Rroxscaffold_3G00269010

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0001041
Physical Location & Seq
Forward (+)
61970985 .. 61972094
1110 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00269010.1

Sequence Viewer

Length: 1110 bp
ATGAGCGATGATTTTGTTGGTCTAATCATTAGCAAGGTTAGCATCAAAGATGATAGAAAATCGTTCTCTGAGGTCTGCAAGCAATGGTTTAAAGTGGAAGGTCTAAGCCGATCATCACTTCGCCTTTTCGCTGACCGACCTGGCTTTTCCCTGGCTGCACTCACTGGATTCCCAAATCTAGTTCATCTGGAAATATTTGAGCTTAAGACGGACATCGAAATCAAAATCATAGCCCAGACATGCTGCAAAATAGAAAGCATCACGGTTTTCTGCTTTGATGCGCATCAGGAAGGTCATGGTGGTATTTTGAGGGGAAAAGGACTAATGGCTTTGGGAAATGGATGTCCCAAATTGTCCAAAGTTATGCTTGCTGGGGAAGACATGGTCCGGGATTCTGGAATTATTGCACTTCTACATTCAAAACATAGCTTGGATGCTTTGGTTTTCTTATCTAATAGCTTGATCACGGATCAAGCCCTCGGAGCAATTGGTTTGGCATCTTCAATTAGCATTTTGGAGTTGGTAGGTTGTTCCGGCATCAAGTATATGGGATTGGGGTTTTTGGCAAATGGGTCTACCTCGAAAACCCTCAAGAAATTGGTCCTAAATCTTTGCCGGGGAATCACTGATACTGGGGTCAAGCTTTCTAATAGCTTGATCACGGATCAAGCCCTCAGAGCAATTGGTTTAGCATCTTCAATTAGCATTTTGGAGTTGGTAAGTTGTTCCGGCATCGAGGATATGGGATTGGGGTTTTTGGCAAATGGGTCTACCTCGAAAACCCTCAAGAAATTGGTCCTAAATCTTTGCTGGGGAATCACTGATACTGGGGTCAAGCTTTTGCAGAAAATGTGTAGCTTGGAGCACCTGGAATTGTCCTACTGTGGGAGGAGAGGAGAAATCACTGATATTGGAAGTCTGGCAATCTCTGCAATTCAAACGCTCAAGGAAATAAAATTGGATGGTCTTCTGGGTGTATCAGACCCTACCATGCTTGCTCTTGCCCAGAATTGCTGCAACTTGGAAATACTTGATTTAGAGGGATGTCAAGGTGTAACTGGAGCTCGCATTTGTGCATTTTCAAGTCATCAGTGCTTGAAACGTTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

369

Amino Acids

39.41

Weight (kDa)

7.44

Isoelectric Point (pI)

