Rh7DG073600

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0001041
Physical Location & Seq
Reverse (-)
5682369 .. 5685112
2744 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG073600.1

Sequence Viewer

Length: 552 bp
ATGAGCATTTTGCTTCAAGTTCTCAAAATGTCGTTAACAAGGTCAAGGACAAACAAGATAGAAAATCGTTTTCCCAGCTCTGCAAGCAATGGCTTAAAGTCCAAGGTCCTGGTTTTGATTAACAGCTGTATATCGGACGAAGCCCTCAGAGTAATTGGCTCCACATCTTCCATCAGCATTTTAAAGTTAAGACGTTGTTATAACGTTACTGATGAGGGATTGGCTTTTTTGGCGAATGGATCTACCTCGAAAACCCTCAAGAAATTGGTCCTTGCGAGGTGCCCTCTTATCACTGATACAGGGGTCAAGCTTTTGGGCAAAATGTGTAGCTTGGAGCACCTGAAATTGTCTTATGAGGGAGAAGTCAGTCAAATCACTGATATTGGAGGTGTGGGAATTTCTGCAATTCGAACCCTCAGGGAATTGATATTGAATTATGTGAACCTGTCGGACCCTACCATGGCCGCTCTTGCACAGAATTGCCGCAACTTGGAAATGCTTGATTTAGGGGGTTGTGAAAGGGTAACCGGAGCTGGCATTCGTGCGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

183

Amino Acids

19.81

Weight (kDa)

9.38

Isoelectric Point (pI)

