FvH4_5g12211

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0001041
Physical Location & Seq
Forward (+)
6870180 .. 6871632
1453 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g12211.t1

Sequence Viewer

Length: 513 bp
ATGGTCGCTCTTGCACAGAATTGCCGCAACTTGGAGATACTTGATATAGGGCGTTGTGACAAGGTAACTGGAGCTGGCATATGTGCATTTTGCAGTCACAAGTGCTTGAAACGCCTTAAATTGGACGAGTTAAAGATCAATCTTTCTGATGTGGAACGCGTAGTGTTTGGATGCCCGTCATTGGATTCTGTTGTGGTGGATTCACGCAGGAGGTCTGATCCAACTTGGAGCGATGAATTGATGCAAGACAGAACTAGAAAAGTTGTTAAATTGATATGTATGGACCTGTACTATACCATGGCCGCCCTTGCCGAGAATTGCAGCAACTTGGAAACACTTGATTTGGTATCCTGTCGGGTAACCGGAGCTGGCATTCGTGCATTTTCAGGTCATAAATGGTTGAAGCTCCTTACAGTGATGTGTGGAGACAACTTTGATCAATCAGATGTGGAATGCGTAGCGCTTCGATGCCCTTCATTGAAGTCTGGACGAGTCGTTAGAAAGGAGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

171

Amino Acids

19.03

Weight (kDa)

8.26

Isoelectric Point (pI)