23.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box_5 PF18511 1 - 38 8.5e-07 F-box
DUF7885 PF25372 107 - 286 2.3e-12 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 282
AccI GTMKAC 2 cut(s) 575, 770
AclI AACGTT 1 cut(s) 1102
AclWI GGATC 2 cut(s) 477, 672
AfiI CCNNNNNNNGG 1 cut(s) 885
AflII CTTAAG 1 cut(s) 203
AgsI TTSAA 6 cut(s) 420, 504, 699, 938, 1083, 1099
AjnI CCWGG 3 cut(s) 139, 150, 867
AluBI AGCT 8 cut(s) 202, 429, 459, 643, 654, 838, 858, 1064
AluI AGCT 8 cut(s) 202, 429, 459, 643, 654, 838, 858, 1064
Alw21I GWGCWC 2 cut(s) 867, 1066
AlwI GGATC 2 cut(s) 477, 672
ApeKI GCWGC 3 cut(s) 155, 243, 1014
AspLEI GCGC 1 cut(s) 283
AspS9I GGNCC 3 cut(s) 385, 601, 796
AsuC2I CCSGG 2 cut(s) 389, 617
AvaII GGWCC 3 cut(s) 385, 601, 796
BaeI ACNNNNGTAYC 4 cut(s) 621, 654, 816, 849
BanII GRGCYC 1 cut(s) 1066
BbsI GAAGAC 2 cut(s) 384, 959
Bbv12I GWGCWC 2 cut(s) 867, 1066
BbvI GCAGC 3 cut(s) 142, 230, 1001
BccI CCATC 1 cut(s) 956
BciT130I CCWGG 3 cut(s) 141, 152, 869
BclI TGATCA 2 cut(s) 462, 657
BcnI CCSGG 2 cut(s) 389, 617
BfaI CTAG 2 cut(s) 179, 1108
BfrI CTTAAG 1 cut(s) 203
BisI GCNGC 3 cut(s) 156, 244, 1015
BlsI GCNGC 3 cut(s) 157, 245, 1016
Bme1390I CCNGG 5 cut(s) 141, 152, 389, 617, 869
Bme18I GGWCC 3 cut(s) 385, 601, 796
BmgT120I GGNCC 3 cut(s) 385, 601, 796
BmrFI CCNGG 5 cut(s) 141, 152, 389, 617, 869
BmrI ACTGGG 2 cut(s) 642, 837
BmsI GCATC 9 cut(s) 51, 267, 268, 292, 424, 506, 546, 701, 741
BmuI ACTGGG 2 cut(s) 642, 837
BpiI GAAGAC 2 cut(s) 384, 959
BpmI CTGGAG 1 cut(s) 1080
BpuEI CTTGAG 3 cut(s) 575, 770, 929
BpuMI CCSGG 2 cut(s) 389, 617
BsaBI GATNNNNATC 1 cut(s) 282
BsaJI CCNNGG 3 cut(s) 150, 478, 616
Bsc4I CCNNNNNNNGG 1 cut(s) 885
Bse1I ACTGG 4 cut(s) 169, 637, 832, 1063
Bse3DI GCAATG 1 cut(s) 89
Bse8I GATNNNNATC 1 cut(s) 282
BseBI CCWGG 3 cut(s) 141, 152, 869
BseDI CCNNGG 3 cut(s) 150, 478, 616
BseGI GGATG 4 cut(s) 347, 439, 967, 1049
BseJI GATNNNNATC 1 cut(s) 282
BseLI CCNNNNNNNGG 1 cut(s) 885
BseMI GCAATG 1 cut(s) 89
BseMII CTCAG 2 cut(s) 60, 688
BseNI ACTGG 4 cut(s) 169, 637, 832, 1063
BseRI GAGGAG 2 cut(s) 904, 909
BseXI GCAGC 3 cut(s) 142, 230, 1001
BseYI CCCAGC 2 cut(s) 371, 810
BsgI GTGCAG 1 cut(s) 141
BsiHKAI GWGCWC 2 cut(s) 867, 1066
BsiSI CCGG 4 cut(s) 388, 534, 616, 729
BslFI GGGAC 1 cut(s) 330
BslI CCNNNNNNNGG 1 cut(s) 885
BsmFI GGGAC 1 cut(s) 330
Bsp1286I GDGCHC 2 cut(s) 867, 1066
Bsp143I GATC 5 cut(s) 110, 462, 469, 657, 664
BspCNI CTCAG 2 cut(s) 61, 687
BspPI GGATC 2 cut(s) 477, 672
BspTI CTTAAG 1 cut(s) 203
BsrDI GCAATG 1 cut(s) 89