32.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7885 PF25372 5 - 110 1.8e-07 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 201
AccB1I GGYRCC 1 cut(s) 279
AccBSI CCGCTC 1 cut(s) 467
AciI CCGC 2 cut(s) 465, 484
AclI AACGTT 1 cut(s) 204
AclWI GGATC 1 cut(s) 247
AcoI YGGCCR 1 cut(s) 462
AcsI RAATTY 1 cut(s) 396
AfiI CCNNNNNNNGG 2 cut(s) 460, 490
AgsI TTSAA 2 cut(s) 17, 433
AjnI CCWGG 1 cut(s) 108
AluBI AGCT 5 cut(s) 78, 126, 310, 330, 533
AluI AGCT 5 cut(s) 78, 126, 310, 330, 533
Alw21I GWGCWC 1 cut(s) 339
AlwI GGATC 1 cut(s) 247
AoxI GGCC 1 cut(s) 462
ApoI RAATTY 1 cut(s) 396
AspS9I GGNCC 3 cut(s) 106, 268, 451
AsuII TTCGAA 1 cut(s) 409
AvaII GGWCC 3 cut(s) 106, 268, 451
AxyI CCTNAGG 1 cut(s) 416
BaeGI GKGCMC 1 cut(s) 284
BaeI ACNNNNGTAYC 2 cut(s) 288, 321
BanI GGYRCC 1 cut(s) 279
Bbv12I GWGCWC 1 cut(s) 339
BccI CCATC 1 cut(s) 179
BciT130I CCWGG 1 cut(s) 110
BisI GCNGC 2 cut(s) 465, 484
BlsI GCNGC 2 cut(s) 466, 485
Bme1390I CCNGG 1 cut(s) 110
Bme18I GGWCC 3 cut(s) 106, 268, 451
BmgT120I GGNCC 3 cut(s) 106, 268, 451
BmiI GGNNCC 3 cut(s) 160, 281, 453
BmrFI CCNGG 1 cut(s) 110
BplI GAGNNNNNCTC 2 cut(s) 268, 300
Bpu14I TTCGAA 1 cut(s) 409
BpuEI CTTGAG 1 cut(s) 242
BsaJI CCNNGG 2 cut(s) 102, 459
BsaWI WCCGGW 1 cut(s) 527
Bsc4I CCNNNNNNNGG 2 cut(s) 460, 490
Bse21I CCTNAGG 1 cut(s) 416
Bse3DI GCAATG 1 cut(s) 94
BseBI CCWGG 1 cut(s) 110
BseDI CCNNGG 2 cut(s) 102, 459
BseLI CCNNNNNNNGG 2 cut(s) 460, 490
BseMI GCAATG 1 cut(s) 94
BseMII CTCAG 2 cut(s) 160, 430
BseSI GKGCMC 1 cut(s) 284
BseYI CCCAGC 1 cut(s) 74
BshFI GGCC 1 cut(s) 464
BshNI GGYRCC 1 cut(s) 279
BsiHKAI GWGCWC 1 cut(s) 339
BsiSI CCGG 1 cut(s) 528
BslI CCNNNNNNNGG 2 cut(s) 460, 490
BsmI GAATGC 1 cut(s) 537
BsnI GGCC 1 cut(s) 464
Bsp119I TTCGAA 1 cut(s) 409
Bsp1286I GDGCHC 2 cut(s) 284, 339
Bsp143I GATC 1 cut(s) 239
Bsp19I CCATGG 1 cut(s) 459
BspACI CCGC 2 cut(s) 465, 484
BspANI GGCC 1 cut(s) 464
BspCNI CTCAG 2 cut(s) 159, 429
BspLI GGNNCC 3 cut(s) 160, 281, 453
BspPI GGATC 1 cut(s) 247
BspT104I TTCGAA 1 cut(s) 409
BspT107I GGYRCC 1 cut(s) 279
BsrBI CCGCTC 1 cut(s) 467
BsrDI GCAATG 1 cut(s) 94
BssECI CCNNGG 2 cut(s) 102, 459
BssMI GATC 1 cut(s) 239
BssT1I CCWWGG 2 cut(s) 102, 459
Bst2UI CCWGG 1 cut(s) 110
BstBI TTCGAA 1 cut(s) 409
BstC8I GCNNGC 2 cut(s) 85, 535
BstDEI CTNAG 2 cut(s) 146, 416
BstDSI CCRYGG 1 cut(s) 459
BstEII GGTNACC 1 cut(s) 523
BstKTI GATC 1 cut(s) 242
BstMBI GATC 1 cut(s) 239
BstMWI GCNNNNNNNGC 3 cut(s) 84, 230, 470
BstNI CCWGG 1 cut(s) 110
BstPI GGTNACC 1 cut(s) 523
BstSCI CCNGG 1 cut(s) 108
BstSLI GKGCMC 1 cut(s) 284
BstX2I RGATCY 1 cut(s) 239
BstXI CCANNNNNNTGG 1 cut(s) 109
BstYI RGATCY 1 cut(s) 239
Bsu36I CCTNAGG 1 cut(s) 416
BsuRI GGCC 1 cut(s) 464
BtgI CCRYGG 1 cut(s) 459
BtsIMutI CAGTG 2 cut(s) 291, 375
Cac8I GCNNGC 2 cut(s) 85, 535
Cfr13I GGNCC 3 cut(s) 106, 268, 451
CviAII CATG 1 cut(s) 460
DdeI CTNAG 2 cut(s) 146, 416
DpnI GATC 1 cut(s) 241
DpnII GATC 1 cut(s) 239
DraI TTTAAA 1 cut(s) 183
EaeI YGGCCR 1 cut(s) 462
Eco130I CCWWGG 2 cut(s) 102, 459
Eco47I GGWCC 3 cut(s) 106, 268, 451
