FvH4_3g40700

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0001041
Physical Location & Seq
Reverse (-)
34272698 .. 34273792
1095 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g40700.t1

Sequence Viewer

Length: 1095 bp
ATGTCATTTCTGAACGACGACTTAGTTGGCCAAATAGTTAACAAGGTCACCAAAGATGATAGGAAATCGTTCTCCGAGGTCTGCACGCAGTGGTTTAAAGTAGAAGGTCTTAGCCGATCATCACTTAGTGTTTGCCTTGATCGCTTCGATTTTGACCTTGGTGGTGCACTGACTAGGTTCCCAAATATAGTCGATTTGGTAGTATGGGGTTCTAGCACCACCGATACCCATCTTGAATTAATAGCCCAAAACTGTCCTAAACTTGAGAGCATTATCATCTACTGTGATGATGATCAAGGTACTGGTGATGGCATTTTGGGGGCAAAATGTCTACTTGCTTTGGGGAATGGGTGTCCAAAGTTGTCCCAAGTTAAGTTTGTGGGGAGTTTCGCAGTAGGGGATTCTGGAGTTGTGGCTCTGTTACATTCAGCTCATCACTTGAAGGCTTTGGTTGTGTTAAGAAACAGGTTGATCTCTGATGAAGCCCTCAGAGCAATTGGGTGTTCATCTTCAATTACCTTGTTGAAGTTGGTCTTGTGTGACATCACAGATGTGGGATTGGGTTTCTTGGCAAATGGTTCCGCATCAAAAGCCATCAAGGAATTGGTCCTAGCCACATACCATGGAGTCACTGATACCGGGGTTGAGCTTTTGTGCAGAATGTGTAGCTTGGAGCGTCTGGATTTGTCTTGCTGTGGGGAATTAGTCACTGACATTGGAGGTGTGGCAATCTCTACGATTCAAACCCTCAAGGAACTGCGATTGGAATCTTTGATGAGCGTGTCAGACACTACCATGGTTGCCCTTGCACAGAATTGCCGCAACTTGGAAGTACTTGAATTGCAAGAATGTTTTCGTGTAACCGGAGCGGGCATTCGTACATTTTCAGGTCATAAGGGTTTGAGACGGCTTGGATTGCTCGGACTAATCAATTTTAGTCAAGTTGATGTGGAAATCGTAGCCCTTGGATGCCCTTTGTTGGAGTCAGAATCTGTTCTTGTGGACTCATATTGGAGTCTAGATCCAACTTGGAGCTCTGAATTAATGCACGACAACACTAAAAGAGTTATCAAGTTTGTTCATTTTTATTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

365

Amino Acids

39.51

Weight (kDa)

5.22

Isoelectric Point (pI)

