1_g000005 Rmu_sc0023242.1_g000006 Rmu_ssc0000226.1_g000026 Rmu_ssc0000226.1_g000027
rosa_roxburghii	Rroxscaffold_1G00007790 Rroxscaffold_1G00017220 Rroxscaffold_2G00110040 Rroxscaffold_3G00269000 Rroxscaffold_3G00269010
rosa_rugosa	Rorug05G0423700 Rorug06G0468100 Rorug06G0468700
rosa_samantha	Rh2CG354600 Rh2CG354700 Rh2DG393800 Rh5AG481000 Rh5CG455400 Rh5CG524900 Rh5DG514100 Rh7AG074000 Rh7AG074100 Rh7AG074200 Rh7AG074600 Rh7BG072600 Rh7BG073200 Rh7BG073300 Rh7BG073400 Rh7DG073200 Rh7DG073600 Rh7DG073700 Rh7DG073800
rosa_wichuraiana	Rw2G030200 Rw7G006080 Rw7G006120 Rw7G006130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	146
AciI	CCGC	2 cut(s)	144, 163
AclWI	GGATC	1 cut(s)	278
AcoI	YGGCCR	1 cut(s)	141
AcsI	RAATTY	1 cut(s)	75
AcuI	CTGAAG	1 cut(s)	187
AfiI	CCNNNNNNNGG	3 cut(s)	139, 169, 247
AgsI	TTSAA	1 cut(s)	112
AjnI	CCWGG	1 cut(s)	232
AluBI	AGCT	1 cut(s)	9
AluI	AGCT	1 cut(s)	9
Alw21I	GWGCWC	1 cut(s)	18
AlwI	GGATC	1 cut(s)	278
AoxI	GGCC	1 cut(s)	141
ApoI	RAATTY	1 cut(s)	75
AspS9I	GGNCC	1 cut(s)	130
AvaII	GGWCC	1 cut(s)	130
AxyI	CCTNAGG	1 cut(s)	95
Bbv12I	GWGCWC	1 cut(s)	18
BccI	CCATC	1 cut(s)	250
BciT130I	CCWGG	1 cut(s)	234
BfaI	CTAG	1 cut(s)	312
BisI	GCNGC	2 cut(s)	144, 163
BlsI	GCNGC	2 cut(s)	145, 164
Bme1390I	CCNGG	1 cut(s)	234
Bme18I	GGWCC	1 cut(s)	130
BmgT120I	GGNCC	1 cut(s)	130
BmiI	GGNNCC	1 cut(s)	132
BmrFI	CCNGG	1 cut(s)	234
BmsI	GCATC	2 cut(s)	227, 288
BsaBI	GATNNNNATC	1 cut(s)	241
BsaJI	CCNNGG	1 cut(s)	138
Bsc4I	CCNNNNNNNGG	3 cut(s)	139, 169, 247
Bse1I	ACTGG	1 cut(s)	332
Bse21I	CCTNAGG	1 cut(s)	95
Bse8I	GATNNNNATC	1 cut(s)	241
BseBI	CCWGG	1 cut(s)	234
BseDI	CCNNGG	1 cut(s)	138
BseGI	GGATG	1 cut(s)	242
BseJI	GATNNNNATC	1 cut(s)	241
BseLI	CCNNNNNNNGG	3 cut(s)	139, 169, 247
BseMII	CTCAG	1 cut(s)	109
BseNI	ACTGG	1 cut(s)	332
BseRI	GAGGAG	1 cut(s)	330
BshFI	GGCC	1 cut(s)	143
BsiHKAI	GWGCWC	1 cut(s)	18
BslI	CCNNNNNNNGG	3 cut(s)	139, 169, 247
BsnI	GGCC	1 cut(s)	143
Bsp1286I	GDGCHC	1 cut(s)	18
Bsp143I	GATC	1 cut(s)	283
Bsp19I	CCATGG	1 cut(s)	138
BspACI	CCGC	2 cut(s)	144, 163
BspANI	GGCC	1 cut(s)	143
BspCNI	CTCAG	1 cut(s)	108
BspHI	TCATGA	1 cut(s)	338
BspLI	GGNNCC	1 cut(s)	132
BspPI	GGATC	1 cut(s)	278
BsrBI	CCGCTC	1 cut(s)	146
BsrI	ACTGG	1 cut(s)	332
BssECI	CCNNGG	1 cut(s)	138
BssMI	GATC	1 cut(s)	283
BssT1I	CCWWGG	1 cut(s)	138
Bst2UI	CCWGG	1 cut(s)	234
BstDEI	CTNAG	1 cut(s)	95
BstDSI	CCRYGG	1 cut(s)	138
BstF5I	GGATG	1 cut(s)	242
BstKTI	GATC	1 cut(s)	286
BstMBI	GATC	1 cut(s)	283
BstMWI	GCNNNNNNNGC	1 cut(s)	149
BstNI	CCWGG	1 cut(s)	234
BstSCI	CCNGG	1 cut(s)	232
Bsu36I	CCTNAGG	1 cut(s)	95
BsuRI	GGCC	1 cut(s)	143
BtgI	CCRYGG	1 cut(s)	138
BtsCI	GGATG	1 cut(s)	242
BtsIMutI	CAGTG	1 cut(s)	54