Eco81I CCTNAGG 1 cut(s) 416
Eco91I GGTNACC 1 cut(s) 523
EcoO109I RGGNCCY 1 cut(s) 106
EcoO65I GGTNACC 1 cut(s) 523
EcoRII CCWGG 1 cut(s) 108
EcoT14I CCWWGG 2 cut(s) 102, 459
ErhI CCWWGG 2 cut(s) 102, 459
FaeI CATG 1 cut(s) 463
FaiI YATR 5 cut(s) 131, 201, 354, 438, 461
FatI CATG 1 cut(s) 459
Fnu4HI GCNGC 2 cut(s) 465, 484
Fsp4HI GCNGC 2 cut(s) 465, 484
GluI GCNGC 2 cut(s) 465, 484
GsaI CCCAGC 1 cut(s) 78
HaeIII GGCC 1 cut(s) 464
HapII CCGG 1 cut(s) 528
Hin1II CATG 1 cut(s) 463
HincII GTYRAC 1 cut(s) 36
HindII GTYRAC 1 cut(s) 36
HindIII AAGCTT 1 cut(s) 308
HpaI GTTAAC 1 cut(s) 36
HpaII CCGG 1 cut(s) 528
Hpy166II GTNNAC 2 cut(s) 36, 442
Hpy188I TCNGA 3 cut(s) 136, 149, 451
Hpy188III TCNNGA 1 cut(s) 259
Hpy8I GTNNAC 2 cut(s) 36, 442
HpyCH4IV ACGT 2 cut(s) 193, 204
HpyCH4V TGCA 3 cut(s) 83, 404, 473
HpyF10VI GCNNNNNNNGC 3 cut(s) 84, 230, 470
HpyF3I CTNAG 2 cut(s) 146, 416
HpySE526I ACGT 2 cut(s) 193, 204
Hsp92II CATG 1 cut(s) 463
KspAI GTTAAC 1 cut(s) 36
Kzo9I GATC 1 cut(s) 239
LmnI GCTCC 3 cut(s) 164, 334, 530
LpnPI CCDG 9 cut(s) 88, 95, 122, 285, 353, 403, 458, 519, 541
MaeII ACGT 2 cut(s) 193, 204
MaeIII GTNAC 2 cut(s) 205, 523
MalI GATC 1 cut(s) 241
MbiI CCGCTC 1 cut(s) 467
MboI GATC 1 cut(s) 239
MboII GAAGA 1 cut(s) 159
MflI RGATCY 1 cut(s) 239
MhlI GDGCHC 2 cut(s) 284, 339
MluCI AATT 8 cut(s) 153, 263, 344, 396, 405, 422, 433, 478
MmeI TCCRAC 1 cut(s) 429
MnlI CCTC 9 cut(s) 155, 208, 256, 266, 270, 294, 349, 380, 425
MseI TTAA 5 cut(s) 35, 95, 120, 182, 188
MspA1I CMGCKG 1 cut(s) 126
MspI CCGG 1 cut(s) 528
MspR9I CCNGG 1 cut(s) 110
Mva1269I GAATGC 1 cut(s) 537
MvaI CCWGG 1 cut(s) 110
MwoI GCNNNNNNNGC 3 cut(s) 84, 230, 470
NcoI CCATGG 1 cut(s) 459
NdeII GATC 1 cut(s) 239
NlaIII CATG 1 cut(s) 463
NlaIV GGNNCC 3 cut(s) 160, 281, 453
NspV TTCGAA 1 cut(s) 409
PctI GAATGC 1 cut(s) 537
PkrI GCNGC 2 cut(s) 466, 485
PpuMI RGGWCCY 1 cut(s) 106
PsiI TTATAA 1 cut(s) 201
Psp1406I AACGTT 1 cut(s) 204
Psp5II RGGWCCY 1 cut(s) 106
Psp6I CCWGG 1 cut(s) 108
PspEI GGTNACC 1 cut(s) 523
PspFI CCCAGC 1 cut(s) 74
PspGI CCWGG 1 cut(s) 108
PspN4I GGNNCC 3 cut(s) 160, 281, 453
PspPI GGNCC 3 cut(s) 106, 268, 451
PspPPI RGGWCCY 1 cut(s) 106
PsuI RGATCY 1 cut(s) 239
PvuII CAGCTG 1 cut(s) 126
SaqAI TTAA 5 cut(s) 35, 95, 120, 182, 188
SatI GCNGC 2 cut(s) 465, 484
Sau3AI GATC 1 cut(s) 239
Sau96I GGNCC 3 cut(s) 106, 268, 451
ScrFI CCNGG 1 cut(s) 110
SduI GDGCHC 2 cut(s) 284, 339
SfuI TTCGAA 1 cut(s) 409
SinI GGWCC 3 cut(s) 106, 268, 451
SmlI CTYRAG 1 cut(s) 257
SmoI CTYRAG 1 cut(s) 257
Sse9I AATT 8 cut(s) 153, 263, 344, 396, 405, 422, 433, 478
SsiI CCGC 2 cut(s) 465, 484
StyD4I CCNGG 1 cut(s) 108
StyI CCWWGG 2 cut(s) 102, 459
TaiI ACGT 2 cut(s) 196, 207
TaqI TCGA 2 cut(s) 248, 409
TasI AATT 8 cut(s) 153, 263, 344, 396, 405, 422, 433, 478
TauI GCSGC 2 cut(s) 467, 486
Tru1I TTAA 5 cut(s) 35, 95, 120, 182, 188
Tru9I TTAA 5 cut(s) 35, 95, 120, 182, 188
TscAI CASTG 2 cut(s) 298, 382
TspRI CASTG 2 cut(s) 298, 382
VpaK11BI GGWCC 3 cut(s) 106, 268, 451
XapI RAATTY 1 cut(s) 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.