29.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7885 PF25372 111 - 244 3.9e-09 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 869
AccI GTMKAC 1 cut(s) 331
AciI CCGC 3 cut(s) 582, 820, 869
AclWI GGATC 1 cut(s) 1016
AcoI YGGCCR 1 cut(s) 28
AdeI CACNNNGTG 2 cut(s) 90, 128
AfaI GTAC 3 cut(s) 301, 834, 880
AfiI CCNNNNNNNGG 2 cut(s) 826, 979
AgsI TTSAA 6 cut(s) 236, 442, 513, 526, 743, 839
AleI CACNNNNGTG 1 cut(s) 551
AluBI AGCT 4 cut(s) 431, 649, 669, 1035
AluI AGCT 4 cut(s) 431, 649, 669, 1035
Alw21I GWGCWC 2 cut(s) 169, 1037
Alw26I GTCTC 1 cut(s) 898
Alw44I GTGCAC 1 cut(s) 165
AlwI GGATC 1 cut(s) 1016
AlwNI CAGNNNCTG 1 cut(s) 992
AoxI GGCC 1 cut(s) 28
ApaLI GTGCAC 1 cut(s) 165
AseI ATTAAT 2 cut(s) 239, 1043
Asp700I GAANNNNTTC 3 cut(s) 68, 852, 993
AspS9I GGNCC 1 cut(s) 607
AsuC2I CCSGG 1 cut(s) 640
AsuHPI GGTGA 2 cut(s) 40, 317
AvaII GGWCC 1 cut(s) 607
BaeGI GKGCMC 1 cut(s) 169
BaeI ACNNNNGTAYC 2 cut(s) 627, 660
BalI TGGCCA 1 cut(s) 30
BanII GRGCYC 1 cut(s) 1037
Bbv12I GWGCWC 2 cut(s) 169, 1037
BccI CCATC 3 cut(s) 237, 302, 602
BceAI ACGGC 1 cut(s) 923
BclI TGATCA 1 cut(s) 292
BcnI CCSGG 1 cut(s) 640
BcoDI GTCTC 1 cut(s) 898
BfaI CTAG 4 cut(s) 174, 213, 611, 1019
BisI GCNGC 1 cut(s) 820
BlsI GCNGC 1 cut(s) 821
BmcAI AGTACT 1 cut(s) 834
Bme1390I CCNGG 1 cut(s) 640
Bme18I GGWCC 1 cut(s) 607
BmgT120I GGNCC 1 cut(s) 607
BmiI GGNNCC 2 cut(s) 179, 580
BmrFI CCNGG 1 cut(s) 640
BmsI GCATC 2 cut(s) 593, 959
BpmI CTGGAG 1 cut(s) 426
BpuEI CTTGAG 2 cut(s) 284, 734
BpuMI CCSGG 1 cut(s) 640
BsaBI GATNNNNATC 3 cut(s) 228, 291, 766
BsaJI CCNNGG 6 cut(s) 75, 157, 622, 639, 795, 964
BsaWI WCCGGW 1 cut(s) 863
Bsc4I CCNNNNNNNGG 2 cut(s) 826, 979
Bse1I ACTGG 1 cut(s) 307
Bse8I GATNNNNATC 3 cut(s) 228, 291, 766
BseDI CCNNGG 6 cut(s) 75, 157, 622, 639, 795, 964
BseGI GGATG 1 cut(s) 974
BseJI GATNNNNATC 3 cut(s) 228, 291, 766
BseLI CCNNNNNNNGG 2 cut(s) 826, 979
BseMII CTCAG 1 cut(s) 502
BseNI ACTGG 1 cut(s) 307
BseSI GKGCMC 1 cut(s) 169
BsgI GTGCAG 2 cut(s) 67, 676
BshFI GGCC 1 cut(s) 30
BsiHKAI GWGCWC 2 cut(s) 169, 1037
BsiSI CCGG 2 cut(s) 639, 864
BslFI GGGAC 1 cut(s) 349
BslI CCNNNNNNNGG 2 cut(s) 826, 979
BsmAI GTCTC 1 cut(s) 898
BsmBI CGTCTC 1 cut(s) 898
BsmFI GGGAC 1 cut(s) 349
BsmI GAATGC 1 cut(s) 873
BsnI GGCC 1 cut(s) 30
Bsp1286I GDGCHC 2 cut(s) 169, 1037
Bsp143I GATC 5 cut(s) 116, 139, 292, 471, 1021
Bsp19I CCATGG 2 cut(s) 622, 795
BspACI CCGC 3 cut(s) 582, 820, 869
BspANI GGCC 1 cut(s) 30
BspCNI CTCAG 1 cut(s) 501
BspLI GGNNCC 2 cut(s) 179, 580
BspPI GGATC 1 cut(s) 1016
BsrBI CCGCTC 1 cut(s) 869
BsrI ACTGG 1 cut(s) 307
BssECI CCNNGG 6 cut(s) 75, 157, 622, 639, 795, 964
BssMI GATC 5 cut(s) 116, 139, 292, 471, 1021
BssT1I CCWWGG 4 cut(s) 157, 622, 795, 964
Bst4CI ACNGT 2 cut(s) 254, 284
BstC8I GCNNGC 2 cut(s) 86, 871
BstDEI CTNAG 4 cut(s) 22, 110, 125, 488
BstDSI CCRYGG 2 cut(s) 622, 795
BstEII GGTNACC 1 cut(s) 46
BstF5I GGATG 1 cut(s) 974
