Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001041

Physical Location & Seq

Genomic Coordinates Reverse (-)

48020135 .. 48020680

Gene Structure 546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG354600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGATCTACCTCAAAAACCCTTAAGAAATTCGTCCTTTATACTTGCCCTAAAATCACTAATGCTGGGGTCGAGCTTTTGGGAAAATGTGCAGCTTGGAGCGCCTGGAATTGTCCTCTGGGGGAGATATAGTCAAATCACTGATATTGGAGGTGTGGCAATGTCTGCAATTCGAACCCTCAAGGAATTGAGATTGAATCATCTAAACGTGTCAGACCCTACCATAGTCGCTCTTGCACAGAATTGCCGCAACTTGGAAATACTTGATATAGGGGGTTCTGAAAGGGTAACTAGAGCTGGCATTTGTGCATTTTGCAGTCATAAGTGCTTGAAATGCCTTGAATTGCACGAGTTAAATATCAATCTTTCTGATGTGGAACGGATAGTGCTTGGATGCCCTTCATTGGATTCTGTTGTCGTGGATTCACGTAGGAGGCTTGATCTAACTTGGAGCGATCAATTGATGCATGACAAAACTAGAAGAGTTGTTAAGTATGTTGTAAGTTATGCTCTTGATATGTATTTGCAGGACTTTTATGTTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_6

Protein Analysis

181

Amino Acids

20.39

Weight (kDa)

7.62

Isoelectric Point (pI)