BsrI ACTGG 4 cut(s) 169, 637, 832, 1063
BssECI CCNNGG 3 cut(s) 150, 478, 616
BssMI GATC 5 cut(s) 110, 462, 469, 657, 664
Bst2UI CCWGG 3 cut(s) 141, 152, 869
Bst4CI ACNGT 2 cut(s) 265, 884
BstAFI CTTAAG 1 cut(s) 203
BstAPI GCANNNNNTGC 1 cut(s) 929
BstC8I GCNNGC 4 cut(s) 80, 369, 996, 1066
BstDEI CTNAG 3 cut(s) 69, 104, 674
BstF5I GGATG 4 cut(s) 347, 439, 967, 1049
BstHHI GCGC 1 cut(s) 283
BstKTI GATC 5 cut(s) 113, 465, 472, 660, 667
BstMBI GATC 5 cut(s) 110, 462, 469, 657, 664
BstMWI GCNNNNNNNGC 4 cut(s) 39, 482, 677, 929
BstNI CCWGG 3 cut(s) 141, 152, 869
BstNSI RCATGY 1 cut(s) 243
BstSCI CCNGG 5 cut(s) 139, 150, 387, 615, 867
BstV1I GCAGC 3 cut(s) 142, 230, 1001
BstV2I GAAGAC 2 cut(s) 384, 959
BtgZI GCGATG 1 cut(s) 21
BtsCI GGATG 4 cut(s) 347, 439, 967, 1049
BtsIMutI CAGTG 5 cut(s) 162, 624, 819, 903, 1097
Cac8I GCNNGC 4 cut(s) 80, 369, 996, 1066
CfoI GCGC 1 cut(s) 283
Cfr13I GGNCC 3 cut(s) 385, 601, 796
CviAII CATG 4 cut(s) 240, 296, 382, 991
DdeI CTNAG 3 cut(s) 69, 104, 674
DpnI GATC 5 cut(s) 112, 464, 471, 659, 666
DpnII GATC 5 cut(s) 110, 462, 469, 657, 664
DraI TTTAAA 1 cut(s) 91
Ecl136II GAGCTC 1 cut(s) 1064
Eco24I GRGCYC 1 cut(s) 1066
Eco47I GGWCC 3 cut(s) 385, 601, 796
Eco53kI GAGCTC 1 cut(s) 1064
EcoICRI GAGCTC 1 cut(s) 1064
EcoRII CCWGG 3 cut(s) 139, 150, 867
EcoT38I GRGCYC 1 cut(s) 1066
FaeI CATG 4 cut(s) 243, 299, 385, 994
FalI AAGNNNNNCTT 2 cut(s) 351, 383
FaqI GGGAC 1 cut(s) 330
FatI CATG 4 cut(s) 239, 295, 381, 990
FbaI TGATCA 2 cut(s) 462, 657
FblI GTMKAC 2 cut(s) 575, 770
Fnu4HI GCNGC 3 cut(s) 156, 244, 1015
FokI GGATG 4 cut(s) 354, 446, 974, 1056
FriOI GRGCYC 1 cut(s) 1066
Fsp4HI GCNGC 3 cut(s) 156, 244, 1015
FspAI RTGCGCAY 1 cut(s) 282
FspBI CTAG 2 cut(s) 179, 1108
FspI TGCGCA 1 cut(s) 282
GlaI GCGC 1 cut(s) 282
GluI GCNGC 3 cut(s) 156, 244, 1015
GsaI CCCAGC 2 cut(s) 375, 814
GsuI CTGGAG 1 cut(s) 1080
HapII CCGG 4 cut(s) 388, 534, 616, 729
HhaI GCGC 1 cut(s) 283
Hin1II CATG 4 cut(s) 243, 299, 385, 994
Hin6I GCGC 1 cut(s) 281
HinP1I GCGC 1 cut(s) 281
HindIII AAGCTT 2 cut(s) 641, 836
HinfI GANTC 4 cut(s) 168, 392, 621, 816
HpaII CCGG 4 cut(s) 388, 534, 616, 729
Hpy166II GTNNAC 2 cut(s) 576, 771
Hpy188I TCNGA 4 cut(s) 70, 482, 677, 982
Hpy188III TCNNGA 5 cut(s) 188, 287, 396, 592, 787
Hpy8I GTNNAC 2 cut(s) 576, 771
HpyAV CCTTC 2 cut(s) 92, 284
HpyCH4III ACNGT 2 cut(s) 265, 884
HpyCH4IV ACGT 1 cut(s) 1102
HpyCH4V TGCA 8 cut(s) 78, 158, 246, 407, 844, 932, 1017, 1076
HpyF10VI GCNNNNNNNGC 4 cut(s) 39, 482, 677, 929
HpyF3I CTNAG 3 cut(s) 69, 104, 674
