Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0003703

Physical Location & Seq

Genomic Coordinates Reverse (-)

50554430 .. 50557342

Gene Structure 2913 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG373200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGTCAAAATTTGGGCCAAGAAGCGACCTGGAGGAGGAAGAGCAAGCTAGTCATGCTGAAAAGGAGAGAGAGTTGCTCAGACATTTCCATGAACAATCTTTGAGGGCAAAGCTGAAAAACGAAAAGAAAGGTAGAGGCTTTTCTCAAAATGTTGTGGATATGGCGCTGGCAGATTCGGAGTGTAACAAGCATGAAAATTCCGAATTGAGATTGTCATGTTTCTGTAACAAGGCTTTAGTCAATGTTGGTACTGATTTGGCAAAACTAGTTCCTGGCCGAGTGTCCACTGAGGTAGATGAACGTCTTGCTTATGACACGCATGGAATTATAAGGAAGCTTACGAGACCAAGTGTATTTTCATGTGCTCTATGGGTGCCACTAAATATAGCATCTAACAAAGTTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00030 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

TAL_FSA

Protein Analysis

135

Amino Acids

15.24

Weight (kDa)

7.72

Isoelectric Point (pI)

56.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003703)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0097261 RchiOBHm_Chr4g0388121 RchiOBHm_Chr6g0254981 RchiOBHm_Chr6g0270571
rosa_laevigata	RLG00000013625 RLG00000016400 RLG00000027818 RLG00000028940 RLG00000033711 RLG00000035539 RLG00000035931
rosa_multiflora	Rmu_sc0000322.1_g000027
rosa_roxburghii	Rroxscaffold_1G00026630 Rroxscaffold_5G00347830
rosa_rugosa	Rorug02G0295700 Rorug03G0217900 Rorug04G0030800 Rorug04G0257000 Rorug05G0516900 Rorug06G0100200 Rorug06G0468100
rosa_samantha	Rh1AG155900 Rh1AG219700 Rh1DG187200 Rh2BG424900 Rh4AG076000 Rh4BG015100 Rh4DG099500 Rh7CG342400 Rh7DG317900 Rh7DG373200
rosa_wichuraiana	Rw3G022170 Rw7G027100 Rw7G027110 Rw7G031460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	329
AccB1I	GGYRCC	1 cut(s)	373
AcoI	YGGCCR	1 cut(s)	274
AcsI	RAATTY	2 cut(s)	8, 196
AfaI	GTAC	1 cut(s)	250
AfiI	CCNNNNNNNGG	1 cut(s)	34
AhlI	ACTAGT	1 cut(s)	265
AjnI	CCWGG	2 cut(s)	27, 271
AjuI	GAANNNNNNNTTGG	2 cut(s)	340, 372
AluBI	AGCT	3 cut(s)	47, 112, 337
AluI	AGCT	3 cut(s)	47, 112, 337
Alw21I	GWGCWC	1 cut(s)	367
Alw26I	GTCTC	1 cut(s)	337
AoxI	GGCC	2 cut(s)	14, 274
ApoI	RAATTY	2 cut(s)	8, 196
AspLEI	GCGC	1 cut(s)	166
AspS9I	GGNCC	1 cut(s)	14
BanI	GGYRCC	1 cut(s)	373
Bbv12I	GWGCWC	1 cut(s)	367
BciT130I	CCWGG	2 cut(s)	29, 273
BcoDI	GTCTC	1 cut(s)	337
BcuI	ACTAGT	1 cut(s)	265
BfaI	CTAG	2 cut(s)	48, 266
BfoI	RGCGCY	1 cut(s)	167
Bme1390I	CCNGG	2 cut(s)	29, 273
BmgT120I	GGNCC	1 cut(s)	14
BmiI	GGNNCC	1 cut(s)	375
BmrFI	CCNGG	2 cut(s)	29, 273
BmsI	GCATC	1 cut(s)	398
BplI	GAGNNNNNCTC	2 cut(s)	60, 92
BpmI	CTGGAG	1 cut(s)	50
BsaI	GGTCTC	1 cut(s)	337
BsaXI	ACNNNNNCTCC	2 cut(s)	56, 86
Bsc4I	CCNNNNNNNGG	1 cut(s)	34
BseBI	CCWGG	2 cut(s)	29, 273
BseLI	CCNNNNNNNGG	1 cut(s)	34
BseMII	CTCAG	2 cut(s)	91, 279
BseRI	GAGGAG	1 cut(s)	47
BshFI	GGCC	2 cut(s)	16, 276
BshNI	GGYRCC	1 cut(s)	373
BsiHKAI	GWGCWC	1 cut(s)	367
BslI	CCNNNNNNNGG	1 cut(s)	34
BsmAI	GTCTC	1 cut(s)	337
BsnI	GGCC	2 cut(s)	16, 276
Bso31I	GGTCTC	1 cut(s)	337
Bsp1286I	GDGCHC	1 cut(s)	367
BspANI	GGCC	2 cut(s)	16, 276
BspCNI	CTCAG	2 cut(s)	90, 280
BspLI	GGNNCC	1 cut(s)	375
BspQI	GCTCTTC	1 cut(s)	33