BstKTI GATC 5 cut(s) 119, 142, 295, 474, 1024
BstMAI GTCTC 1 cut(s) 898
BstMBI GATC 5 cut(s) 116, 139, 292, 471, 1021
BstMWI GCNNNNNNNGC 4 cut(s) 141, 491, 590, 916
BstPI GGTNACC 1 cut(s) 46
BstSCI CCNGG 1 cut(s) 638
BstSLI GKGCMC 1 cut(s) 169
BstX2I RGATCY 1 cut(s) 1021
BstYI RGATCY 1 cut(s) 1021
BsuRI GGCC 1 cut(s) 30
BtgI CCRYGG 2 cut(s) 622, 795
BtsCI GGATG 1 cut(s) 974
BtsI GCAGTG 1 cut(s) 95
BtsIMutI CAGTG 4 cut(s) 95, 167, 630, 708
Cac8I GCNNGC 2 cut(s) 86, 871
CaiI CAGNNNCTG 1 cut(s) 992
Cfr13I GGNCC 1 cut(s) 607
CseI GACGC 1 cut(s) 665
Csp6I GTAC 3 cut(s) 300, 833, 879
CviAII CATG 2 cut(s) 623, 796
CviQI GTAC 3 cut(s) 300, 833, 879
DdeI CTNAG 4 cut(s) 22, 110, 125, 488
DpnI GATC 5 cut(s) 118, 141, 294, 473, 1023
DpnII GATC 5 cut(s) 116, 139, 292, 471, 1021
DraI TTTAAA 1 cut(s) 97
DraIII CACNNNGTG 2 cut(s) 90, 128
EaeI YGGCCR 1 cut(s) 28
Ecl136II GAGCTC 1 cut(s) 1035
Eco130I CCWWGG 4 cut(s) 157, 622, 795, 964
Eco24I GRGCYC 1 cut(s) 1037
Eco47I GGWCC 1 cut(s) 607
Eco53kI GAGCTC 1 cut(s) 1035
Eco91I GGTNACC 1 cut(s) 46
EcoICRI GAGCTC 1 cut(s) 1035
EcoO65I GGTNACC 1 cut(s) 46
EcoT14I CCWWGG 4 cut(s) 157, 622, 795, 964
EcoT38I GRGCYC 1 cut(s) 1037
ErhI CCWWGG 4 cut(s) 157, 622, 795, 964
Esp3I CGTCTC 1 cut(s) 898
FaeI CATG 2 cut(s) 626, 799
FaiI YATR 7 cut(s) 188, 205, 619, 624, 797, 894, 1009
FalI AAGNNNNNCTT 2 cut(s) 518, 550
FaqI GGGAC 1 cut(s) 349
FatI CATG 2 cut(s) 622, 795
FauI CCCGC 1 cut(s) 862
FbaI TGATCA 1 cut(s) 292
FblI GTMKAC 1 cut(s) 331
Fnu4HI GCNGC 1 cut(s) 820
FokI GGATG 1 cut(s) 981
FriOI GRGCYC 1 cut(s) 1037
Fsp4HI GCNGC 1 cut(s) 820
FspBI CTAG 4 cut(s) 174, 213, 611, 1019
GluI GCNGC 1 cut(s) 820
GsuI CTGGAG 1 cut(s) 426
HaeIII GGCC 1 cut(s) 30
HapII CCGG 2 cut(s) 639, 864
HgaI GACGC 1 cut(s) 665
Hin1II CATG 2 cut(s) 626, 799
HincII GTYRAC 1 cut(s) 40
HindII GTYRAC 1 cut(s) 40
HinfI GANTC 8 cut(s) 401, 627, 739, 767, 983, 989, 1004, 1015
HpaI GTTAAC 1 cut(s) 40
HpaII CCGG 2 cut(s) 639, 864
HphI GGTGA 2 cut(s) 40, 317
Hpy166II GTNNAC 4 cut(s) 40, 167, 332, 1003
Hpy188I TCNGA 8 cut(s) 12, 76, 478, 491, 787, 923, 988, 1039
Hpy188III TCNNGA 5 cut(s) 233, 405, 680, 1019, 1092
Hpy8I GTNNAC 4 cut(s) 40, 167, 332, 1003
Hpy99I CGWCG 1 cut(s) 20
HpyAV CCTTC 2 cut(s) 98, 436
HpyCH4III ACNGT 2 cut(s) 254, 284
HpyCH4V TGCA 6 cut(s) 84, 167, 657, 809, 844, 1048
HpyF10VI GCNNNNNNNGC 4 cut(s) 141, 491, 590, 916
HpyF3I CTNAG 4 cut(s) 22, 110, 125, 488
Hsp92II CATG 2 cut(s) 626, 799
Ksp22I TGATCA 1 cut(s) 292
KspAI GTTAAC 1 cut(s) 40
Kzo9I GATC 5 cut(s) 116, 139, 292, 471, 1021
LmnI GCTCC 3 cut(s) 673, 866, 1032
LpnPI CCDG 7 cut(s) 288, 390, 451, 652, 665, 873, 877
LweI GCATC 2 cut(s) 593, 959
MaeI CTAG 4 cut(s) 174, 213, 611, 1019
MaeIII GTNAC 6 cut(s) 46, 420, 539, 628, 706, 859
MalI GATC 5 cut(s) 118, 141, 294, 473, 1023
MbiI CCGCTC 1 cut(s) 869
MboI GATC 5 cut(s) 116, 139, 292, 471, 1021
MboII GAAGA 1 cut(s) 501