HpySE526I ACGT 1 cut(s) 1102
Hsp92II CATG 4 cut(s) 243, 299, 385, 994
HspAI GCGC 1 cut(s) 281
Ksp22I TGATCA 2 cut(s) 462, 657
Kzo9I GATC 5 cut(s) 110, 462, 469, 657, 664
LmnI GCTCC 3 cut(s) 482, 862, 1061
Lsp1109I GCAGC 3 cut(s) 142, 230, 1001
LweI GCATC 9 cut(s) 51, 267, 268, 292, 424, 506, 546, 701, 741
MaeI CTAG 2 cut(s) 179, 1108
MaeII ACGT 1 cut(s) 1102
MaeIII GTNAC 1 cut(s) 1054
MalI GATC 5 cut(s) 112, 464, 471, 659, 666
MboI GATC 5 cut(s) 110, 462, 469, 657, 664
MboII GAAGA 4 cut(s) 389, 492, 687, 959
MfeI CAATTG 2 cut(s) 486, 681
MhlI GDGCHC 2 cut(s) 867, 1066
MseI TTAA 2 cut(s) 90, 204
MspCI CTTAAG 1 cut(s) 203
MspI CCGG 4 cut(s) 388, 534, 616, 729
MspR9I CCNGG 5 cut(s) 141, 152, 389, 617, 869
MunI CAATTG 2 cut(s) 486, 681
MvaI CCWGG 3 cut(s) 141, 152, 869
MwoI GCNNNNNNNGC 4 cut(s) 39, 482, 677, 929
NciI CCSGG 2 cut(s) 389, 617
NdeII GATC 5 cut(s) 110, 462, 469, 657, 664
NlaIII CATG 4 cut(s) 243, 299, 385, 994
NsbI TGCGCA 1 cut(s) 282
NspI RCATGY 1 cut(s) 243
PfeI GAWTC 4 cut(s) 168, 392, 621, 816
PflFI GACNNNGTC 1 cut(s) 383
PfoI TCCNGGA 1 cut(s) 387
PkrI GCNGC 3 cut(s) 157, 245, 1016
Psp124BI GAGCTC 1 cut(s) 1066
Psp1406I AACGTT 1 cut(s) 1102
Psp6I CCWGG 3 cut(s) 139, 150, 867
PspFI CCCAGC 2 cut(s) 371, 810
PspGI CCWGG 3 cut(s) 139, 150, 867
PspPI GGNCC 3 cut(s) 385, 601, 796
PsyI GACNNNGTC 1 cut(s) 383
SacI GAGCTC 1 cut(s) 1066
SaqAI TTAA 2 cut(s) 90, 204
SatI GCNGC 3 cut(s) 156, 244, 1015
Sau3AI GATC 5 cut(s) 110, 462, 469, 657, 664
Sau96I GGNCC 3 cut(s) 385, 601, 796
ScrFI CCNGG 5 cut(s) 141, 152, 389, 617, 869
SduI GDGCHC 2 cut(s) 867, 1066
SfaNI GCATC 9 cut(s) 51, 267, 268, 292, 424, 506, 546, 701, 741
SinI GGWCC 3 cut(s) 385, 601, 796
SmlI CTYRAG 4 cut(s) 203, 590, 785, 944
SmoI CTYRAG 4 cut(s) 203, 590, 785, 944
SspI AATATT 1 cut(s) 195
SspMI CTAG 2 cut(s) 179, 1108
SstI GAGCTC 1 cut(s) 1066
StyD4I CCNGG 5 cut(s) 139, 150, 387, 615, 867
TaaI ACNGT 2 cut(s) 265, 884
TaiI ACGT 1 cut(s) 1105
TaqI TCGA 4 cut(s) 216, 581, 735, 776
TaqII GACCGA 1 cut(s) 150
TfiI GAWTC 4 cut(s) 168, 392, 621, 816
Tru1I TTAA 2 cut(s) 90, 204
Tru9I TTAA 2 cut(s) 90, 204
TscAI CASTG 5 cut(s) 169, 631, 826, 910, 1097
TseI GCWGC 3 cut(s) 155, 243, 1014
TspDTI ATGAA 1 cut(s) 173
TspGWI ACGGA 3 cut(s) 224, 482, 677
TspRI CASTG 5 cut(s) 169, 631, 826, 910, 1097
Tth111I GACNNNGTC 1 cut(s) 383
Vha464I CTTAAG 1 cut(s) 203
VpaK11BI GGWCC 3 cut(s) 385, 601, 796
XceI RCATGY 1 cut(s) 243
XmiI GTMKAC 2 cut(s) 575, 770
XspI CTAG 2 cut(s) 179, 1108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.