36.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 159
AciI CCGC 2 cut(s) 25, 303
AclWI GGATC 1 cut(s) 212
AcoI YGGCCR 1 cut(s) 300
AfaI GTAC 1 cut(s) 290
AfeI AGCGCT 1 cut(s) 462
AfiI CCNNNNNNNGG 3 cut(s) 31, 121, 181
AflIII ACRYGT 1 cut(s) 157
AgsI TTSAA 3 cut(s) 109, 403, 481
AluBI AGCT 3 cut(s) 74, 368, 406
AluI AGCT 3 cut(s) 74, 368, 406
Alw26I GTCTC 1 cut(s) 420
AlwI GGATC 1 cut(s) 212
Aor51HI AGCGCT 1 cut(s) 462
AoxI GGCC 1 cut(s) 300
ApeKI GCWGC 1 cut(s) 321
AspLEI GCGC 1 cut(s) 463
AspS9I GGNCC 1 cut(s) 283
AvaII GGWCC 1 cut(s) 283
BbvI GCAGC 1 cut(s) 333
BciVI GTATCC 1 cut(s) 358
BclI TGATCA 1 cut(s) 436
BcoDI GTCTC 1 cut(s) 420
BfaI CTAG 1 cut(s) 255
BfoI RGCGCY 1 cut(s) 464
BfuI GTATCC 1 cut(s) 358
BisI GCNGC 3 cut(s) 25, 303, 322
BlsI GCNGC 3 cut(s) 26, 304, 323
Bme18I GGWCC 1 cut(s) 283
BmgT120I GGNCC 1 cut(s) 283
BmsI GCATC 3 cut(s) 161, 231, 458
BpmI CTGGAG 1 cut(s) 90
BsaJI CCNNGG 1 cut(s) 297
BsaWI WCCGGW 1 cut(s) 362
Bsc4I CCNNNNNNNGG 3 cut(s) 31, 121, 181
Bse1I ACTGG 1 cut(s) 73
BseDI CCNNGG 1 cut(s) 297
BseGI GGATG 1 cut(s) 176
BseLI CCNNNNNNNGG 3 cut(s) 31, 121, 181
BseNI ACTGG 1 cut(s) 73
BseXI GCAGC 1 cut(s) 333
Bsh1236I CGCG 1 cut(s) 159
BshFI GGCC 1 cut(s) 302
BsiSI CCGG 1 cut(s) 363
BslI CCNNNNNNNGG 3 cut(s) 31, 121, 181
BsmAI GTCTC 1 cut(s) 420
BsmI GAATGC 2 cut(s) 372, 458
BsnI GGCC 1 cut(s) 302
Bsp143I GATC 3 cut(s) 135, 217, 436
Bsp19I CCATGG 1 cut(s) 297
BspACI CCGC 2 cut(s) 25, 303
BspANI GGCC 1 cut(s) 302
BspFNI CGCG 1 cut(s) 159
BspPI GGATC 1 cut(s) 212
BsrI ACTGG 1 cut(s) 73
BssECI CCNNGG 1 cut(s) 297
BssMI GATC 3 cut(s) 135, 217, 436
BssT1I CCWWGG 1 cut(s) 297
Bst4CI ACNGT 1 cut(s) 415
BstC8I GCNNGC 2 cut(s) 76, 370
BstDSI CCRYGG 1 cut(s) 297
BstEII GGTNACC 1 cut(s) 358
BstF5I GGATG 1 cut(s) 176
BstFNI CGCG 1 cut(s) 159
BstH2I RGCGCY 1 cut(s) 464
BstHHI GCGC 1 cut(s) 463
BstKTI GATC 3 cut(s) 138, 220, 439
BstMAI GTCTC 1 cut(s) 420
BstMBI GATC 3 cut(s) 135, 217, 436
BstMWI GCNNNNNNNGC 2 cut(s) 111, 308
BstPI GGTNACC 1 cut(s) 358
BstUI CGCG 1 cut(s) 159
BstV1I GCAGC 1 cut(s) 333
BsuI GTATCC 1 cut(s) 358
BsuRI GGCC 1 cut(s) 302
BtgI CCRYGG 1 cut(s) 297
BtgZI GCGATG 1 cut(s) 246
BtsCI GGATG 1 cut(s) 176
BtsIMutI CAGTG 1 cut(s) 420
Cac8I GCNNGC 2 cut(s) 76, 370
CfoI GCGC 1 cut(s) 463
Cfr13I GGNCC 1 cut(s) 283
Csp6I GTAC 1 cut(s) 289
CviAII CATG 1 cut(s) 298
CviJI RGCY 4 cut(s) 74, 302, 368, 406
CviKI_1 RGCY 4 cut(s) 74, 302, 368, 406
CviQI GTAC 1 cut(s) 289
DpnI GATC 3 cut(s) 137, 219, 438
DpnII GATC 3 cut(s) 135, 217, 436
EaeI YGGCCR 1 cut(s) 300
Eco130I CCWWGG 1 cut(s) 297
Eco47I GGWCC 1 cut(s) 283
Eco47III AGCGCT 1 cut(s) 462
Eco91I GGTNACC 1 cut(s) 358
EcoO65I GGTNACC 1 cut(s) 358
EcoT14I CCWWGG 1 cut(s) 297
ErhI CCWWGG 1 cut(s) 297
FaeI CATG 1 cut(s) 301