BspT107I	GGYRCC	1 cut(s)	373
BspTNI	GGTCTC	1 cut(s)	337
Bst2UI	CCWGG	2 cut(s)	29, 273
Bst6I	CTCTTC	1 cut(s)	33
BstC8I	GCNNGC	2 cut(s)	45, 168
BstDEI	CTNAG	2 cut(s)	77, 288
BstENI	CCTNNNNNAGG	1 cut(s)	32
BstH2I	RGCGCY	1 cut(s)	167
BstHHI	GCGC	1 cut(s)	166
BstMAI	GTCTC	1 cut(s)	337
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstNI	CCWGG	2 cut(s)	29, 273
BstSCI	CCNGG	2 cut(s)	27, 271
BsuRI	GGCC	2 cut(s)	16, 276
BtsIMutI	CAGTG	1 cut(s)	285
Cac8I	GCNNGC	2 cut(s)	45, 168
CfoI	GCGC	1 cut(s)	166
Cfr13I	GGNCC	1 cut(s)	14
Csp6I	GTAC	1 cut(s)	249
CviAII	CATG	6 cut(s)	53, 89, 191, 216, 320, 360
CviJI	RGCY	7 cut(s)	16, 47, 112, 138, 233, 276, 337
CviKI_1	RGCY	7 cut(s)	16, 47, 112, 138, 233, 276, 337
CviQI	GTAC	1 cut(s)	249
DdeI	CTNAG	2 cut(s)	77, 288
EaeI	YGGCCR	1 cut(s)	274
Eam1104I	CTCTTC	1 cut(s)	33
EarI	CTCTTC	1 cut(s)	33
Eco31I	GGTCTC	1 cut(s)	337
EcoNI	CCTNNNNNAGG	1 cut(s)	32
EcoRII	CCWGG	2 cut(s)	27, 271
FaeI	CATG	6 cut(s)	56, 92, 194, 219, 323, 363
FatI	CATG	6 cut(s)	52, 88, 190, 215, 319, 359
FspBI	CTAG	2 cut(s)	48, 266
GlaI	GCGC	1 cut(s)	165
GsuI	CTGGAG	1 cut(s)	50
HaeII	RGCGCY	1 cut(s)	167
HaeIII	GGCC	2 cut(s)	16, 276
HhaI	GCGC	1 cut(s)	166
Hin1II	CATG	6 cut(s)	56, 92, 194, 219, 323, 363
Hin6I	GCGC	1 cut(s)	164
HinP1I	GCGC	1 cut(s)	164
HindIII	AAGCTT	1 cut(s)	335
HinfI	GANTC	1 cut(s)	173
Hpy166II	GTNNAC	1 cut(s)	285
Hpy188I	TCNGA	3 cut(s)	80, 178, 202
Hpy188III	TCNNGA	1 cut(s)	405
Hpy8I	GTNNAC	1 cut(s)	285
HpyCH4IV	ACGT	1 cut(s)	301
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
HpyF3I	CTNAG	2 cut(s)	77, 288
HpySE526I	ACGT	1 cut(s)	301
Hsp92II	CATG	6 cut(s)	56, 92, 194, 219, 323, 363
HspAI	GCGC	1 cut(s)	164
LguI	GCTCTTC	1 cut(s)	33
LpnPI	CCDG	5 cut(s)	14, 41, 152, 258, 285
LweI	GCATC	1 cut(s)	398
MaeI	CTAG	2 cut(s)	48, 266
MaeII	ACGT	1 cut(s)	301
MaeIII	GTNAC	2 cut(s)	182, 224
MboII	GAAGA	1 cut(s)	50
MhlI	GDGCHC	1 cut(s)	367
MluCI	AATT	4 cut(s)	8, 196, 203, 324
MnlI	CCTC	5 cut(s)	25, 28, 96, 128, 283
MslI	CAYNNNNRTG	1 cut(s)	87
MspR9I	CCNGG	2 cut(s)	29, 273
MvaI	CCWGG	2 cut(s)	29, 273
MwoI	GCNNNNNNNGC	1 cut(s)	53
NlaIII	CATG	6 cut(s)	56, 92, 194, 219, 323, 363
NlaIV	GGNNCC	1 cut(s)	375
NmeAIII	GCCGAG	1 cut(s)	302
PciSI	GCTCTTC	1 cut(s)	33
PfeI	GAWTC	1 cut(s)	173
PsiI	TTATAA	1 cut(s)	329
Psp6I	CCWGG	2 cut(s)	27, 271
PspGI	CCWGG	2 cut(s)	27, 271
PspN4I	GGNNCC	1 cut(s)	375
PspPI	GGNCC	1 cut(s)	14
RsaI	GTAC	1 cut(s)	250
RsaNI	GTAC	1 cut(s)	249
RseI	CAYNNNNRTG	1 cut(s)	87
SapI	GCTCTTC	1 cut(s)	33
Sau96I	GGNCC	1 cut(s)	14
ScrFI	CCNGG	2 cut(s)	29, 273
SduI	GDGCHC	1 cut(s)	367
SetI	ASST	7 cut(s)	30, 49, 114, 133, 294, 304, 339
SfaNI	GCATC	1 cut(s)	398
SmiMI	CAYNNNNRTG	1 cut(s)	87
SpeI	ACTAGT	1 cut(s)	265
Sse9I	AATT	4 cut(s)	8, 196, 203, 324
SspMI	CTAG	2 cut(s)	48, 266
StyD4I	CCNGG	2 cut(s)	27, 271
TaiI	ACGT	1 cut(s)	304
TasI	AATT	4 cut(s)	8, 196, 203, 324
TfiI	GAWTC	1 cut(s)	173
TscAI	CASTG	1 cut(s)	292
TspDTI	ATGAA	4 cut(s)	105, 207, 312, 348
TspRI	CASTG	1 cut(s)	292
XagI	CCTNNNNNAGG	1 cut(s)	32
XapI	RAATTY	2 cut(s)	8, 196
XspI	CTAG	2 cut(s)	48, 266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.