51.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001041)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40700 FvH4_5g10370 FvH4_5g12160 FvH4_5g12180 FvH4_5g12190 FvH4_5g12200 FvH4_5g12210 FvH4_5g12211
rosa_chinensis	RchiOBHm_Chr5g0073461 RchiOBHm_Chr5g0073471 RchiOBHm_Chr7g0185341 RchiOBHm_Chr7g0185381 RchiOBHm_Chr7g0185401
rosa_laevigata	RLG00000004916 RLG00000004917 RLG00000004921 RLG00000019401 RLG00000036387
rosa_multiflora	Rmu_co8366929.1_g000001 Rmu_co8392105.1_g000001 Rmu_sc0001761.1_g000011 Rmu_sc0001761.1_g000012 Rmu_sc0001761.1_g000013 Rmu_sc0001761.1_g000016 Rmu_sc0004670.1_g000010 Rmu_sc0008496.1_g000005 Rmu_sc0023242.1_g000005 Rmu_sc0023242.1_g000006 Rmu_ssc0000226.1_g000026 Rmu_ssc0000226.1_g000027
rosa_roxburghii	Rroxscaffold_1G00007790 Rroxscaffold_1G00017220 Rroxscaffold_2G00110040 Rroxscaffold_3G00269000 Rroxscaffold_3G00269010
rosa_rugosa	Rorug05G0423700 Rorug06G0468100 Rorug06G0468700
rosa_samantha	Rh2CG354600 Rh2CG354700 Rh2DG393800 Rh5AG481000 Rh5CG455400 Rh5CG524900 Rh5DG514100 Rh7AG074000 Rh7AG074100 Rh7AG074200 Rh7AG074600 Rh7BG072600 Rh7BG073200 Rh7BG073300 Rh7BG073400 Rh7DG073200 Rh7DG073600 Rh7DG073700 Rh7DG073800
rosa_wichuraiana	Rw2G030200 Rw7G006080 Rw7G006120 Rw7G006130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	247
AclWI	GGATC	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	28
AfiI	CCNNNNNNNGG	2 cut(s)	253, 403
AflII	CTTAAG	1 cut(s)	22
AflIII	ACRYGT	1 cut(s)	207
AgsI	TTSAA	3 cut(s)	196, 331, 341
AjnI	CCWGG	1 cut(s)	103
AluBI	AGCT	3 cut(s)	75, 94, 296
AluI	AGCT	3 cut(s)	75, 94, 296
AlwI	GGATC	1 cut(s)	12
ApeKI	GCWGC	1 cut(s)	91
ApoI	RAATTY	1 cut(s)	28
AspLEI	GCGC	1 cut(s)	103
AsuII	TTCGAA	1 cut(s)	172
BauI	CACGAG	1 cut(s)	347
BbvI	GCAGC	1 cut(s)	103
BciT130I	CCWGG	1 cut(s)	105
BfaI	CTAG	2 cut(s)	291, 477
BfoI	RGCGCY	1 cut(s)	104
BfrI	CTTAAG	1 cut(s)	22
BisI	GCNGC	2 cut(s)	92, 247
BlsI	GCNGC	2 cut(s)	93, 248
Bme1390I	CCNGG	1 cut(s)	105
BmrFI	CCNGG	1 cut(s)	105
BmsI	GCATC	2 cut(s)	383, 453
Bpu14I	TTCGAA	1 cut(s)	172
BpuEI	CTTGAG	1 cut(s)	164
BsaAI	YACGTR	1 cut(s)	428
BsaXI	ACNNNNNCTCC	2 cut(s)	115, 145
Bsc4I	CCNNNNNNNGG	2 cut(s)	253, 403
Bse3DI	GCAATG	1 cut(s)	165
BseBI	CCWGG	1 cut(s)	105
BseGI	GGATG	1 cut(s)	398
BseLI	CCNNNNNNNGG	2 cut(s)	253, 403
BseMI	GCAATG	1 cut(s)	165
BseXI	GCAGC	1 cut(s)	103
BseYI	CCCAGC	1 cut(s)	64
BsgI	GTGCAG	1 cut(s)	110
BslI	CCNNNNNNNGG	2 cut(s)	253, 403
Bsp119I	TTCGAA	1 cut(s)	172
Bsp143I	GATC	3 cut(s)	4, 439, 454
BspACI	CCGC	1 cut(s)	247
BspPI	GGATC	1 cut(s)	12
BspT104I	TTCGAA	1 cut(s)	172
BspTI	CTTAAG	1 cut(s)	22
BsrDI	GCAATG	1 cut(s)	165
BssMI	GATC	3 cut(s)	4, 439, 454
BssSI	CACGAG	1 cut(s)	347
Bst2BI	CACGAG	1 cut(s)	347
Bst2UI	CCWGG	1 cut(s)	105
Bst6I	CTCTTC	1 cut(s)	475
BstAFI	CTTAAG	1 cut(s)	22
BstAPI	GCANNNNNTGC	1 cut(s)	164
BstBAI	YACGTR	1 cut(s)	428
BstBI	TTCGAA	1 cut(s)	172
BstC8I	GCNNGC	1 cut(s)	298
BstF5I	GGATG	1 cut(s)	398
BstH2I	RGCGCY	1 cut(s)	104
BstHHI	GCGC	1 cut(s)	103
BstKTI	GATC	3 cut(s)	7, 442, 457
BstMBI	GATC	3 cut(s)	4, 439, 454
BstMWI	GCNNNNNNNGC	3 cut(s)	100, 164, 333
BstNI	CCWGG	1 cut(s)	105