CciI	TCATGA	1 cut(s)	338
Cfr13I	GGNCC	1 cut(s)	130
CviAII	CATG	2 cut(s)	139, 339
CviJI	RGCY	2 cut(s)	9, 143
CviKI_1	RGCY	2 cut(s)	9, 143
DdeI	CTNAG	1 cut(s)	95
DpnI	GATC	1 cut(s)	285
DpnII	GATC	1 cut(s)	283
EaeI	YGGCCR	1 cut(s)	141
Eco130I	CCWWGG	1 cut(s)	138
Eco47I	GGWCC	1 cut(s)	130
Eco57I	CTGAAG	1 cut(s)	187
Eco81I	CCTNAGG	1 cut(s)	95
EcoRII	CCWGG	1 cut(s)	232
EcoT14I	CCWWGG	1 cut(s)	138
ErhI	CCWWGG	1 cut(s)	138
FaeI	CATG	2 cut(s)	142, 342
FaiI	YATR	5 cut(s)	33, 117, 140, 273, 340
FatI	CATG	2 cut(s)	138, 338
Fnu4HI	GCNGC	2 cut(s)	144, 163
FokI	GGATG	1 cut(s)	249
Fsp4HI	GCNGC	2 cut(s)	144, 163
FspBI	CTAG	1 cut(s)	312
GluI	GCNGC	2 cut(s)	144, 163
HaeIII	GGCC	1 cut(s)	143
Hin1II	CATG	2 cut(s)	142, 342
HincII	GTYRAC	1 cut(s)	195
HindII	GTYRAC	1 cut(s)	195
HinfI	GANTC	2 cut(s)	251, 266
HpaI	GTTAAC	1 cut(s)	195
Hpy166II	GTNNAC	2 cut(s)	121, 195
Hpy188I	TCNGA	3 cut(s)	130, 214, 288
Hpy188III	TCNNGA	1 cut(s)	339
Hpy8I	GTNNAC	2 cut(s)	121, 195
HpyCH4V	TGCA	3 cut(s)	83, 152, 301
HpyF10VI	GCNNNNNNNGC	1 cut(s)	149
HpyF3I	CTNAG	1 cut(s)	95
Hsp92II	CATG	2 cut(s)	142, 342
KspAI	GTTAAC	1 cut(s)	195
Kzo9I	GATC	1 cut(s)	283
LmnI	GCTCC	1 cut(s)	13
LpnPI	CCDG	5 cut(s)	32, 82, 137, 219, 246
LweI	GCATC	2 cut(s)	227, 288
MaeI	CTAG	1 cut(s)	312
MalI	GATC	1 cut(s)	285
MbiI	CCGCTC	1 cut(s)	146
MboI	GATC	1 cut(s)	283
MboII	GAAGA	1 cut(s)	307
MhlI	GDGCHC	1 cut(s)	18
MluCI	AATT	6 cut(s)	23, 75, 84, 101, 112, 157
MmeI	TCCRAC	2 cut(s)	108, 311
MnlI	CCTC	5 cut(s)	28, 59, 104, 270, 308
MseI	TTAA	2 cut(s)	194, 324
MspR9I	CCNGG	1 cut(s)	234
MvaI	CCWGG	1 cut(s)	234
MwoI	GCNNNNNNNGC	1 cut(s)	149
NcoI	CCATGG	1 cut(s)	138
NdeII	GATC	1 cut(s)	283
NlaIII	CATG	2 cut(s)	142, 342
NlaIV	GGNNCC	1 cut(s)	132
PagI	TCATGA	1 cut(s)	338
PfeI	GAWTC	2 cut(s)	251, 266
PkrI	GCNGC	2 cut(s)	145, 164
Psp6I	CCWGG	1 cut(s)	232
PspGI	CCWGG	1 cut(s)	232
PspN4I	GGNNCC	1 cut(s)	132
PspPI	GGNCC	1 cut(s)	130
SaqAI	TTAA	2 cut(s)	194, 324
SatI	GCNGC	2 cut(s)	144, 163
Sau3AI	GATC	1 cut(s)	283
Sau96I	GGNCC	1 cut(s)	130
ScrFI	CCNGG	1 cut(s)	234
SduI	GDGCHC	1 cut(s)	18
SetI	ASST	5 cut(s)	11, 21, 70, 126, 281
SfaNI	GCATC	2 cut(s)	227, 288
SinI	GGWCC	1 cut(s)	130
Sse9I	AATT	6 cut(s)	23, 75, 84, 101, 112, 157
SsiI	CCGC	2 cut(s)	144, 163
SspMI	CTAG	1 cut(s)	312
StyD4I	CCNGG	1 cut(s)	232
StyI	CCWWGG	1 cut(s)	138
TasI	AATT	6 cut(s)	23, 75, 84, 101, 112, 157
TauI	GCSGC	2 cut(s)	146, 165
TfiI	GAWTC	2 cut(s)	251, 266
Tru1I	TTAA	2 cut(s)	194, 324
Tru9I	TTAA	2 cut(s)	194, 324
TscAI	CASTG	1 cut(s)	61
TspDTI	ATGAA	1 cut(s)	327
TspRI	CASTG	1 cut(s)	61
VpaK11BI	GGWCC	1 cut(s)	130
XapI	RAATTY	1 cut(s)	75
XspI	CTAG	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.