MfeI CAATTG 1 cut(s) 495
MflI RGATCY 1 cut(s) 1021
MhlI GDGCHC 2 cut(s) 169, 1037
MlsI TGGCCA 1 cut(s) 30
MluCI AATT 9 cut(s) 236, 495, 513, 602, 701, 814, 839, 931, 1040
MluNI TGGCCA 1 cut(s) 30
MlyI GAGTC 4 cut(s) 636, 992, 998, 1024
MmeI TCCRAC 2 cut(s) 960, 1049
MnlI CCTC 4 cut(s) 70, 497, 713, 758
Mox20I TGGCCA 1 cut(s) 30
MroXI GAANNNNTTC 3 cut(s) 68, 852, 993
MscI TGGCCA 1 cut(s) 30
MseI TTAA 6 cut(s) 39, 96, 239, 372, 458, 1043
MslI CAYNNNNRTG 2 cut(s) 551, 794
Msp20I TGGCCA 1 cut(s) 30
MspI CCGG 2 cut(s) 639, 864
MspR9I CCNGG 1 cut(s) 640
MunI CAATTG 1 cut(s) 495
Mva1269I GAATGC 1 cut(s) 873
MwoI GCNNNNNNNGC 4 cut(s) 141, 491, 590, 916
NciI CCSGG 1 cut(s) 640
NcoI CCATGG 2 cut(s) 622, 795
NdeII GATC 5 cut(s) 116, 139, 292, 471, 1021
NlaIII CATG 2 cut(s) 626, 799
NlaIV GGNNCC 2 cut(s) 179, 580
NmuCI GTSAC 4 cut(s) 46, 539, 628, 706
OliI CACNNNNGTG 1 cut(s) 551
PctI GAATGC 1 cut(s) 873
PdmI GAANNNNTTC 3 cut(s) 68, 852, 993
PfeI GAWTC 4 cut(s) 401, 739, 767, 989
PkrI GCNGC 1 cut(s) 821
PleI GAGTC 4 cut(s) 635, 991, 998, 1023
PpsI GAGTC 4 cut(s) 635, 991, 998, 1023
PshBI ATTAAT 2 cut(s) 239, 1043
Psp124BI GAGCTC 1 cut(s) 1037
PspEI GGTNACC 1 cut(s) 46
PspN4I GGNNCC 2 cut(s) 179, 580
PspPI GGNCC 1 cut(s) 607
PstNI CAGNNNCTG 1 cut(s) 992
PsuI RGATCY 1 cut(s) 1021
RsaI GTAC 3 cut(s) 301, 834, 880
RsaNI GTAC 3 cut(s) 300, 833, 879
RseI CAYNNNNRTG 2 cut(s) 551, 794
SacI GAGCTC 1 cut(s) 1037
SaqAI TTAA 6 cut(s) 39, 96, 239, 372, 458, 1043
SatI GCNGC 1 cut(s) 820
Sau3AI GATC 5 cut(s) 116, 139, 292, 471, 1021
Sau96I GGNCC 1 cut(s) 607
ScaI AGTACT 1 cut(s) 834
SchI GAGTC 4 cut(s) 636, 992, 998, 1024
ScrFI CCNGG 1 cut(s) 640
SduI GDGCHC 2 cut(s) 169, 1037
SfaNI GCATC 2 cut(s) 593, 959
SinI GGWCC 1 cut(s) 607
SmiMI CAYNNNNRTG 2 cut(s) 551, 794
SmlI CTYRAG 2 cut(s) 263, 749
SmoI CTYRAG 2 cut(s) 263, 749
Sse9I AATT 9 cut(s) 236, 495, 513, 602, 701, 814, 839, 931, 1040
SsiI CCGC 3 cut(s) 582, 820, 869
SspMI CTAG 4 cut(s) 174, 213, 611, 1019
SstI GAGCTC 1 cut(s) 1037
StyD4I CCNGG 1 cut(s) 638
StyI CCWWGG 4 cut(s) 157, 622, 795, 964
TaaI ACNGT 2 cut(s) 254, 284
TaqI TCGA 2 cut(s) 147, 192
TasI AATT 9 cut(s) 236, 495, 513, 602, 701, 814, 839, 931, 1040
TatI WGTACW 1 cut(s) 832
TauI GCSGC 1 cut(s) 822
TfiI GAWTC 4 cut(s) 401, 739, 767, 989
Tru1I TTAA 6 cut(s) 39, 96, 239, 372, 458, 1043
Tru9I TTAA 6 cut(s) 39, 96, 239, 372, 458, 1043
TscAI CASTG 4 cut(s) 95, 174, 637, 715
TseFI GTSAC 4 cut(s) 46, 539, 628, 706
Tsp45I GTSAC 4 cut(s) 46, 539, 628, 706
TspDTI ATGAA 3 cut(s) 495, 495, 1070
TspRI CASTG 4 cut(s) 95, 174, 637, 715
VneI GTGCAC 1 cut(s) 165
VpaK11BI GGWCC 1 cut(s) 607
VspI ATTAAT 2 cut(s) 239, 1043
XbaI TCTAGA 1 cut(s) 1018
XcmI CCANNNNNNNNNTGG 1 cut(s) 601
XmiI GTMKAC 1 cut(s) 331
XmnI GAANNNNTTC 3 cut(s) 68, 852, 993
XspI CTAG 4 cut(s) 174, 213, 611, 1019
ZrmI AGTACT 1 cut(s) 834
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.