BstSCI	CCNGG	1 cut(s)	103
BstV1I	GCAGC	1 cut(s)	103
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BtsCI	GGATG	1 cut(s)	398
BtsIMutI	CAGTG	1 cut(s)	138
Cac8I	GCNNGC	1 cut(s)	298
CfoI	GCGC	1 cut(s)	103
CviAII	CATG	1 cut(s)	467
CviJI	RGCY	4 cut(s)	75, 94, 296, 436
CviKI_1	RGCY	4 cut(s)	75, 94, 296, 436
DpnI	GATC	3 cut(s)	6, 441, 456
DpnII	GATC	3 cut(s)	4, 439, 454
Eam1104I	CTCTTC	1 cut(s)	475
EarI	CTCTTC	1 cut(s)	475
EcoRII	CCWGG	1 cut(s)	103
EcoT22I	ATGCAT	1 cut(s)	468
FaeI	CATG	1 cut(s)	470
FatI	CATG	1 cut(s)	466
Fnu4HI	GCNGC	2 cut(s)	92, 247
FokI	GGATG	1 cut(s)	405
Fsp4HI	GCNGC	2 cut(s)	92, 247
FspBI	CTAG	2 cut(s)	291, 477
GlaI	GCGC	1 cut(s)	102
GluI	GCNGC	2 cut(s)	92, 247
GsaI	CCCAGC	1 cut(s)	68
HaeII	RGCGCY	1 cut(s)	104
HhaI	GCGC	1 cut(s)	103
Hin1II	CATG	1 cut(s)	470
Hin6I	GCGC	1 cut(s)	101
HinP1I	GCGC	1 cut(s)	101
HinfI	GANTC	3 cut(s)	196, 407, 422
Hpy188I	TCNGA	3 cut(s)	214, 280, 370
Hpy188III	TCNNGA	1 cut(s)	512
HpyAV	CCTTC	1 cut(s)	408
HpyCH4IV	ACGT	2 cut(s)	207, 427
HpyCH4V	TGCA	8 cut(s)	91, 167, 236, 308, 315, 346, 466, 526
HpyF10VI	GCNNNNNNNGC	3 cut(s)	100, 164, 333
HpySE526I	ACGT	2 cut(s)	207, 427
Hsp92II	CATG	1 cut(s)	470
HspAI	GCGC	1 cut(s)	101
Kzo9I	GATC	3 cut(s)	4, 439, 454
LmnI	GCTCC	2 cut(s)	98, 450
LpnPI	CCDG	6 cut(s)	50, 90, 103, 117, 282, 512
Lsp1109I	GCAGC	1 cut(s)	103
LweI	GCATC	2 cut(s)	383, 453
MaeI	CTAG	2 cut(s)	291, 477
MaeII	ACGT	2 cut(s)	207, 427
MaeIII	GTNAC	1 cut(s)	286
MalI	GATC	3 cut(s)	6, 441, 456
MboI	GATC	3 cut(s)	4, 439, 454
MboII	GAAGA	1 cut(s)	492
MfeI	CAATTG	1 cut(s)	458
MflI	RGATCY	1 cut(s)	4
MluCI	AATT	7 cut(s)	28, 108, 168, 185, 241, 341, 458
MnlI	CCTC	5 cut(s)	21, 125, 143, 188, 426
Mph1103I	ATGCAT	1 cut(s)	468
MseI	TTAA	3 cut(s)	23, 353, 489
MspCI	CTTAAG	1 cut(s)	22
MspR9I	CCNGG	1 cut(s)	105
MunI	CAATTG	1 cut(s)	458
MvaI	CCWGG	1 cut(s)	105
MwoI	GCNNNNNNNGC	3 cut(s)	100, 164, 333
NdeII	GATC	3 cut(s)	4, 439, 454
NlaIII	CATG	1 cut(s)	470
NsiI	ATGCAT	1 cut(s)	468
NspV	TTCGAA	1 cut(s)	172
PfeI	GAWTC	3 cut(s)	196, 407, 422
PkrI	GCNGC	2 cut(s)	93, 248
Ppu21I	YACGTR	1 cut(s)	428
Psp6I	CCWGG	1 cut(s)	103
PspFI	CCCAGC	1 cut(s)	64
PspGI	CCWGG	1 cut(s)	103
PsuI	RGATCY	1 cut(s)	4
SaqAI	TTAA	3 cut(s)	23, 353, 489
SatI	GCNGC	2 cut(s)	92, 247
Sau3AI	GATC	3 cut(s)	4, 439, 454
ScrFI	CCNGG	1 cut(s)	105
SetI	ASST	7 cut(s)	13, 77, 96, 154, 210, 298, 430
SfaNI	GCATC	2 cut(s)	383, 453
SfuI	TTCGAA	1 cut(s)	172
SmlI	CTYRAG	2 cut(s)	22, 179
SmoI	CTYRAG	2 cut(s)	22, 179
Sse9I	AATT	7 cut(s)	28, 108, 168, 185, 241, 341, 458
SsiI	CCGC	1 cut(s)	247
SspMI	CTAG	2 cut(s)	291, 477
StyD4I	CCNGG	1 cut(s)	103
TaiI	ACGT	2 cut(s)	210, 430
TaqI	TCGA	2 cut(s)	71, 172
TasI	AATT	7 cut(s)	28, 108, 168, 185, 241, 341, 458
TauI	GCSGC	1 cut(s)	249
TfiI	GAWTC	3 cut(s)	196, 407, 422
Tru1I	TTAA	3 cut(s)	23, 353, 489
Tru9I	TTAA	3 cut(s)	23, 353, 489
TscAI	CASTG	1 cut(s)	145
TseI	GCWGC	1 cut(s)	91
TspDTI	ATGAA	1 cut(s)	390
TspGWI	ACGGA	1 cut(s)	394
TspRI	CASTG	1 cut(s)	145
Vha464I	CTTAAG	1 cut(s)	22
XapI	RAATTY	1 cut(s)	28
XspI	CTAG	2 cut(s)	291, 477
Zsp2I	ATGCAT	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.