FaiI YATR 8 cut(s) 47, 80, 82, 277, 281, 294, 299, 393
FatI CATG 1 cut(s) 297
FauNDI CATATG 1 cut(s) 80
FbaI TGATCA 1 cut(s) 436
Fnu4HI GCNGC 3 cut(s) 25, 303, 322
FokI GGATG 1 cut(s) 183
Fsp4HI GCNGC 3 cut(s) 25, 303, 322
FspBI CTAG 1 cut(s) 255
GlaI GCGC 1 cut(s) 462
GluI GCNGC 3 cut(s) 25, 303, 322
GsuI CTGGAG 1 cut(s) 90
HaeII RGCGCY 1 cut(s) 464
HaeIII GGCC 1 cut(s) 302
HapII CCGG 1 cut(s) 363
HhaI GCGC 1 cut(s) 463
Hin1II CATG 1 cut(s) 301
Hin6I GCGC 1 cut(s) 461
HinP1I GCGC 1 cut(s) 461
HinfI GANTC 3 cut(s) 185, 200, 492
HpaII CCGG 1 cut(s) 363
Hpy188I TCNGA 3 cut(s) 148, 217, 445
Hpy188III TCNNGA 1 cut(s) 486
HpyAV CCTTC 1 cut(s) 483
HpyCH4III ACNGT 1 cut(s) 415
HpyCH4V TGCA 6 cut(s) 14, 86, 93, 244, 321, 380
HpyF10VI GCNNNNNNNGC 2 cut(s) 111, 308
Hsp92II CATG 1 cut(s) 301
HspAI GCGC 1 cut(s) 461
Ksp22I TGATCA 1 cut(s) 436
Kzo9I GATC 3 cut(s) 135, 217, 436
LmnI GCTCC 4 cut(s) 71, 228, 365, 411
LpnPI CCDG 9 cut(s) 54, 60, 193, 299, 354, 364, 372, 376, 471
Lsp1109I GCAGC 1 cut(s) 333
LweI GCATC 3 cut(s) 161, 231, 458
MaeI CTAG 1 cut(s) 255
MaeIII GTNAC 4 cut(s) 56, 64, 95, 358
MalI GATC 3 cut(s) 137, 219, 438
MboI GATC 3 cut(s) 135, 217, 436
MluCI AATT 5 cut(s) 19, 119, 236, 269, 316
MluI ACGCGT 1 cut(s) 157
MlyI GAGTC 1 cut(s) 501
MmeI TCCRAC 1 cut(s) 245
MnlI CCTC 1 cut(s) 204
MseI TTAA 3 cut(s) 117, 131, 267
MspI CCGG 1 cut(s) 363
Mva1269I GAATGC 2 cut(s) 372, 458
MvnI CGCG 1 cut(s) 159
MwoI GCNNNNNNNGC 2 cut(s) 111, 308
NcoI CCATGG 1 cut(s) 297
NdeI CATATG 1 cut(s) 80
NdeII GATC 3 cut(s) 135, 217, 436
NlaIII CATG 1 cut(s) 301
NmeAIII GCCGAG 1 cut(s) 337
NmuCI GTSAC 2 cut(s) 56, 95
PctI GAATGC 2 cut(s) 372, 458
PfeI GAWTC 2 cut(s) 185, 200
PkrI GCNGC 3 cut(s) 26, 304, 323
PleI GAGTC 1 cut(s) 500
PpsI GAGTC 1 cut(s) 500
PspEI GGTNACC 1 cut(s) 358
PspPI GGNCC 1 cut(s) 283
RsaI GTAC 1 cut(s) 290
RsaNI GTAC 1 cut(s) 289
SaqAI TTAA 3 cut(s) 117, 131, 267
SatI GCNGC 3 cut(s) 25, 303, 322
Sau3AI GATC 3 cut(s) 135, 217, 436
Sau96I GGNCC 1 cut(s) 283
SchI GAGTC 1 cut(s) 501
SetI ASST 7 cut(s) 66, 76, 215, 288, 370, 391, 408
SfaNI GCATC 3 cut(s) 161, 231, 458
SinI GGWCC 1 cut(s) 283
Sse9I AATT 5 cut(s) 19, 119, 236, 269, 316
SsiI CCGC 2 cut(s) 25, 303
SspMI CTAG 1 cut(s) 255
StyI CCWWGG 1 cut(s) 297
TaaI ACNGT 1 cut(s) 415
TaqI TCGA 1 cut(s) 466
TasI AATT 5 cut(s) 19, 119, 236, 269, 316
TatI WGTACW 1 cut(s) 288
TauI GCSGC 2 cut(s) 27, 305
TfiI GAWTC 2 cut(s) 185, 200
Tru1I TTAA 3 cut(s) 117, 131, 267
Tru9I TTAA 3 cut(s) 117, 131, 267
TscAI CASTG 1 cut(s) 420
TseFI GTSAC 2 cut(s) 56, 95
TseI GCWGC 1 cut(s) 321
Tsp45I GTSAC 2 cut(s) 56, 95
TspDTI ATGAA 2 cut(s) 249, 465
TspRI CASTG 1 cut(s) 420
VpaK11BI GGWCC 1 cut(s) 283
XspI CTAG 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.